| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas stutzeri RCH2 | 1.0 | Psest_3316 | | Predicted P-loop-containing kinase | 1.0 | Psest_1950 | | D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family | 0.28 | 5 |
| Pseudomonas sp. S08-1 | 0.88 | OH686_08560 | | RNase adapter protein RapZ | 0.70 | OH686_03105 | | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase | low | > 80 |
| Pseudomonas fluorescens FW300-N2C3 | 0.87 | AO356_07050 | | glmZ(sRNA)-inactivating NTPase | 0.72 | AO356_02595 | | D-alanyl-D-alanine carboxypeptidase | low | > 104 |
| Pseudomonas fluorescens FW300-N2E2 | 0.87 | Pf6N2E2_3270 | | Hypothetical ATP-binding protein UPF0042, contains P-loop | 0.73 | Pf6N2E2_2344 | | D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) | 0.21 | 87 |
| Pseudomonas fluorescens SBW25 | 0.87 | PFLU_RS04385 | | RNase adapter RapZ | 0.70 | PFLU_RS22535 | | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.87 | PFLU_RS04385 | | RNase adapter RapZ | 0.70 | PFLU_RS22535 | | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase | low | > 109 |
| Pseudomonas sp. RS175 | 0.86 | PFR28_00170 | | RNase adapter protein RapZ | 0.72 | PFR28_01057 | | D-alanyl-D-alanine carboxypeptidase DacC | low | > 88 |
| Pseudomonas fluorescens GW456-L13 | 0.86 | PfGW456L13_5017 | | Hypothetical ATP-binding protein UPF0042, contains P-loop | 0.68 | PfGW456L13_4091 | | D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) | low | > 87 |
| Pseudomonas fluorescens FW300-N1B4 | 0.86 | Pf1N1B4_1083 | | Hypothetical ATP-binding protein UPF0042, contains P-loop | 0.66 | Pf1N1B4_3846 | | D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) | — | — |
| Pseudomonas simiae WCS417 | 0.86 | PS417_04330 | | glmZ(sRNA)-inactivating NTPase | 0.71 | PS417_20920 | | D-alanyl-D-alanine carboxypeptidase | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.86 | AO353_05195 | | glmZ(sRNA)-inactivating NTPase | 0.70 | AO353_00765 | | D-alanyl-D-alanine carboxypeptidase | low | > 101 |
| Pseudomonas syringae pv. syringae B728a | 0.85 | Psyr_4150 | | Uncharacterized P-loop ATPase protein UPF0042 | 0.72 | Psyr_2111 | | Peptidase S13, D-Ala-D-Ala carboxypeptidase C | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.85 | Psyr_4150 | | Uncharacterized P-loop ATPase protein UPF0042 | 0.72 | Psyr_2111 | | Peptidase S13, D-Ala-D-Ala carboxypeptidase C | low | > 86 |
| Pseudomonas putida KT2440 | 0.84 | PP_0949 | | putative ATP-binding protein UPF0042 | 0.71 | PP_2098 | | D-alanyl-D-alanine carboxypeptidase | low | > 96 |
| Marinobacter adhaerens HP15 | 0.53 | HP15_2445 | | protein yhbJ | 0.41 | HP15_829 | | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase | 0.26 | 67 |
| Enterobacter sp. TBS_079 | 0.47 | MPMX20_04111 | | RNase adapter protein RapZ | 0.11 | MPMX20_04086 | | D-alanyl-D-alanine carboxypeptidase DacB | low | > 85 |
| Escherichia coli ECOR38 | 0.47 | HEPCGN_16800 | rapZ | RNase adapter RapZ | 0.11 | HEPCGN_16915 | dacB | serine-type D-Ala-D-Ala carboxypeptidase | low | > 85 |
| Escherichia coli Nissle 1917 | 0.47 | ECOLIN_RS18440 | | RNase adapter RapZ | 0.11 | ECOLIN_RS18325 | | serine-type D-Ala-D-Ala carboxypeptidase | low | > 52 |
| Escherichia coli ECRC98 | 0.47 | JDDGAC_21550 | rapZ | RNase adapter RapZ | 0.11 | JDDGAC_21665 | dacB | serine-type D-Ala-D-Ala carboxypeptidase | — | — |
| Escherichia coli ECOR27 | 0.47 | NOLOHH_09725 | rapZ | RNase adapter RapZ | 0.11 | NOLOHH_09840 | dacB | serine-type D-Ala-D-Ala carboxypeptidase | low | > 57 |
| Escherichia coli ECRC99 | 0.47 | KEDOAH_10225 | rapZ | RNase adapter RapZ | 0.11 | KEDOAH_10110 | dacB | serine-type D-Ala-D-Ala carboxypeptidase | — | — |
| Escherichia coli ECRC62 | 0.47 | BNILDI_01810 | rapZ | RNase adapter RapZ | 0.11 | BNILDI_01695 | dacB | serine-type D-Ala-D-Ala carboxypeptidase | — | — |
| Escherichia fergusonii Becca | 0.47 | EFB2_00618 | | RNase adapter protein RapZ | 0.11 | EFB2_00641 | | D-alanyl-D-alanine carboxypeptidase DacB | low | > 86 |
| Serratia liquefaciens MT49 | 0.47 | IAI46_22485 | | RNase adapter RapZ | 0.11 | IAI46_01875 | | serine-type D-Ala-D-Ala carboxypeptidase | low | > 86 |
| Escherichia coli BL21 | 0.47 | ECD_03070 | | adaptor protein for GlmZ/GlmY sRNA decay, glucosamine-6-phosphate-regulated; NTPase | 0.11 | ECD_03047 | | D-alanyl-D-alanine carboxypeptidase | low | > 60 |
| Escherichia coli BW25113 | 0.47 | b3205 | yhbJ | hypothetical protein (NCBI) | 0.11 | b3182 | dacB | D-alanyl-D-alanine carboxypeptidase (NCBI) | low | > 76 |
| Enterobacter asburiae PDN3 | 0.47 | EX28DRAFT_3259 | | Predicted P-loop-containing kinase | 0.11 | EX28DRAFT_3234 | | D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family | low | > 76 |
| Escherichia coli ECRC101 | 0.47 | OKFHMN_17925 | rapZ | RNase adapter RapZ | 0.11 | OKFHMN_18040 | dacB | serine-type D-Ala-D-Ala carboxypeptidase | — | — |
| Pectobacterium carotovorum WPP14 | 0.47 | HER17_RS20075 | | RNase adapter RapZ | 0.13 | HER17_RS18335 | | serine-type D-Ala-D-Ala carboxypeptidase | low | > 75 |
| Escherichia coli ECRC102 | 0.47 | NIAGMN_15685 | rapZ | RNase adapter RapZ | 0.11 | NIAGMN_15800 | dacB | serine-type D-Ala-D-Ala carboxypeptidase | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.47 | OHPLBJKB_00495 | | RNase adapter protein RapZ | 0.11 | OHPLBJKB_00518 | | D-alanyl-D-alanine carboxypeptidase DacB | low | > 73 |
| Escherichia coli ECRC101 | 0.47 | MCAODC_08445 | rapZ | RNase adapter RapZ | 0.11 | MCAODC_08560 | dacB | serine-type D-Ala-D-Ala carboxypeptidase | — | — |
| Pantoea sp. MT58 | 0.46 | IAI47_17200 | | RNase adapter RapZ | 0.12 | IAI47_17085 | | serine-type D-Ala-D-Ala carboxypeptidase | low | > 76 |
| Ralstonia solanacearum GMI1000 | 0.45 | RS_RS01995 | | RNase adaptor protein RapZ | 0.33 | RS_RS02925 | | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase | low | > 80 |
| Ralstonia solanacearum PSI07 | 0.45 | RPSI07_RS22155 | | RNase adapter RapZ | 0.33 | RPSI07_RS21110 | | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase | low | > 81 |
| Dechlorosoma suillum PS | 0.45 | Dsui_0990 | | putative P-loop-containing kinase | 0.30 | Dsui_0294 | | D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family | low | > 51 |
| Ralstonia sp. UNC404CL21Col | 0.45 | ABZR87_RS07035 | | RNase adapter RapZ | 0.33 | ABZR87_RS08110 | | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase | low | > 80 |
| Ralstonia solanacearum IBSBF1503 | 0.45 | RALBFv3_RS11145 | | RNase adapter RapZ | 0.33 | RALBFv3_RS12220 | | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase | low | > 76 |
| Ralstonia solanacearum UW163 | 0.45 | UW163_RS02435 | | RNase adapter RapZ | 0.33 | UW163_RS01390 | | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase | — | — |
| Paraburkholderia sabiae LMG 24235 | 0.44 | QEN71_RS01735 | | RNase adapter RapZ | 0.32 | QEN71_RS02470 | | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase | low | > 153 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.44 | H281DRAFT_01931 | | UPF0042 nucleotide-binding protein | 0.31 | H281DRAFT_04181 | | D-alanyl-D-alanine carboxypeptidase / D-alanyl-D-alanine-endopeptidase (penicillin-binding protein 4) | low | > 103 |
| Dyella japonica UNC79MFTsu3.2 | 0.44 | ABZR86_RS19800 | | RNase adapter RapZ | 0.11 | ABZR86_RS00485 | | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase | low | > 74 |
| Cupriavidus basilensis FW507-4G11 | 0.42 | RR42_RS02060 | | nucleotide-binding protein | 0.31 | RR42_RS03245 | | D-alanyl-D-alanine carboxypeptidase | low | > 128 |
| Herbaspirillum seropedicae SmR1 | 0.41 | HSERO_RS19535 | | nucleotide-binding protein | 0.34 | HSERO_RS16870 | | D-alanyl-D-alanine carboxypeptidase | low | > 78 |
| Acidovorax sp. GW101-3H11 | 0.40 | Ac3H11_3459 | | Hypothetical ATP-binding protein UPF0042, contains P-loop | 0.30 | Ac3H11_670 | | D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) | low | > 79 |
| Variovorax sp. OAS795 | 0.40 | ABID97_RS23710 | | RNase adapter RapZ | 0.31 | ABID97_RS01685 | | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase | low | > 91 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.39 | GFF828 | | Hypothetical ATP-binding protein UPF0042, contains P-loop | 0.25 | GFF2768 | | D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) | low | > 90 |
| Castellaniella sp019104865 MT123 | 0.39 | ABCV34_RS14330 | | RNase adapter RapZ | 0.26 | ABCV34_RS15375 | | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase | low | > 48 |
| Variovorax sp. SCN45 | 0.38 | GFF2356 | | RNase adapter protein RapZ | 0.31 | GFF5516 | | D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) | low | > 127 |
| Phaeobacter inhibens DSM 17395 | 0.33 | PGA1_c01180 | | Predicted P-loop-containing kinase | 0.10 | PGA1_c26270 | | putative D-alanyl-D-alanine carboxypeptidase | low | > 62 |
Not shown: 33 genomes with orthologs for Psest_3316 only; 7 genomes with orthologs for Psest_1950 only