Conservation of cofitness between HP15_1379 and HP15_1829 in Marinobacter adhaerens HP15

52 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Marinobacter adhaerens HP15 1.0 HP15_1379 RNA methylase 1.0 HP15_1829 tRNA pseudouridine synthase A 0.31 20
Pseudomonas putida KT2440 0.49 PP_2096 fused 23S rRNA m2G2445 methyltransferase and 23S rRNA m7G2069 methyltransferase 0.47 PP_1994 tRNA pseudouridine (38-40)synthase low > 96
Pseudomonas stutzeri RCH2 0.49 Psest_1949 Predicted N6-adenine-specific DNA methylase 0.44 Psest_2585 pseudouridylate synthase I low > 67
Pseudomonas sp. S08-1 0.48 OH686_03110 23S rRNA (guanine(2445)-N(2))-methyltransferase / 23S rRNA (guanine(2069)-N(7))-methyltransferase 0.47 OH686_04450 tRNA pseudouridine(38-40) synthase low > 80
Pseudomonas syringae pv. syringae B728a 0.47 Psyr_2108 23S rRNA m(2)G-2445 methyltransferase 0.46 Psyr_1662 tRNA pseudouridine synthase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.47 Psyr_2108 23S rRNA m(2)G-2445 methyltransferase 0.46 Psyr_1662 tRNA pseudouridine synthase low > 86
Pseudomonas simiae WCS417 0.47 PS417_20930 50S rRNA methyltransferase 0.46 PS417_18565 pseudouridine synthase — —
Pseudomonas fluorescens SBW25-INTG 0.47 PFLU_RS22545 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.46 PFLU_RS20545 tRNA pseudouridine(38-40) synthase TruA low > 109
Pseudomonas fluorescens SBW25 0.47 PFLU_RS22545 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.46 PFLU_RS20545 tRNA pseudouridine(38-40) synthase TruA low > 109
Pseudomonas fluorescens GW456-L13 0.47 PfGW456L13_4094 23S rRNA (guanine-N-2-) -methyltransferase rlmL EC 2.1.1.-) 0.45 PfGW456L13_3941 tRNA pseudouridine synthase A (EC 4.2.1.70) low > 87
Pseudomonas sp. RS175 0.47 PFR28_01055 Ribosomal RNA large subunit methyltransferase K/L 0.45 PFR28_02817 tRNA pseudouridine synthase A low > 88
Pseudomonas fluorescens FW300-N1B4 0.47 Pf1N1B4_3844 23S rRNA (guanine-N-2-) -methyltransferase rlmL EC 2.1.1.-) 0.46 Pf1N1B4_7 tRNA pseudouridine synthase A (EC 4.2.1.70) low > 87
Pseudomonas fluorescens FW300-N2E3 0.46 AO353_00775 50S rRNA methyltransferase 0.45 AO353_20660 pseudouridine synthase low > 101
Pseudomonas fluorescens FW300-N2E2 0.46 Pf6N2E2_2346 23S rRNA (guanine-N-2-) -methyltransferase rlmL EC 2.1.1.-) 0.46 Pf6N2E2_70 tRNA pseudouridine synthase A (EC 4.2.1.70) low > 103
Pseudomonas fluorescens FW300-N2C3 0.46 AO356_02605 50S rRNA methyltransferase 0.46 AO356_21435 pseudouridine synthase low > 104
Dyella japonica UNC79MFTsu3.2 0.42 ABZR86_RS21235 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.34 ABZR86_RS08015 tRNA pseudouridine(38-40) synthase TruA low > 74
Shewanella amazonensis SB2B 0.40 Sama_1600 rlmL 23S rRNA m(2)G2445 methyltransferase (RefSeq) 0.49 Sama_2150 truA tRNA pseudouridine synthase A (RefSeq) low > 62
Kangiella aquimarina DSM 16071 0.40 B158DRAFT_2229 23S rRNA m(2)G-2445 methyltransferase (EC 2.1.1.52) 0.46 B158DRAFT_1483 pseudouridylate synthase I low > 40
Shewanella loihica PV-4 0.40 Shew_1812 23S rRNA m(2)G2445 methyltransferase (RefSeq) 0.47 Shew_2306 tRNA pseudouridine synthase A (RefSeq) — —
Xanthomonas campestris pv. campestris strain 8004 0.40 Xcc-8004.3335.1 23S rRNA (guanine-N-2-) -methyltransferase rlmL EC 2.1.1.-) 0.38 Xcc-8004.1961.1 tRNA pseudouridine synthase A (EC 4.2.1.70) low > 74
Rhodanobacter denitrificans FW104-10B01 0.40 LRK54_RS14600 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.37 LRK54_RS01700 tRNA pseudouridine(38-40) synthase TruA low > 59
Rhodanobacter denitrificans MT42 0.40 LRK55_RS14315 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.37 LRK55_RS01480 tRNA pseudouridine(38-40) synthase TruA low > 63
Dickeya dadantii 3937 0.39 DDA3937_RS12840 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.47 DDA3937_RS14465 tRNA pseudouridine(38-40) synthase TruA low > 74
Escherichia coli ECOR27 0.39 NOLOHH_21835 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.46 NOLOHH_14305 truA tRNA pseudouridine(38-40) synthase TruA low > 75
Escherichia coli ECRC62 0.39 BNILDI_20000 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.46 BNILDI_13225 truA tRNA pseudouridine(38-40) synthase TruA low > 75
Escherichia fergusonii Becca 0.39 EFB2_03123 Ribosomal RNA large subunit methyltransferase K/L 0.46 EFB2_01540 tRNA pseudouridine synthase A low > 86
Shewanella sp. ANA-3 0.39 Shewana3_1601 rlmL 23S rRNA m(2)G2445 methyltransferase (RefSeq) 0.48 Shewana3_1479 truA tRNA pseudouridine synthase A (RefSeq) 0.58 10
Escherichia coli ECRC101 0.39 MCAODC_24670 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.46 MCAODC_13710 truA aspartate-semialdehyde dehydrogenase low > 87
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.39 GFF3239 23S rRNA (guanine-N-2-) -methyltransferase rlmL EC 2.1.1.-) 0.47 GFF1934 tRNA pseudouridine synthase A (EC 4.2.1.70) low > 78
Escherichia coli ECRC99 0.39 KEDOAH_22455 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.46 KEDOAH_05525 truA aspartate-semialdehyde dehydrogenase — —
Escherichia coli Nissle 1917 0.39 ECOLIN_RS04980 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.46 ECOLIN_RS13435 tRNA pseudouridine(38-40) synthase TruA 0.40 8
Escherichia coli ECOR38 0.39 HEPCGN_23240 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.46 HEPCGN_21875 truA aspartate-semialdehyde dehydrogenase low > 87
Escherichia coli ECRC100 0.39 OKFHMN_05280 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.46 OKFHMN_22670 truA aspartate-semialdehyde dehydrogenase low > 80
Escherichia coli ECRC102 0.39 NIAGMN_03000 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.46 NIAGMN_20445 truA aspartate-semialdehyde dehydrogenase — —
Escherichia coli ECRC98 0.39 JDDGAC_08890 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.46 JDDGAC_26630 truA aspartate-semialdehyde dehydrogenase — —
Lysobacter sp. OAE881 0.39 ABIE51_RS14475 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.42 ABIE51_RS08245 tRNA pseudouridine(38-40) synthase TruA low > 62
Vibrio cholerae E7946 ATCC 55056 0.39 CSW01_07480 ribosomal RNA large subunit methyltransferase K/L 0.47 CSW01_05090 tRNA pseudouridine(38-40) synthase TruA low > 62
Escherichia coli HS(pFamp)R (ATCC 700891) 0.39 OHPLBJKB_02718 Ribosomal RNA large subunit methyltransferase K/L 0.46 OHPLBJKB_01387 tRNA pseudouridine synthase A low > 73
Escherichia coli BW25113 0.39 b0948 ycbY predicted methyltransferase (NCBI) 0.47 b2318 truA tRNA pseudouridine synthase A (NCBI) low > 76
Escherichia coli BL21 0.39 ECD_00952 23S rRNA m(2)G2445 and m(7)G2069 methyltransferases, SAM-dependent 0.46 ECD_02243 tRNA pseudouridine(38-40) synthase — —
Pectobacterium carotovorum WPP14 0.39 HER17_RS11990 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.46 HER17_RS06990 tRNA pseudouridine(38-40) synthase TruA low > 75
Dickeya dianthicola ME23 0.39 DZA65_RS13375 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.47 DZA65_RS15370 tRNA pseudouridine(38-40) synthase TruA low > 75
Dickeya dianthicola 67-19 0.39 HGI48_RS12910 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.47 HGI48_RS14435 tRNA pseudouridine(38-40) synthase TruA low > 71
Klebsiella michiganensis M5al 0.39 BWI76_RS09925 23S rRNA (guanine(2445)-N(2))/(guanine(2069)-N(7))- methyltransferase 0.46 BWI76_RS20380 tRNA pseudouridine(38-40) synthase TruA low > 92
Enterobacter sp. TBS_079 0.38 MPMX20_01599 Ribosomal RNA large subunit methyltransferase K/L 0.47 MPMX20_03253 tRNA pseudouridine synthase A low > 85
Rahnella sp. WP5 0.38 EX31_RS18080 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.47 EX31_RS19600 tRNA pseudouridine(38-40) synthase TruA low > 89
Serratia liquefaciens MT49 0.38 IAI46_08820 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.47 IAI46_17840 tRNA pseudouridine(38-40) synthase TruA low > 86
Rhodanobacter sp. FW510-T8 0.38 OKGIIK_03440 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.34 OKGIIK_04830 truA tRNA pseudouridine(38-40) synthase TruA — —
Enterobacter asburiae PDN3 0.38 EX28DRAFT_1995 Predicted N6-adenine-specific DNA methylase 0.47 EX28DRAFT_0286 tRNA pseudouridine(38-40) synthase low > 76
Erwinia tracheiphila SCR3 0.38 LU632_RS09965 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.44 LU632_RS07825 truA tRNA pseudouridine(38-40) synthase TruA — —
Alteromonas macleodii MIT1002 0.37 MIT1002_02036 Ribosomal RNA large subunit methyltransferase K/L 0.46 MIT1002_02529 tRNA pseudouridine synthase A low > 70
Pantoea sp. MT58 0.37 IAI47_12690 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.42 IAI47_06245 tRNA pseudouridine(38-40) synthase TruA low > 76
Acinetobacter radioresistens SK82 0.36 MPMX26_01097 Ribosomal RNA large subunit methyltransferase K/L 0.40 MPMX26_00352 tRNA pseudouridine synthase A low > 36

Not shown: 1 genomes with orthologs for HP15_1379 only; 47 genomes with orthologs for HP15_1829 only