| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Phaeobacter inhibens DSM 17395 | 1.0 | PGA1_c05650 | | tRNA pseudouridine synthase A | 1.0 | PGA1_c11760 | | putative proline dehydrogenase transcriptional activator | 0.37 | 3 |
| Rhizobium sp. OAE497 | 0.52 | ABIE40_RS01915 | | tRNA pseudouridine(38-40) synthase TruA | 0.61 | ABIE40_RS23450 | | Lrp/AsnC family transcriptional regulator | low | > 107 |
| Azospirillum brasilense Sp245 | 0.48 | AZOBR_RS03570 | | tRNA pseudouridine synthase A | 0.39 | AZOBR_RS23685 | | AsnC family transcriptional regulator | — | — |
| Agrobacterium fabrum C58 | 0.47 | Atu0368 | | tRNA pseudouridine synthase I | 0.59 | Atu4159 | | AsnC family transcriptional regulator | low | > 89 |
| Bosea sp. OAE506 | 0.41 | ABIE41_RS00165 | | tRNA pseudouridine(38-40) synthase TruA | 0.44 | ABIE41_RS07920 | | Lrp/AsnC ligand binding domain-containing protein | low | > 77 |
| Pseudomonas putida KT2440 | 0.31 | PP_1994 | | tRNA pseudouridine (38-40)synthase | 0.39 | PP_5271 | | DNA-binding transcriptional dual regulator, leucine-binding | low | > 96 |
| Alteromonas macleodii MIT1002 | 0.30 | MIT1002_02529 | | tRNA pseudouridine synthase A | 0.41 | MIT1002_02181 | | Leucine-responsive regulatory protein | low | > 70 |
| Variovorax sp. OAS795 | 0.30 | ABID97_RS08440 | | tRNA pseudouridine(38-40) synthase TruA | 0.39 | ABID97_RS22380 | | winged helix-turn-helix transcriptional regulator | low | > 91 |
| Pseudomonas sp. S08-1 | 0.30 | OH686_04450 | | tRNA pseudouridine(38-40) synthase | 0.40 | OH686_13680 | | Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system | low | > 80 |
| Vibrio cholerae E7946 ATCC 55056 | 0.30 | CSW01_05090 | | tRNA pseudouridine(38-40) synthase TruA | 0.42 | CSW01_09530 | | leucine-responsive transcriptional regulator Lrp | — | — |
| Shewanella amazonensis SB2B | 0.30 | Sama_2150 | truA | tRNA pseudouridine synthase A (RefSeq) | 0.43 | Sama_1771 | | leucine-responsive transcriptional regulator (RefSeq) | low | > 62 |
| Serratia liquefaciens MT49 | 0.29 | IAI46_17840 | | tRNA pseudouridine(38-40) synthase TruA | 0.43 | IAI46_08555 | | leucine-responsive transcriptional regulator Lrp | low | > 86 |
| Escherichia coli ECRC98 | 0.29 | JDDGAC_26630 | truA | aspartate-semialdehyde dehydrogenase | 0.43 | JDDGAC_09385 | lrp | leucine-responsive transcriptional regulator Lrp | — | — |
| Variovorax sp. SCN45 | 0.29 | GFF3885 | | tRNA pseudouridine(38-40) synthase (EC 5.4.99.12) | 0.38 | GFF1774 | | Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system | 0.66 | 26 |
| Escherichia coli ECRC101 | 0.29 | MCAODC_13710 | truA | aspartate-semialdehyde dehydrogenase | 0.43 | MCAODC_24965 | lrp | leucine-responsive transcriptional regulator Lrp | — | — |
| Escherichia coli ECOR38 | 0.29 | HEPCGN_21875 | truA | aspartate-semialdehyde dehydrogenase | 0.43 | HEPCGN_22935 | lrp | leucine-responsive transcriptional regulator Lrp | low | > 85 |
| Escherichia coli ECRC62 | 0.29 | BNILDI_13225 | truA | tRNA pseudouridine(38-40) synthase TruA | 0.43 | BNILDI_20400 | lrp | leucine-responsive transcriptional regulator Lrp | — | — |
| Escherichia coli Nissle 1917 | 0.29 | ECOLIN_RS13435 | | tRNA pseudouridine(38-40) synthase TruA | 0.43 | ECOLIN_RS04730 | | leucine-responsive transcriptional regulator Lrp | low | > 52 |
| Escherichia coli ECRC102 | 0.29 | NIAGMN_20445 | truA | aspartate-semialdehyde dehydrogenase | 0.43 | NIAGMN_03295 | lrp | leucine-responsive transcriptional regulator Lrp | — | — |
| Enterobacter sp. TBS_079 | 0.29 | MPMX20_03253 | | tRNA pseudouridine synthase A | 0.43 | MPMX20_01551 | | Leucine-responsive regulatory protein | low | > 85 |
| Escherichia coli ECRC101 | 0.29 | OKFHMN_22670 | truA | aspartate-semialdehyde dehydrogenase | 0.43 | OKFHMN_05575 | lrp | leucine-responsive transcriptional regulator Lrp | — | — |
| Escherichia coli ECRC99 | 0.29 | KEDOAH_05525 | truA | aspartate-semialdehyde dehydrogenase | 0.43 | KEDOAH_22160 | lrp | leucine-responsive transcriptional regulator Lrp | — | — |
| Enterobacter asburiae PDN3 | 0.29 | EX28DRAFT_0286 | | tRNA pseudouridine(38-40) synthase | 0.43 | EX28DRAFT_2043 | | transcriptional regulator, AsnC family | low | > 76 |
| Escherichia coli BW25113 | 0.29 | b2318 | truA | tRNA pseudouridine synthase A (NCBI) | 0.43 | b0889 | lrp | DNA-binding transcriptional dual regulator, leucine-binding (NCBI) | low | > 76 |
| Shewanella loihica PV-4 | 0.29 | Shew_2306 | | tRNA pseudouridine synthase A (RefSeq) | 0.43 | Shew_2025 | | leucine-responsive transcriptional regulator (RefSeq) | — | — |
| Erwinia tracheiphila SCR3 | 0.29 | LU632_RS07825 | truA | tRNA pseudouridine(38-40) synthase TruA | 0.41 | LU632_RS09740 | lrp | leucine-responsive transcriptional regulator Lrp | — | — |
| Rahnella sp. WP5 | 0.29 | EX31_RS19600 | | tRNA pseudouridine(38-40) synthase TruA | 0.43 | EX31_RS18530 | | leucine-responsive transcriptional regulator Lrp | 0.79 | 3 |
| Escherichia coli ECOR27 | 0.29 | NOLOHH_14305 | truA | tRNA pseudouridine(38-40) synthase TruA | 0.43 | NOLOHH_22145 | lrp | leucine-responsive transcriptional regulator Lrp | low | > 57 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.29 | OHPLBJKB_01387 | | tRNA pseudouridine synthase A | 0.43 | OHPLBJKB_02779 | | Leucine-responsive regulatory protein | low | > 73 |
| Pectobacterium carotovorum WPP14 | 0.29 | HER17_RS06990 | | tRNA pseudouridine(38-40) synthase TruA | 0.43 | HER17_RS12360 | | leucine-responsive transcriptional regulator Lrp | low | > 75 |
| Escherichia coli BL21 | 0.29 | ECD_02243 | | tRNA pseudouridine(38-40) synthase | 0.43 | ECD_00893 | | leucine-responsive global transcriptional regulator | — | — |
| Pantoea sp. MT58 | 0.28 | IAI47_06245 | | tRNA pseudouridine(38-40) synthase TruA | 0.41 | IAI47_12915 | | leucine-responsive transcriptional regulator Lrp | low | > 76 |
| Escherichia fergusonii Becca | 0.28 | EFB2_01540 | | tRNA pseudouridine synthase A | 0.43 | EFB2_03172 | | Leucine-responsive regulatory protein | low | > 86 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.28 | GFF1934 | | tRNA pseudouridine synthase A (EC 4.2.1.70) | 0.43 | GFF4893 | | Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system | low | > 78 |
| Pseudomonas fluorescens FW300-N2E3 | 0.28 | AO353_20660 | | pseudouridine synthase | 0.38 | AO353_09160 | | AsnC family transcriptional regulator | low | > 101 |
| Herbaspirillum seropedicae SmR1 | 0.28 | HSERO_RS16485 | | tRNA pseudouridine synthase A | 0.41 | HSERO_RS08380 | | AsnC family transcriptional regulator | low | > 78 |
| Pseudomonas sp. RS175 | 0.28 | PFR28_02817 | | tRNA pseudouridine synthase A | 0.38 | PFR28_04400 | | Leucine-responsive regulatory protein | low | > 88 |
| Klebsiella michiganensis M5al | 0.28 | BWI76_RS20380 | | tRNA pseudouridine(38-40) synthase TruA | 0.43 | BWI76_RS09655 | | leucine-responsive regulatory protein | low | > 92 |
| Pseudomonas fluorescens GW456-L13 | 0.28 | PfGW456L13_3941 | | tRNA pseudouridine synthase A (EC 4.2.1.70) | 0.38 | PfGW456L13_811 | | Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system | low | > 87 |
| Pseudomonas fluorescens FW300-N1B4 | 0.28 | Pf1N1B4_7 | | tRNA pseudouridine synthase A (EC 4.2.1.70) | 0.38 | Pf1N1B4_2143 | | Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system | low | > 87 |
| Pseudomonas fluorescens FW300-N2E2 | 0.28 | Pf6N2E2_70 | | tRNA pseudouridine synthase A (EC 4.2.1.70) | 0.38 | Pf6N2E2_4390 | | Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system | low | > 103 |
| Pseudomonas simiae WCS417 | 0.28 | PS417_18565 | | pseudouridine synthase | 0.38 | PS417_27710 | | AsnC family transcriptional regulator | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.28 | Psyr_1662 | | tRNA pseudouridine synthase | 0.38 | Psyr_0234 | | transcriptional regulator, AsnC family | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.28 | Psyr_1662 | | tRNA pseudouridine synthase | 0.38 | Psyr_0234 | | transcriptional regulator, AsnC family | low | > 86 |
| Pseudomonas fluorescens FW300-N2C3 | 0.28 | AO356_21435 | | pseudouridine synthase | 0.38 | AO356_12615 | | AsnC family transcriptional regulator | low | > 104 |
| Marinobacter adhaerens HP15 | 0.28 | HP15_1829 | | tRNA pseudouridine synthase A | 0.56 | HP15_2690 | | transcriptional regulator, AsnC family | low | > 73 |
| Dickeya dadantii 3937 | 0.27 | DDA3937_RS14465 | | tRNA pseudouridine(38-40) synthase TruA | 0.43 | DDA3937_RS09590 | | leucine-responsive transcriptional regulator Lrp | low | > 74 |
| Shewanella sp. ANA-3 | 0.27 | Shewana3_1479 | truA | tRNA pseudouridine synthase A (RefSeq) | 0.43 | Shewana3_2049 | | leucine-responsive transcriptional regulator (RefSeq) | low | > 73 |
| Dickeya dianthicola ME23 | 0.27 | DZA65_RS15370 | | tRNA pseudouridine(38-40) synthase TruA | 0.43 | DZA65_RS09915 | | leucine-responsive transcriptional regulator Lrp | low | > 75 |
| Dickeya dianthicola 67-19 | 0.27 | HGI48_RS14435 | | tRNA pseudouridine(38-40) synthase TruA | 0.43 | HGI48_RS09605 | | leucine-responsive transcriptional regulator Lrp | low | > 71 |
| Pseudomonas fluorescens SBW25-INTG | 0.27 | PFLU_RS20545 | | tRNA pseudouridine(38-40) synthase TruA | 0.38 | PFLU_RS29385 | | AsnC family transcriptional regulator | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.27 | PFLU_RS20545 | | tRNA pseudouridine(38-40) synthase TruA | 0.38 | PFLU_RS29385 | | AsnC family transcriptional regulator | low | > 109 |
| Pseudomonas stutzeri RCH2 | 0.26 | Psest_2585 | | pseudouridylate synthase I | 0.37 | Psest_3794 | | Transcriptional regulators | low | > 67 |
| Rhodanobacter sp. FW510-T8 | 0.25 | OKGIIK_04830 | truA | tRNA pseudouridine(38-40) synthase TruA | 0.38 | OKGIIK_06660 | lrp | AsnC family transcriptional regulator | — | — |
| Rhodanobacter denitrificans MT42 | 0.24 | LRK55_RS01480 | | tRNA pseudouridine(38-40) synthase TruA | 0.38 | LRK55_RS00365 | | winged helix-turn-helix transcriptional regulator | low | > 63 |
| Rhodanobacter denitrificans FW104-10B01 | 0.24 | LRK54_RS01700 | | tRNA pseudouridine(38-40) synthase TruA | 0.38 | LRK54_RS00595 | | winged helix-turn-helix transcriptional regulator | low | > 59 |
Not shown: 45 genomes with orthologs for PGA1_c05650 only; 1 genomes with orthologs for PGA1_c11760 only