Conservation of cofitness between PS417_11305 and PS417_05880 in Pseudomonas simiae WCS417

53 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas simiae WCS417 1.0 PS417_11305 general secretion pathway protein GspF 1.0 PS417_05880 ribosomal protein S12 methylthiotransferase 0.22 1
Pseudomonas fluorescens SBW25-INTG 0.97 PFLU_RS11900 type II secretion system protein GspF 0.99 PFLU_RS05950 30S ribosomal protein S12 methylthiotransferase RimO low > 109
Pseudomonas fluorescens SBW25 0.97 PFLU_RS11900 type II secretion system protein GspF 0.99 PFLU_RS05950 30S ribosomal protein S12 methylthiotransferase RimO low > 109
Pseudomonas fluorescens FW300-N2E2 0.89 Pf6N2E2_653 General secretion pathway protein F 0.94 Pf6N2E2_2978 Ribosomal protein S12p Asp88 (E. coli) methylthiotransferase low > 103
Pseudomonas fluorescens FW300-N2C3 0.89 AO356_24800 type II secretion system protein GspF 0.95 AO356_05600 ribosomal protein S12 methylthiotransferase RimO low > 104
Pseudomonas sp. RS175 0.88 PFR28_01752 Type II secretion system protein F 0.96 PFR28_00486 Ribosomal protein S12 methylthiotransferase RimO low > 88
Variovorax sp. SCN45 0.59 GFF102 General secretion pathway protein F 0.60 GFF400 Ribosomal protein S12p Asp88 (E. coli) methylthiotransferase (EC 2.8.4.4) low > 127
Ralstonia sp. UNC404CL21Col 0.50 ABZR87_RS03460 type II secretion system inner membrane protein GspF 0.64 ABZR87_RS13275 30S ribosomal protein S12 methylthiotransferase RimO low > 80
Ralstonia solanacearum GMI1000 0.50 RS_RS15650 type II secretion system protein GspF 0.65 RS_RS08245 30S ribosomal protein S12 methylthiotransferase RimO low > 80
Ralstonia solanacearum PSI07 0.50 RPSI07_RS09505 type II secretion system protein GspF 0.65 RPSI07_RS16010 30S ribosomal protein S12 methylthiotransferase RimO low > 81
Ralstonia solanacearum UW163 0.50 UW163_RS05870 type II secretion system protein GspF 0.65 UW163_RS14790 30S ribosomal protein S12 methylthiotransferase RimO — —
Ralstonia solanacearum IBSBF1503 0.50 RALBFv3_RS07755 type II secretion system protein GspF 0.65 RALBFv3_RS01480 30S ribosomal protein S12 methylthiotransferase RimO low > 76
Cupriavidus basilensis FW507-4G11 0.49 RR42_RS19530 general secretion pathway protein GspF 0.63 RR42_RS07640 ribosomal protein S12 methylthiotransferase low > 128
Burkholderia phytofirmans PsJN 0.49 BPHYT_RS19605 general secretion pathway protein F 0.63 BPHYT_RS09170 ribosomal protein S12 methylthiotransferase RimO — —
Paraburkholderia bryophila 376MFSha3.1 0.48 H281DRAFT_02354 general secretion pathway protein F 0.63 H281DRAFT_00855 SSU ribosomal protein S12P methylthiotransferase low > 103
Paraburkholderia graminis OAS925 0.48 ABIE53_000298 general secretion pathway protein F 0.63 ABIE53_002068 ribosomal protein S12 methylthiotransferase low > 113
Paraburkholderia sabiae LMG 24235 0.47 QEN71_RS29520 type II secretion system inner membrane protein GspF 0.63 QEN71_RS22185 30S ribosomal protein S12 methylthiotransferase RimO low > 153
Marinobacter adhaerens HP15 0.42 HP15_1603 general secretion pathway protein F 0.75 HP15_2459 MiaB-like tRNA modifying enzyme YliG low > 73
Pectobacterium carotovorum WPP14 0.40 HER17_RS06695 type II secretion system inner membrane protein GspF 0.70 HER17_RS12755 30S ribosomal protein S12 methylthiotransferase RimO low > 75
Hydrogenophaga sp. GW460-11-11-14-LB1 0.40 GFF1392 General secretion pathway protein F / Type II secretory pathway, component PulF 0.61 GFF4923 Ribosomal protein S12p Asp88 (E. coli) methylthiotransferase 0.37 75
Acidovorax sp. GW101-3H11 0.39 Ac3H11_4054 General secretion pathway protein F / Type II secretory pathway, component PulF 0.59 Ac3H11_364 Ribosomal protein S12p Asp88 (E. coli) methylthiotransferase low > 79
Variovorax sp. OAS795 0.39 ABID97_RS06940 type II secretion system inner membrane protein GspF 0.60 ABID97_RS17220 30S ribosomal protein S12 methylthiotransferase RimO low > 91
Pseudomonas stutzeri RCH2 0.38 Psest_4201 general secretion pathway protein F 0.83 Psest_2632 ribosomal protein S12 methylthiotransferase RimO low > 67
Pseudomonas sp. S08-1 0.38 OH686_11780 type II secretion system protein F 0.85 OH686_18875 ribosomal protein S12 methylthiotransferase RimO — —
Dickeya dadantii 3937 0.37 DDA3937_RS14790 type II secretion system inner membrane protein GspF 0.69 DDA3937_RS09385 30S ribosomal protein S12 methylthiotransferase RimO low > 74
Shewanella oneidensis MR-1 0.37 SO0168 gspF general secretion pathway protein F (NCBI ptt file) 0.63 SO4072 yliG MiaB-like putative RNA modifying enzyme YliG (NCBI ptt file) low > 76
Dickeya dianthicola ME23 0.37 DZA65_RS15670 type II secretion system inner membrane protein GspF 0.70 DZA65_RS09710 30S ribosomal protein S12 methylthiotransferase RimO low > 75
Dickeya dianthicola 67-19 0.37 HGI48_RS14725 type II secretion system inner membrane protein GspF 0.70 HGI48_RS09400 30S ribosomal protein S12 methylthiotransferase RimO low > 71
Vibrio cholerae E7946 ATCC 55056 0.37 CSW01_13780 type II secretion system protein GspF 0.70 CSW01_13260 30S ribosomal protein S12 methylthiotransferase RimO — —
Shewanella sp. ANA-3 0.36 Shewana3_0153 general secretion pathway protein F (RefSeq) 0.64 Shewana3_3627 MiaB-like tRNA modifying enzyme YliG (RefSeq) low > 73
Kangiella aquimarina DSM 16071 0.36 B158DRAFT_0691 general secretion pathway protein F 0.69 B158DRAFT_2522 SSU ribosomal protein S12P methylthiotransferase (EC 2.-.-.-) low > 40
Shewanella amazonensis SB2B 0.36 Sama_0171 general secretion pathway protein F (RefSeq) 0.64 Sama_0485 MiaB-like putative RNA modifying enzyme YliG (RefSeq) low > 62
Klebsiella michiganensis M5al 0.35 BWI76_RS05080 type II secretion protein F 0.71 BWI76_RS09115 30S ribosomal protein S12 methylthiotransferase RimO low > 92
Escherichia coli ECRC102 0.35 NIAGMN_28595 gspF type II secretion system inner membrane protein GspF 0.71 NIAGMN_04105 rimO 30S ribosomal protein S12 methylthiotransferase RimO — —
Escherichia coli ECRC98 0.35 JDDGAC_30305 gspF type II secretion system inner membrane protein GspF 0.71 JDDGAC_09695 rimO 30S ribosomal protein S12 methylthiotransferase RimO — —
Escherichia coli ECRC101 0.35 OKFHMN_00275 gspF type II secretion system inner membrane protein GspF 0.71 OKFHMN_06060 rimO 30S ribosomal protein S12 methylthiotransferase RimO — —
Escherichia coli ECRC101 0.35 MCAODC_15275 gspF type II secretion system inner membrane protein GspF 0.71 MCAODC_25275 rimO 30S ribosomal protein S12 methylthiotransferase RimO — —
Pseudomonas fluorescens GW456-L13 0.35 PfGW456L13_264 General secretion pathway protein F 0.96 PfGW456L13_4653 Ribosomal protein S12p Asp88 (E. coli) methylthiotransferase 0.29 60
Pseudomonas fluorescens FW300-N2E3 0.35 AO353_12555 type II secretion system protein GspF 0.96 AO353_16875 ribosomal protein S12 methylthiotransferase RimO low > 101
Alteromonas macleodii MIT1002 0.34 MIT1002_03978 General secretion pathway protein F 0.67 MIT1002_01933 Ribosomal protein S12 methylthiotransferase RimO low > 70
Erwinia tracheiphila SCR3 0.34 LU632_RS25240 gspF type II secretion system inner membrane protein GspF 0.71 LU632_RS09580 rimO 30S ribosomal protein S12 methylthiotransferase RimO low > 74
Escherichia coli ECOR27 0.34 NOLOHH_10985 gspF general secretion pathway protein F 0.71 NOLOHH_22430 rimO 30S ribosomal protein S12 methylthiotransferase RimO — —
Escherichia fergusonii Becca 0.33 EFB2_00847 Type II secretion system protein F 0.71 EFB2_03271 Ribosomal protein S12 methylthiotransferase RimO low > 86
Escherichia coli BL21 0.33 ECD_02836 putative type II secretion protein GspF 0.71 ECD_00802 ribosomal protein S12 methylthiotransferase low > 60
Escherichia coli ECOR38 0.33 HEPCGN_18060 gspF general secretion pathway protein F 0.71 HEPCGN_01970 rimO 30S ribosomal protein S12 methylthiotransferase RimO low > 85
Escherichia coli Nissle 1917 0.33 ECOLIN_RS17075 type II secretion system inner membrane protein GspF 0.71 ECOLIN_RS04440 30S ribosomal protein S12 methylthiotransferase RimO — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.33 OHPLBJKB_00741 Type II secretion system protein F 0.71 OHPLBJKB_02875 Ribosomal protein S12 methylthiotransferase RimO low > 73
Acinetobacter radioresistens SK82 0.33 MPMX26_00283 Type II secretion system protein F 0.68 MPMX26_01294 Ribosomal protein S12 methylthiotransferase RimO low > 36
Sphingomonas koreensis DSMZ 15582 0.32 Ga0059261_3953 Type II secretory pathway, component PulF 0.62 Ga0059261_0282 ribosomal protein S12 methylthiotransferase RimO low > 68
Escherichia coli BW25113 0.31 b3327 gspF general secretory pathway component, cryptic (NCBI) 0.71 b0835 yliG predicted SAM-dependent methyltransferase (NCBI) low > 76
Enterobacter asburiae PDN3 0.31 EX28DRAFT_2077 type II secretion system protein F 0.70 EX28DRAFT_2131 ribosomal protein S12 methylthiotransferase RimO 0.42 19
Enterobacter sp. TBS_079 0.31 MPMX20_01517 Putative type II secretion system protein F 0.70 MPMX20_01473 Ribosomal protein S12 methylthiotransferase RimO low > 85
Pseudomonas putida KT2440 0.28 PP_1048 putative protein secretion protein for export 0.89 PP_1197 ribosomal protein S12 methylthiotransferase low > 96
Mucilaginibacter yixingensis YX-36 DSM 26809 0.19 ABZR88_RS02490 type II secretion system F family protein 0.31 ABZR88_RS15425 30S ribosomal protein S12 methylthiotransferase RimO low > 71

Not shown: 5 genomes with orthologs for PS417_11305 only; 34 genomes with orthologs for PS417_05880 only