| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Phaeobacter inhibens DSM 17395 | 1.0 | PGA1_c11040 | | dnaK suppressor protein DksA | 1.0 | PGA1_c01140 | | phosphoenolpyruvate carboxykinase | 0.40 | 4 |
| Dinoroseobacter shibae DFL-12 | 0.81 | Dshi_1884 | | transcriptional regulator, TraR/DksA family (RefSeq) | 0.86 | Dshi_0213 | | Phosphoenolpyruvate carboxykinase (ATP) (RefSeq) | — | — |
| Bosea sp. OAE506 | 0.67 | ABIE41_RS13460 | | RNA polymerase-binding protein DksA | 0.60 | ABIE41_RS02665 | | phosphoenolpyruvate carboxykinase | low | > 77 |
| Rhodopseudomonas palustris CGA009 | 0.62 | TX73_020255 | | RNA polymerase-binding protein DksA | 0.61 | TX73_001865 | | phosphoenolpyruvate carboxykinase | — | — |
| Rhizobium sp. OAE497 | 0.61 | ABIE40_RS10345 | | RNA polymerase-binding protein DksA | 0.61 | ABIE40_RS19415 | | phosphoenolpyruvate carboxykinase | low | > 107 |
| Sinorhizobium meliloti 1021 | 0.60 | SMc00469 | | DnaK suppressor protein | 0.62 | SMc02562 | | phosphoenolpyruvate carboxykinase | — | — |
| Sphingomonas koreensis DSMZ 15582 | 0.60 | Ga0059261_0274 | | transcriptional regulator, TraR/DksA family | 0.56 | Ga0059261_0913 | | phosphoenolpyruvate carboxykinase (ATP) | low | > 68 |
| Agrobacterium fabrum C58 | 0.59 | Atu1359 | | dnaK deletion suppressor protein | 0.63 | Atu0035 | | phosphoenolpyruvate carboxykinase | low | > 89 |
| Kangiella aquimarina DSM 16071 | 0.38 | B158DRAFT_0056 | | transcriptional regulator, TraR/DksA family | 0.41 | B158DRAFT_2395 | | phosphoenolpyruvate carboxykinase (ATP) | low | > 40 |
| Pseudomonas stutzeri RCH2 | 0.38 | Psest_1003 | | RNA polymerase-binding protein DksA | 0.37 | Psest_3988 | | phosphoenolpyruvate carboxykinase (ATP) | — | — |
| Pseudomonas sp. RS175 | 0.37 | PFR28_03714 | | RNA polymerase-binding transcription factor DksA | 0.36 | PFR28_04874 | | Phosphoenolpyruvate carboxykinase (ATP) | low | > 88 |
| Pseudomonas fluorescens FW300-N1B4 | 0.37 | Pf1N1B4_2862 | | C4-type zinc finger protein, DksA/TraR family | 0.36 | Pf1N1B4_1779 | | Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.37 | AO353_14420 | | molecular chaperone DnaK | 0.35 | AO353_11775 | | phosphoenolpyruvate carboxykinase [ATP] | low | > 101 |
| Pseudomonas fluorescens SBW25 | 0.36 | PFLU_RS25715 | | RNA polymerase-binding protein DksA | 0.35 | PFLU_RS01320 | | phosphoenolpyruvate carboxykinase | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.36 | PFLU_RS25715 | | RNA polymerase-binding protein DksA | 0.35 | PFLU_RS01320 | | phosphoenolpyruvate carboxykinase | low | > 109 |
| Pseudomonas sp. S08-1 | 0.36 | OH686_17280 | | RNA polymerase-binding protein DksA | 0.36 | OH686_11060 | | phosphoenolpyruvate carboxykinase (ATP) | — | — |
| Serratia liquefaciens MT49 | 0.36 | IAI46_21210 | | RNA polymerase-binding protein DksA | 0.40 | IAI46_10700 | | phosphoenolpyruvate carboxykinase (ATP) | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.36 | Psyr_0835 | | transcriptional regulator, TraR/DksA family | 0.37 | Psyr_0168 | | Phosphoenolpyruvate carboxykinase (ATP) | low | > 86 |
| Pseudomonas fluorescens GW456-L13 | 0.36 | PfGW456L13_1528 | | C4-type zinc finger protein, DksA/TraR family | 0.36 | PfGW456L13_420 | | Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) | low | > 87 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.36 | Psyr_0835 | | transcriptional regulator, TraR/DksA family | 0.37 | Psyr_0168 | | Phosphoenolpyruvate carboxykinase (ATP) | low | > 86 |
| Pseudomonas fluorescens FW300-N2C3 | 0.36 | AO356_16095 | | molecular chaperone DnaK | 0.37 | AO356_10140 | | phosphoenolpyruvate carboxykinase [ATP] | low | > 104 |
| Alteromonas macleodii MIT1002 | 0.36 | MIT1002_03690 | | DnaK suppressor protein | 0.41 | MIT1002_03972 | | Phosphoenolpyruvate carboxykinase [ATP] | low | > 70 |
| Pseudomonas simiae WCS417 | 0.35 | PS417_23875 | | molecular chaperone DnaK | 0.36 | PS417_01210 | | hypothetical protein | — | — |
| Dickeya dadantii 3937 | 0.35 | DDA3937_RS15935 | | RNA polymerase-binding protein DksA | 0.40 | DDA3937_RS19610 | | phosphoenolpyruvate carboxykinase (ATP) | — | — |
| Marinobacter adhaerens HP15 | 0.35 | HP15_332 | | transcriptional regulator, TraR/DksA family | 0.40 | HP15_3498 | | phosphoenolpyruvate carboxykinase (ATP) | — | — |
| Escherichia coli ECOR38 | 0.35 | HEPCGN_08295 | dksA | RNA polymerase-binding protein DksA | 0.41 | HEPCGN_15865 | pckA | phosphoenolpyruvate carboxykinase (ATP) | low | > 85 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.35 | OHPLBJKB_03517 | | RNA polymerase-binding transcription factor DksA | 0.41 | OHPLBJKB_00300 | | Phosphoenolpyruvate carboxykinase (ATP) | 0.49 | 42 |
| Escherichia coli BL21 | 0.35 | ECD_00144 | | transcriptional regulator of rRNA transcription; DnaK suppressor protein | 0.41 | ECD_03255 | | phosphoenolpyruvate carboxykinase [ATP] | — | — |
| Escherichia coli ECRC101 | 0.35 | OKFHMN_10345 | dksA | RNA polymerase-binding protein DksA | 0.41 | OKFHMN_17045 | pckA | phosphoenolpyruvate carboxykinase (ATP) | — | — |
| Escherichia coli ECRC62 | 0.35 | BNILDI_08980 | dksA | RNA polymerase-binding protein DksA | 0.41 | BNILDI_02685 | pckA | phosphoenolpyruvate carboxykinase (ATP) | — | — |
| Escherichia coli ECRC99 | 0.35 | KEDOAH_17810 | dksA | RNA polymerase-binding protein DksA | 0.41 | KEDOAH_11095 | pckA | phosphoenolpyruvate carboxykinase (ATP) | — | — |
| Escherichia coli BW25113 | 0.35 | b0145 | dksA | DNA-binding transcriptional regulator of rRNA transcription, DnaK suppressor protein (NCBI) | 0.41 | b3403 | pck | phosphoenolpyruvate carboxykinase (NCBI) | low | > 76 |
| Erwinia tracheiphila SCR3 | 0.35 | LU632_RS20080 | dksA | RNA polymerase-binding protein DksA | 0.40 | LU632_RS22930 | pckA | phosphoenolpyruvate carboxykinase (ATP) | — | — |
| Escherichia coli Nissle 1917 | 0.35 | ECOLIN_RS00815 | | RNA polymerase-binding protein DksA | 0.41 | ECOLIN_RS19435 | | phosphoenolpyruvate carboxykinase (ATP) | — | — |
| Escherichia coli ECRC102 | 0.35 | NIAGMN_08195 | dksA | RNA polymerase-binding protein DksA | 0.41 | NIAGMN_14815 | pckA | phosphoenolpyruvate carboxykinase (ATP) | — | — |
| Escherichia coli ECRC98 | 0.35 | JDDGAC_13940 | dksA | RNA polymerase-binding protein DksA | 0.41 | JDDGAC_20675 | pckA | phosphoenolpyruvate carboxykinase (ATP) | — | — |
| Escherichia coli ECOR27 | 0.35 | NOLOHH_02690 | dksA | RNA polymerase-binding protein DksA | 0.41 | NOLOHH_08835 | pckA | phosphoenolpyruvate carboxykinase (ATP) | — | — |
| Escherichia coli ECRC101 | 0.35 | MCAODC_00860 | dksA | RNA polymerase-binding protein DksA | 0.41 | MCAODC_07575 | pckA | phosphoenolpyruvate carboxykinase (ATP) | — | — |
| Pantoea sp. MT58 | 0.35 | IAI47_15635 | | RNA polymerase-binding protein DksA | 0.41 | IAI47_01830 | | phosphoenolpyruvate carboxykinase (ATP) | low | > 76 |
| Escherichia fergusonii Becca | 0.35 | EFB2_03899 | | RNA polymerase-binding transcription factor DksA | 0.41 | EFB2_00425 | | Phosphoenolpyruvate carboxykinase (ATP) | low | > 86 |
| Dickeya dianthicola 67-19 | 0.34 | HGI48_RS16050 | | RNA polymerase-binding protein DksA | 0.39 | HGI48_RS19740 | | phosphoenolpyruvate carboxykinase (ATP) | low | > 71 |
| Enterobacter asburiae PDN3 | 0.34 | EX28DRAFT_3734 | | transcriptional regulator, TraR/DksA family | 0.40 | EX28DRAFT_4140 | | phosphoenolpyruvate carboxykinase (ATP) | — | — |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.34 | GFF87 | | C4-type zinc finger protein, DksA/TraR family | 0.40 | GFF615 | | Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) | low | > 78 |
| Dickeya dianthicola ME23 | 0.34 | DZA65_RS17135 | | RNA polymerase-binding protein DksA | 0.40 | DZA65_RS20830 | | phosphoenolpyruvate carboxykinase (ATP) | — | — |
| Rahnella sp. WP5 | 0.34 | EX31_RS03250 | | RNA polymerase-binding protein DksA | 0.40 | EX31_RS04780 | | phosphoenolpyruvate carboxykinase (ATP) | low | > 89 |
| Enterobacter sp. TBS_079 | 0.34 | MPMX20_00831 | | RNA polymerase-binding transcription factor DksA | 0.40 | MPMX20_04290 | | Phosphoenolpyruvate carboxykinase (ATP) | low | > 85 |
| Klebsiella michiganensis M5al | 0.34 | BWI76_RS05015 | | transcriptional regulator | 0.41 | BWI76_RS17605 | | phosphoenolpyruvate carboxykinase (ATP) | low | > 92 |
| Pectobacterium carotovorum WPP14 | 0.34 | HER17_RS05580 | | RNA polymerase-binding protein DksA | 0.40 | HER17_RS01710 | | phosphoenolpyruvate carboxykinase (ATP) | low | > 75 |
| Shewanella amazonensis SB2B | 0.33 | Sama_0780 | | TraR/DksA family transcriptional regulator (RefSeq) | 0.43 | Sama_0165 | | Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) (from data) | low | > 62 |
| Shewanella sp. ANA-3 | 0.33 | Shewana3_3404 | | TraR/DksA family transcriptional regulator (RefSeq) | 0.41 | Shewana3_0147 | | phosphoenolpyruvate carboxykinase (RefSeq) | low | > 73 |
| Shewanella loihica PV-4 | 0.33 | Shew_3129 | | TraR/DksA family transcriptional regulator (RefSeq) | 0.40 | Shew_3623 | | phosphoenolpyruvate carboxykinase (RefSeq) | — | — |
| Shewanella oneidensis MR-1 | 0.32 | SO0874 | dksA | DnaK suppressor protein (NCBI ptt file) | 0.41 | SO0162 | pckA | phosphoenolpyruvate carboxykinase (ATP) (NCBI ptt file) | — | — |
| Vibrio cholerae E7946 ATCC 55056 | 0.32 | CSW01_03155 | | RNA polymerase-binding transcription factor DksA | 0.40 | CSW01_13810 | | phosphoenolpyruvate carboxykinase (ATP) | low | > 62 |
Not shown: 24 genomes with orthologs for PGA1_c11040 only; 11 genomes with orthologs for PGA1_c01140 only