Conservation of cofitness between GFF2390 and GFF1082 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

47 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 1.0 GFF2390 16S rRNA (cytosine(967)-C(5))-methyltransferase (EC 2.1.1.176) ## SSU rRNA m5C967 1.0 GFF1082 Putative alanine/glycine transport protein 0.83 19
Escherichia coli ECRC62 0.90 BNILDI_02200 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.74 BNILDI_08190 yaaJ Uncharacterized transporter YaaJ low > 75
Escherichia coli ECOR27 0.90 NOLOHH_09320 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.74 NOLOHH_03415 yaaJ Uncharacterized transporter YaaJ low > 75
Escherichia coli ECOR38 0.90 HEPCGN_16350 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.74 HEPCGN_09090 yaaJ Uncharacterized transporter YaaJ low > 87
Escherichia coli ECRC98 0.90 JDDGAC_21150 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.74 JDDGAC_14680 yaaJ Uncharacterized transporter YaaJ low > 86
Escherichia coli BL21 0.90 ECD_03139 16S rRNA m(5)C967 methyltransferase, SAM-dependent 0.74 ECD_00007 putative transporter low > 61
Escherichia coli HS(pFamp)R (ATCC 700891) 0.90 OHPLBJKB_00415 Ribosomal RNA small subunit methyltransferase B 0.74 OHPLBJKB_03653 Amino-acid carrier protein AlsT low > 73
Escherichia coli BW25113 0.90 b3289 rsmB 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent (NCBI) 0.74 b0007 yaaJ predicted transporter (NCBI) low > 76
Escherichia coli ECRC101 0.90 MCAODC_08050 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.74 MCAODC_01600 yaaJ Uncharacterized transporter YaaJ low > 87
Escherichia coli ECRC99 0.90 KEDOAH_10620 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.74 KEDOAH_17070 yaaJ Uncharacterized transporter YaaJ — —
Escherichia coli ECRC102 0.90 NIAGMN_15290 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.74 NIAGMN_08935 yaaJ Uncharacterized transporter YaaJ — —
Escherichia coli ECRC100 0.90 OKFHMN_17520 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.74 OKFHMN_11085 yaaJ Uncharacterized transporter YaaJ 0.75 64
Escherichia coli Nissle 1917 0.90 ECOLIN_RS18875 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.73 ECOLIN_RS00040 sodium:alanine symporter family protein low > 55
Escherichia fergusonii Becca 0.90 EFB2_00535 Ribosomal RNA small subunit methyltransferase B 0.73 EFB2_04036 Amino-acid carrier protein AlsT low > 86
Klebsiella michiganensis M5al 0.88 BWI76_RS25680 16S rRNA m5C967 methyltransferase 0.70 BWI76_RS04265 sodium:alanine symporter family protein low > 92
Enterobacter asburiae PDN3 0.85 EX28DRAFT_0039 16S rRNA (cytosine(967)-C(5))-methyltransferase 0.73 EX28DRAFT_3619 amino acid carrier protein low > 76
Enterobacter sp. TBS_079 0.83 MPMX20_04196 Ribosomal RNA small subunit methyltransferase B 0.70 MPMX20_00715 Amino-acid carrier protein AlsT low > 85
Serratia liquefaciens MT49 0.74 IAI46_23275 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.54 IAI46_03050 sodium:alanine symporter family protein low > 86
Rahnella sp. WP5 0.71 EX31_RS15985 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.41 EX31_RS03925 alanine:cation symporter family protein low > 89
Vibrio cholerae E7946 ATCC 55056 0.59 CSW01_00225 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.53 CSW01_11935 sodium:alanine symporter family protein low > 62
Shewanella amazonensis SB2B 0.49 Sama_0041 sun protein (RefSeq) 0.48 Sama_0916 sodium:alanine symporter family protein (RefSeq) low > 62
Shewanella loihica PV-4 0.49 Shew_3738 sun protein (RefSeq) 0.42 Shew_1092 amino acid carrier protein (RefSeq) low > 60
Shewanella sp. ANA-3 0.49 Shewana3_0033 sun protein (RefSeq) 0.47 Shewana3_3144 amino acid carrier protein (RefSeq) low > 73
Shewanella oneidensis MR-1 0.49 SO0030 sun sun protein (NCBI ptt file) 0.47 SO3541 sodium:alanine symporter family protein (NCBI ptt file) low > 76
Alteromonas macleodii MIT1002 0.43 MIT1002_00018 Ribosomal RNA small subunit methyltransferase B 0.41 MIT1002_01494 Amino-acid carrier protein AlsT low > 70
Pseudomonas stutzeri RCH2 0.43 Psest_0021 ribosomal RNA small subunit methyltransferase RsmB 0.39 Psest_4077 amino acid carrier protein low > 67
Pseudomonas sp. S08-1 0.41 OH686_12525 16S rRNA (cytosine(967)-C(5))-methyltransferase 0.33 OH686_13280 Probable AGCS sodium/alanine/glycine symporter low > 80
Pseudomonas fluorescens FW300-N2E2 0.41 Pf6N2E2_4121 Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) 0.39 Pf6N2E2_4086 sodium/alanine transporter low > 103
Pseudomonas fluorescens FW300-N2C3 0.41 AO356_11275 16S rRNA methyltransferase 0.39 AO356_11095 sodium:alanine symporter low > 104
Pseudomonas fluorescens FW300-N2E3 0.41 AO353_10630 16S rRNA methyltransferase 0.38 AO353_09955 sodium:alanine symporter low > 101
Pseudomonas fluorescens FW300-N1B4 0.41 Pf1N1B4_1914 Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) 0.39 Pf1N1B4_2024 sodium/alanine transporter low > 87
Pseudomonas syringae pv. syringae B728a ΔmexB 0.41 Psyr_0017 16S rRNA m(5)C-967 methyltransferase 0.41 Psyr_5052 Sodium:alanine symporter low > 86
Pseudomonas syringae pv. syringae B728a 0.41 Psyr_0017 16S rRNA m(5)C-967 methyltransferase 0.41 Psyr_5052 Sodium:alanine symporter low > 86
Marinobacter adhaerens HP15 0.41 HP15_3742 Fmu, rRNA SAM-dependent methyltransferase 0.24 HP15_3907 sodium/alanine symporter family protein low > 73
Pseudomonas fluorescens SBW25 0.41 PFLU_RS00080 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.38 PFLU_RS29820 alanine:cation symporter family protein low > 109
Pseudomonas fluorescens SBW25-INTG 0.41 PFLU_RS00080 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.38 PFLU_RS29820 alanine:cation symporter family protein low > 109
Pseudomonas sp. RS175 0.41 PFR28_04663 Ribosomal RNA small subunit methyltransferase B 0.39 PFR28_04500 Amino-acid carrier protein AlsT low > 88
Pseudomonas fluorescens GW456-L13 0.41 PfGW456L13_652 Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) 0.38 PfGW456L13_741 sodium/alanine transporter low > 87
Pseudomonas simiae WCS417 0.40 PS417_00085 16S rRNA methyltransferase 0.38 PS417_28135 sodium:alanine symporter low > 88
Pseudomonas putida KT2440 0.40 PP_0066 Ribosomal RNA small subunit methyltransferase B 0.37 PP_0496 Sodium/alanine symporter low > 96
Xanthomonas campestris pv. campestris strain 8004 0.32 Xcc-8004.4741.1 hypothetical protein 0.31 Xcc-8004.1265.1 sodium/alanine symporter family protein low > 74
Acinetobacter radioresistens SK82 0.32 MPMX26_03021 Ribosomal RNA small subunit methyltransferase B 0.38 MPMX26_00623 Amino-acid carrier protein AlsT low > 36
Paraburkholderia sabiae LMG 24235 0.31 QEN71_RS00175 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.18 QEN71_RS14800 amino acid carrier protein low > 153
Castellaniella sp019104865 MT123 0.30 ABCV34_RS14225 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.22 ABCV34_RS11085 sodium:alanine symporter family protein low > 48
Dinoroseobacter shibae DFL-12 0.19 Dshi_3033 Fmu (Sun) domain protein (RefSeq) 0.20 Dshi_1808 amino acid carrier protein (RefSeq) low > 64
Phaeobacter inhibens DSM 17395 0.19 PGA1_c32880 putative ribosomal RNA small subunit methyltransferase B 0.24 PGA1_78p00280 putative sodium/alanine symporter low > 62
Fusobacterium nucleatum SB010 0.19 HUW76_07955 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.35 HUW76_08215 alanine:cation symporter family protein low > 35
Desulfovibrio vulgaris Hildenborough JW710 0.13 DVU3363 sun sun protein (TIGR) 0.26 DVU0724 sodium/alanine symporter family protein (TIGR) low > 55

Not shown: 42 genomes with orthologs for GFF2390 only; 9 genomes with orthologs for GFF1082 only