Conservation of cofitness between Psest_1505 and Psest_1103 in Pseudomonas stutzeri RCH2

51 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas stutzeri RCH2 1.0 Psest_1505 Organic radical activating enzymes 1.0 Psest_1103 GTP-binding protein YchF 0.24 18
Pseudomonas sp. S08-1 0.84 OH686_19175 7-carboxy-7-deazaguanine synthase 0.93 OH686_07965 GTP-binding and nucleic acid-binding protein YchF low > 80
Pseudomonas sp. RS175 0.81 PFR28_03404 7-carboxy-7-deazaguanine synthase 0.91 PFR28_03664 Ribosome-binding ATPase YchF 0.19 87
Pseudomonas fluorescens SBW25-INTG 0.80 PFLU_RS24045 7-carboxy-7-deazaguanine synthase QueE 0.89 PFLU_RS03610 redox-regulated ATPase YchF low > 109
Pseudomonas fluorescens SBW25 0.80 PFLU_RS24045 7-carboxy-7-deazaguanine synthase QueE 0.89 PFLU_RS03610 redox-regulated ATPase YchF low > 109
Pseudomonas fluorescens FW300-N2C3 0.80 AO356_18065 7-carboxy-7-deazaguanine synthase 0.91 AO356_16450 GTP-binding protein low > 104
Pseudomonas putida KT2440 0.80 PP_1225 7-carboxy-7-deazaguanine synthase 0.90 PP_0719 ribosome-associated potassium-dependent informational ATP/GTPase low > 96
Pseudomonas fluorescens FW300-N1B4 0.80 Pf1N1B4_629 Queuosine Biosynthesis QueE Radical SAM 0.89 Pf1N1B4_2912 GTP-binding and nucleic acid-binding protein YchF low > 87
Pseudomonas simiae WCS417 0.79 PS417_22405 7-carboxy-7-deazaguanine synthase 0.90 PS417_03560 GTP-binding protein low > 88
Pseudomonas syringae pv. syringae B728a 0.79 Psyr_1418 Radical SAM 0.89 Psyr_0941 Conserved hypothetical protein 92 0.29 35
Pseudomonas syringae pv. syringae B728a ΔmexB 0.79 Psyr_1418 Radical SAM 0.89 Psyr_0941 Conserved hypothetical protein 92 — —
Pseudomonas fluorescens GW456-L13 0.79 PfGW456L13_1861 Queuosine Biosynthesis QueE Radical SAM 0.91 PfGW456L13_1574 GTP-binding and nucleic acid-binding protein YchF low > 87
Pseudomonas fluorescens FW300-N2E3 0.79 AO353_03540 7-carboxy-7-deazaguanine synthase 0.89 AO353_14740 GTP-binding protein low > 101
Xanthomonas campestris pv. campestris strain 8004 0.64 Xcc-8004.1449.1 Queuosine Biosynthesis QueE Radical SAM 0.70 Xcc-8004.4168.1 GTP-binding and nucleic acid-binding protein YchF low > 74
Lysobacter sp. OAE881 0.62 ABIE51_RS05100 7-carboxy-7-deazaguanine synthase QueE 0.70 ABIE51_RS05745 redox-regulated ATPase YchF 0.42 7
Acinetobacter radioresistens SK82 0.61 MPMX26_02174 7-carboxy-7-deazaguanine synthase 0.78 MPMX26_01861 Ribosome-binding ATPase YchF 0.72 14
Dyella japonica UNC79MFTsu3.2 0.61 ABZR86_RS10790 7-carboxy-7-deazaguanine synthase QueE 0.70 ABZR86_RS22010 redox-regulated ATPase YchF low > 74
Dechlorosoma suillum PS 0.59 Dsui_0476 organic radical activating enzyme 0.65 Dsui_1039 GTP-binding protein YchF — —
Rhodanobacter sp. FW510-T8 0.58 OKGIIK_01890 7-carboxy-7-deazaguanine synthase 0.67 OKGIIK_10565 Ribosome-binding ATPase YchF low > 52
Rhodanobacter denitrificans MT42 0.57 LRK55_RS04640 7-carboxy-7-deazaguanine synthase QueE 0.67 LRK55_RS03425 redox-regulated ATPase YchF low > 63
Rhodanobacter denitrificans FW104-10B01 0.57 LRK54_RS04860 7-carboxy-7-deazaguanine synthase QueE 0.67 LRK54_RS03675 redox-regulated ATPase YchF low > 59
Kangiella aquimarina DSM 16071 0.56 B158DRAFT_1144 Organic radical activating enzymes 0.70 B158DRAFT_2052 GTP-binding protein YchF low > 40
Phaeobacter inhibens DSM 17395 0.18 PGA1_c05620 putative 7-cyano-7-deazaguanosine biosynthesis protein QueE 0.57 PGA1_c04950 GTP-dependent nucleic acid-binding protein EngD low > 62
Phocaeicola dorei CL03T12C01 0.18 ABI39_RS10600 radical SAM protein 0.57 ABI39_RS05450 redox-regulated ATPase YchF low > 72
Serratia liquefaciens MT49 0.17 IAI46_03675 7-carboxy-7-deazaguanine synthase QueE 0.69 IAI46_10240 redox-regulated ATPase YchF — —
Bacteroides stercoris CC31F 0.16 HMPREF1181_RS13885 radical SAM protein 0.53 HMPREF1181_RS02000 redox-regulated ATPase YchF low > 56
Shewanella amazonensis SB2B 0.16 Sama_1825 radical activating enzyme (RefSeq) 0.73 Sama_2571 GTP-dependent nucleic acid-binding protein EngD (RefSeq) low > 62
Alteromonas macleodii MIT1002 0.16 MIT1002_01264 7-carboxy-7-deazaguanine synthase 0.70 MIT1002_01504 Ribosome-binding ATPase YchF low > 70
Shewanella sp. ANA-3 0.16 Shewana3_2163 radical activating enzyme (RefSeq) 0.73 Shewana3_1012 GTP-dependent nucleic acid-binding protein EngD (RefSeq) low > 73
Rahnella sp. WP5 0.16 EX31_RS07920 7-carboxy-7-deazaguanine synthase QueE 0.69 EX31_RS07380 redox-regulated ATPase YchF low > 89
Pantoea sp. MT58 0.16 IAI47_04140 7-carboxy-7-deazaguanine synthase QueE 0.71 IAI47_11310 redox-regulated ATPase YchF low > 76
Enterobacter sp. TBS_079 0.16 MPMX20_03645 7-carboxy-7-deazaguanine synthase 0.69 MPMX20_02645 Ribosome-binding ATPase YchF low > 85
Escherichia coli ECOR38 0.16 HEPCGN_19205 queE 7-carboxy-7-deazaguanine synthase QueE 0.71 HEPCGN_24875 ychF redox-regulated ATPase YchF — —
Escherichia fergusonii Becca 0.16 EFB2_01141 7-carboxy-7-deazaguanine synthase 0.71 EFB2_02724 Ribosome-binding ATPase YchF low > 86
Escherichia coli Nissle 1917 0.16 ECOLIN_RS15475 7-carboxy-7-deazaguanine synthase QueE 0.71 ECOLIN_RS07280 redox-regulated ATPase YchF — —
Pectobacterium carotovorum WPP14 0.16 HER17_RS04200 7-carboxy-7-deazaguanine synthase QueE 0.71 HER17_RS10445 redox-regulated ATPase YchF low > 75
Enterobacter asburiae PDN3 0.15 EX28DRAFT_2855 putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE 0.69 EX28DRAFT_0821 GTP-binding protein YchF — —
Escherichia coli ECRC98 0.15 JDDGAC_23965 queE 7-carboxy-7-deazaguanine synthase QueE 0.71 JDDGAC_06165 ychF redox-regulated ATPase YchF — —
Escherichia coli ECRC99 0.15 KEDOAH_07830 queE 7-carboxy-7-deazaguanine synthase QueE 0.71 KEDOAH_25405 ychF redox-regulated ATPase YchF — —
Escherichia coli ECRC102 0.15 NIAGMN_18070 queE 7-carboxy-7-deazaguanine synthase QueE 0.71 NIAGMN_27825 ychF redox-regulated ATPase YchF — —
Escherichia coli BW25113 0.15 b2777 ygcF hypothetical protein (NCBI) 0.71 b1203 ychF translation-associated GTPase (NCBI) — —
Escherichia coli BL21 0.15 ECD_02622 7-carboxy-7-deazaguanine synthase; queosine biosynthesis 0.71 ECD_01178 catalase inhibitor protein; ATPase, K+-dependent, ribosome-associated — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.15 OHPLBJKB_00957 7-carboxy-7-deazaguanine synthase 0.71 OHPLBJKB_02484 Ribosome-binding ATPase YchF low > 73
Escherichia coli ECRC101 0.15 OKFHMN_20300 queE 7-carboxy-7-deazaguanine synthase QueE 0.71 OKFHMN_28410 ychF redox-regulated ATPase YchF — —
Escherichia coli ECRC101 0.15 MCAODC_10825 queE 7-carboxy-7-deazaguanine synthase QueE 0.71 MCAODC_21850 ychF redox-regulated ATPase YchF — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.15 CA264_07135 7-carboxy-7-deazaguanine synthase QueE 0.58 CA264_07495 GTP-binding protein YchF low > 74
Erwinia tracheiphila SCR3 0.15 LU632_RS06390 queE 7-carboxy-7-deazaguanine synthase QueE 0.72 LU632_RS13950 ychF redox-regulated ATPase YchF low > 74
Klebsiella michiganensis M5al 0.15 BWI76_RS22780 7-carboxy-7-deazaguanine synthase QueE 0.70 BWI76_RS17485 GTP-binding protein YchF — —
Escherichia coli ECRC62 0.15 BNILDI_10675 queE 7-carboxy-7-deazaguanine synthase QueE 0.71 BNILDI_18805 ychF redox-regulated ATPase YchF — —
Escherichia coli ECOR27 0.15 NOLOHH_12170 queE 7-carboxy-7-deazaguanine synthase QueE 0.71 NOLOHH_20650 ychF redox-regulated ATPase YchF — —
Sinorhizobium meliloti 1021 0.15 SM_b20938 hypothetical protein 0.58 SMc02695 GTP-dependent nucleic acid-binding protein EngD low > 103
Desulfovibrio vulgaris Hildenborough JW710 0.12 DVU2658 conserved hypothetical protein (TIGR) 0.54 DVU1429 GTP-binding protein (TIGR) 0.37 22

Not shown: 1 genomes with orthologs for Psest_1505 only; 51 genomes with orthologs for Psest_1103 only