Conservation of cofitness between ECD_03237 and ECD_02595 in Escherichia coli BL21

49 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BL21 1.0 ECD_03237 phosphoglycolate phosphatase 1.0 ECD_02595 tRNA(Glu) pseudouridine(13) synthase low > 61
Escherichia coli BW25113 1.00 b3385 gph phosphoglycolate phosphatase (NCBI) 1.00 b2745 truD tRNA pseudouridine synthase D (NCBI) low > 76
Escherichia coli ECRC102 0.99 NIAGMN_14905 gph phosphoglycolate phosphatase 0.99 NIAGMN_18245 truD tRNA pseudouridine(13) synthase TruD — —
Escherichia coli ECRC62 0.99 BNILDI_02595 gph phosphoglycolate phosphatase 1.00 BNILDI_10840 truD tRNA pseudouridine(13) synthase TruD low > 75
Escherichia coli ECRC101 0.99 MCAODC_07665 gph phosphoglycolate phosphatase 0.99 MCAODC_11000 truD tRNA pseudouridine(13) synthase TruD low > 87
Escherichia coli ECRC99 0.99 KEDOAH_11005 gph phosphoglycolate phosphatase 0.99 KEDOAH_07665 truD tRNA pseudouridine(13) synthase TruD — —
Escherichia coli ECOR38 0.99 HEPCGN_15955 gph phosphoglycolate phosphatase 0.99 HEPCGN_19655 truD tRNA pseudouridine(13) synthase TruD low > 87
Escherichia fergusonii Becca 0.99 EFB2_00443 Phosphoglycolate phosphatase 0.99 EFB2_01165 tRNA pseudouridine synthase D low > 86
Escherichia coli Nissle 1917 0.99 ECOLIN_RS19340 phosphoglycolate phosphatase 0.99 ECOLIN_RS15350 tRNA pseudouridine(13) synthase TruD low > 55
Escherichia coli HS(pFamp)R (ATCC 700891) 0.99 OHPLBJKB_00318 Phosphoglycolate phosphatase 1.00 OHPLBJKB_00988 tRNA pseudouridine synthase D low > 73
Escherichia coli ECRC100 0.99 OKFHMN_17135 gph phosphoglycolate phosphatase 0.99 OKFHMN_20475 truD tRNA pseudouridine(13) synthase TruD low > 80
Escherichia coli ECOR27 0.99 NOLOHH_08925 gph phosphoglycolate phosphatase 0.99 NOLOHH_12290 truD tRNA pseudouridine(13) synthase TruD low > 75
Escherichia coli ECRC98 0.99 JDDGAC_20765 gph phosphoglycolate phosphatase 0.99 JDDGAC_24140 truD tRNA pseudouridine(13) synthase TruD low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.91 GFF634 Phosphoglycolate phosphatase (EC 3.1.3.18) 0.90 GFF4793 tRNA pseudouridine 13 synthase (EC 4.2.1.-) low > 78
Enterobacter asburiae PDN3 0.80 EX28DRAFT_4157 2-phosphoglycolate phosphatase, prokaryotic 0.87 EX28DRAFT_2841 tRNA pseudouridine synthase, TruD family low > 76
Enterobacter sp. TBS_079 0.80 MPMX20_04274 Phosphoglycolate phosphatase 0.86 MPMX20_03631 tRNA pseudouridine synthase D low > 85
Klebsiella michiganensis M5al 0.79 BWI76_RS26065 phosphoglycolate phosphatase 0.86 BWI76_RS22665 tRNA pseudouridine(13) synthase TruD low > 92
Dickeya dianthicola ME23 0.56 DZA65_RS20740 phosphoglycolate phosphatase 0.58 DZA65_RS18035 tRNA pseudouridine(13) synthase TruD low > 75
Dickeya dadantii 3937 0.56 DDA3937_RS19525 phosphoglycolate phosphatase 0.60 DDA3937_RS16890 tRNA pseudouridine(13) synthase TruD low > 74
Dickeya dianthicola 67-19 0.56 HGI48_RS19655 phosphoglycolate phosphatase 0.59 HGI48_RS16960 tRNA pseudouridine(13) synthase TruD low > 71
Serratia liquefaciens MT49 0.55 IAI46_23680 phosphoglycolate phosphatase 0.65 IAI46_03765 tRNA pseudouridine(13) synthase TruD low > 86
Pectobacterium carotovorum WPP14 0.55 HER17_RS01800 phosphoglycolate phosphatase 0.60 HER17_RS04335 tRNA pseudouridine(13) synthase TruD low > 75
Pantoea sp. MT58 0.53 IAI47_01915 phosphoglycolate phosphatase 0.63 IAI47_04215 tRNA pseudouridine(13) synthase TruD low > 76
Erwinia tracheiphila SCR3 0.51 LU632_RS22845 phosphoglycolate phosphatase 0.61 LU632_RS06460 truD tRNA pseudouridine(13) synthase TruD low > 74
Rahnella sp. WP5 0.48 EX31_RS04700 phosphoglycolate phosphatase 0.61 EX31_RS07845 tRNA pseudouridine(13) synthase TruD low > 89
Shewanella loihica PV-4 0.37 Shew_0220 phosphoglycolate phosphatase (RefSeq) 0.40 Shew_1209 pseudouridylate synthase (RefSeq) low > 60
Pseudomonas putida KT2440 0.37 PP_0416 Phosphoglycolate phosphatase 0.24 PP_1619 tRNA pseudouridine synthase D low > 96
Shewanella amazonensis SB2B 0.37 Sama_3361 phosphoglycolate phosphatase (RefSeq) 0.38 Sama_1040 pseudouridylate synthase (RefSeq) low > 62
Pseudomonas fluorescens GW456-L13 0.34 PfGW456L13_1216 Phosphoglycolate phosphatase (EC 3.1.3.18) 0.29 PfGW456L13_4679 tRNA pseudouridine 13 synthase (EC 4.2.1.-) low > 87
Shewanella sp. ANA-3 0.34 Shewana3_3887 phosphoglycolate phosphatase (RefSeq) 0.38 Shewana3_1120 tRNA pseudouridine synthase D, TruD (RefSeq) low > 73
Pseudomonas fluorescens FW300-N1B4 0.34 Pf1N1B4_2544 Phosphoglycolate phosphatase (EC 3.1.3.18) 0.29 Pf1N1B4_3111 tRNA pseudouridine 13 synthase (EC 4.2.1.-) low > 87
Vibrio cholerae E7946 ATCC 55056 0.34 CSW01_13280 phosphoglycolate phosphatase 0.38 CSW01_02815 tRNA pseudouridine(13) synthase TruD low > 62
Shewanella oneidensis MR-1 0.34 SO0293 gph phosphoglycolate phosphatase (NCBI ptt file) 0.37 SO3436 conserved hypothetical protein (NCBI ptt file) low > 76
Alteromonas macleodii MIT1002 0.33 MIT1002_02231 Phosphoglycolate phosphatase 0.39 MIT1002_00629 tRNA pseudouridine synthase D low > 70
Pseudomonas fluorescens FW300-N2C3 0.33 AO356_14415 phosphoglycolate phosphatase 0.28 AO356_05905 pseudouridine synthase low > 104
Pseudomonas fluorescens FW300-N2E3 0.33 AO353_07235 phosphoglycolate phosphatase 0.29 AO353_16595 pseudouridine synthase low > 101
Pseudomonas fluorescens FW300-N2E2 0.33 Pf6N2E2_4821 Phosphoglycolate phosphatase (EC 3.1.3.18) 0.29 Pf6N2E2_3041 tRNA pseudouridine 13 synthase (EC 4.2.1.-) low > 103
Pseudomonas sp. RS175 0.33 PFR28_04048 Phosphoglycolate phosphatase 0.28 PFR28_00423 tRNA pseudouridine synthase D low > 88
Pseudomonas simiae WCS417 0.33 PS417_25730 phosphoglycolate phosphatase 0.28 PS417_06345 pseudouridine synthase low > 88
Pseudomonas fluorescens SBW25 0.32 PFLU_RS27385 phosphoglycolate phosphatase 0.28 PFLU_RS06410 tRNA pseudouridine(13) synthase TruD low > 109
Pseudomonas fluorescens SBW25-INTG 0.32 PFLU_RS27385 phosphoglycolate phosphatase 0.28 PFLU_RS06410 tRNA pseudouridine(13) synthase TruD low > 109
Pseudomonas stutzeri RCH2 0.31 Psest_3651 2-phosphoglycolate phosphatase, prokaryotic 0.29 Psest_2811 Uncharacterized conserved protein low > 67
Marinobacter adhaerens HP15 0.28 HP15_3287 phosphoglycolate phosphatase 0.20 HP15_1278 pseudouridylate synthase low > 73
Lysobacter sp. OAE881 0.23 ABIE51_RS13485 phosphoglycolate phosphatase 0.29 ABIE51_RS06470 tRNA pseudouridine(13) synthase TruD low > 62
Xanthomonas campestris pv. campestris strain 8004 0.23 Xcc-8004.4534.1 Phosphoglycolate phosphatase (EC 3.1.3.18) 0.27 Xcc-8004.3137.1 tRNA pseudouridine 13 synthase (EC 4.2.1.-) low > 74
Kangiella aquimarina DSM 16071 0.20 B158DRAFT_2318 2-phosphoglycolate phosphatase, prokaryotic 0.31 B158DRAFT_2295 Uncharacterized conserved protein low > 40
Rhodanobacter denitrificans FW104-10B01 0.19 LRK54_RS02460 phosphoglycolate phosphatase 0.33 LRK54_RS16640 tRNA pseudouridine(13) synthase TruD low > 59
Rhodanobacter denitrificans MT42 0.19 LRK55_RS02215 phosphoglycolate phosphatase 0.33 LRK55_RS16365 tRNA pseudouridine(13) synthase TruD low > 63
Rhodanobacter sp. FW510-T8 0.19 OKGIIK_09515 gph phosphoglycolate phosphatase 0.35 OKGIIK_08130 truD tRNA pseudouridine(13) synthase TruD low > 52
Dyella japonica UNC79MFTsu3.2 0.18 ABZR86_RS08775 HAD-IA family hydrolase 0.34 ABZR86_RS06605 tRNA pseudouridine(13) synthase TruD low > 74

Not shown: 38 genomes with orthologs for ECD_03237 only; 3 genomes with orthologs for ECD_02595 only