Conservation of cofitness between ECD_03418 and ECD_02504 in Escherichia coli BL21

49 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BL21 1.0 ECD_03418 D-xylose transporter subunit 1.0 ECD_02504 recombination and repair protein 0.62 36
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_00138 D-xylose-binding periplasmic protein 1.00 OHPLBJKB_01091 DNA repair protein RecN low > 73
Escherichia coli ECRC101 1.00 MCAODC_06465 xylF D-xylose ABC transporter substrate-binding protein 0.99 MCAODC_11670 recN DNA repair protein RecN low > 87
Escherichia coli ECRC100 1.00 OKFHMN_15950 xylF D-xylose ABC transporter substrate-binding protein 0.99 OKFHMN_21145 recN DNA repair protein RecN low > 80
Escherichia coli BW25113 1.00 b3566 xylF D-xylose transporter subunit (NCBI) 1.00 b2616 recN recombination and repair protein (NCBI) low > 76
Escherichia coli ECRC98 1.00 JDDGAC_19580 xylF D-xylose ABC transporter substrate-binding protein 0.99 JDDGAC_24810 recN DNA repair protein RecN low > 86
Escherichia coli ECRC99 1.00 KEDOAH_12200 xylF D-xylose ABC transporter substrate-binding protein 0.99 KEDOAH_07075 recN DNA repair protein RecN — —
Escherichia coli ECRC102 1.00 NIAGMN_13710 xylF D-xylose ABC transporter substrate-binding protein 0.99 NIAGMN_18915 recN DNA repair protein RecN — —
Escherichia coli ECRC62 1.00 BNILDI_03650 xylF D-xylose ABC transporter substrate-binding protein 1.00 BNILDI_11620 recN DNA repair protein RecN low > 75
Escherichia coli Nissle 1917 1.00 ECOLIN_RS20395 D-xylose ABC transporter substrate-binding protein 0.99 ECOLIN_RS14775 DNA repair protein RecN low > 55
Escherichia coli ECOR38 1.00 HEPCGN_14835 xylF D-xylose ABC transporter substrate-binding protein 0.99 HEPCGN_20265 recN DNA repair protein RecN low > 87
Escherichia coli ECOR27 1.00 NOLOHH_07895 xylF D-xylose ABC transporter substrate-binding protein 1.00 NOLOHH_12815 recN DNA repair protein RecN 0.58 6
Escherichia fergusonii Becca 1.00 EFB2_00241 D-xylose-binding periplasmic protein 0.99 EFB2_01277 DNA repair protein RecN low > 86
Klebsiella michiganensis M5al 0.91 BWI76_RS27030 D-xylose transporter subunit XylF 0.84 BWI76_RS21560 DNA repair protein RecN low > 92
Enterobacter sp. TBS_079 0.89 MPMX20_00164 D-xylose-binding periplasmic protein 0.86 MPMX20_03486 DNA repair protein RecN low > 85
Enterobacter asburiae PDN3 0.89 EX28DRAFT_3831 D-xylose ABC transporter, substrate-binding protein 0.87 EX28DRAFT_2719 DNA repair protein RecN low > 76
Rahnella sp. WP5 0.84 EX31_RS09760 D-xylose ABC transporter substrate-binding protein 0.76 EX31_RS21760 DNA repair protein RecN low > 89
Pantoea sp. MT58 0.83 IAI47_00190 D-xylose ABC transporter substrate-binding protein 0.77 IAI47_04810 DNA repair protein RecN low > 76
Serratia liquefaciens MT49 0.82 IAI46_00285 D-xylose ABC transporter substrate-binding protein 0.77 IAI46_19635 DNA repair protein RecN low > 86
Dickeya dadantii 3937 0.82 DDA3937_RS20930 D-xylose ABC transporter substrate-binding protein 0.73 DDA3937_RS04325 DNA repair protein RecN low > 74
Dickeya dianthicola ME23 0.82 DZA65_RS00315 D-xylose ABC transporter substrate-binding protein 0.72 DZA65_RS04235 DNA repair protein RecN low > 75
Dickeya dianthicola 67-19 0.82 HGI48_RS00315 D-xylose ABC transporter substrate-binding protein 0.72 HGI48_RS04320 DNA repair protein RecN low > 71
Pectobacterium carotovorum WPP14 0.79 HER17_RS21080 D-xylose ABC transporter substrate-binding protein 0.72 HER17_RS17420 DNA repair protein RecN low > 75
Herbaspirillum seropedicae SmR1 0.62 HSERO_RS22460 xylose ABC transporter substrate-binding protein 0.38 HSERO_RS03060 DNA repair protein low > 78
Dyella japonica UNC79MFTsu3.2 0.61 ABZR86_RS14420 D-xylose ABC transporter substrate-binding protein 0.34 ABZR86_RS05665 DNA repair protein RecN low > 74
Ralstonia sp. UNC404CL21Col 0.60 ABZR87_RS18220 D-xylose ABC transporter substrate-binding protein 0.36 ABZR87_RS01065 DNA repair protein RecN low > 80
Burkholderia phytofirmans PsJN 0.60 BPHYT_RS32820 xylose ABC transporter substrate-binding protein 0.35 BPHYT_RS03560 DNA repair protein low > 109
Pseudomonas fluorescens FW300-N2C3 0.60 AO356_28505 sugar ABC transporter substrate-binding protein 0.38 AO356_07510 DNA repair protein RecN low > 104
Pseudomonas fluorescens FW300-N2E2 0.60 Pf6N2E2_1455 Xylose ABC transporter, periplasmic xylose-binding protein XylF 0.39 Pf6N2E2_3370 DNA repair protein RecN low > 103
Pseudomonas simiae WCS417 0.60 PS417_10940 sugar ABC transporter substrate-binding protein 0.39 PS417_24070 recombination and repair protein low > 88
Paraburkholderia graminis OAS925 0.60 ABIE53_004930 D-xylose transport system substrate-binding protein 0.35 ABIE53_000856 DNA repair protein RecN (Recombination protein N) low > 113
Paraburkholderia sabiae LMG 24235 0.60 QEN71_RS25870 D-xylose ABC transporter substrate-binding protein 0.38 QEN71_RS26535 DNA repair protein RecN low > 153
Pseudomonas sp. RS175 0.60 PFR28_02349 D-xylose-binding periplasmic protein 0.38 PFR28_00071 DNA repair protein RecN low > 88
Pseudomonas fluorescens SBW25 0.59 PFLU_RS11300 D-xylose ABC transporter substrate-binding protein 0.38 PFLU_RS25910 DNA repair protein RecN low > 109
Paraburkholderia bryophila 376MFSha3.1 0.59 H281DRAFT_03877 xylose-binding protein 0.35 H281DRAFT_04692 DNA replication and repair protein RecN low > 103
Pseudomonas syringae pv. syringae B728a ΔmexB 0.59 Psyr_2884 xylose-binding protein 0.38 Psyr_4197 DNA replication and repair protein RecN low > 86
Pseudomonas fluorescens SBW25-INTG 0.59 PFLU_RS11300 D-xylose ABC transporter substrate-binding protein 0.38 PFLU_RS25910 DNA repair protein RecN low > 109
Pseudomonas syringae pv. syringae B728a 0.59 Psyr_2884 xylose-binding protein 0.38 Psyr_4197 DNA replication and repair protein RecN low > 86
Ralstonia solanacearum GMI1000 0.58 RS_RS24945 D-xylose ABC transporter substrate-binding protein 0.35 RS_RS13275 DNA repair protein RecN low > 80
Ralstonia solanacearum PSI07 0.56 RPSI07_RS07635 D-xylose ABC transporter substrate-binding protein 0.36 RPSI07_RS11890 DNA repair protein RecN low > 81
Ralstonia solanacearum IBSBF1503 0.55 RALBFv3_RS23505 D-xylose ABC transporter substrate-binding protein 0.36 RALBFv3_RS05415 DNA repair protein RecN — —
Ralstonia solanacearum UW163 0.55 UW163_RS16755 D-xylose ABC transporter substrate-binding protein 0.36 UW163_RS08210 DNA repair protein RecN — —
Variovorax sp. SCN45 0.38 GFF5603 D-xylose ABC transporter, substrate-binding protein XylF 0.32 GFF2357 DNA repair protein RecN low > 127
Sinorhizobium meliloti 1021 0.37 SM_b20902 sugar uptake ABC transporter substrate-binding protein precursor 0.27 SMc01877 DNA repair protein low > 103
Phaeobacter inhibens DSM 17395 0.37 PGA1_262p00430 glucose transporter, periplasmic substrate-binding component (from data) 0.24 PGA1_c09720 DNA repair protein RecN low > 62
Dinoroseobacter shibae DFL-12 0.36 Dshi_2000 xylitol ABC transporter, periplasmic substrate-binding protein (from data) 0.24 Dshi_2413 DNA repair protein RecN (RefSeq) low > 64
Agrobacterium fabrum C58 0.31 Atu3576 xylose ABC transporter substrate-binding protein 0.26 Atu2083 DNA repair protein RecN low > 89
Azospirillum sp. SherDot2 0.30 MPMX19_03028 D-xylose-binding periplasmic protein 0.24 MPMX19_01601 DNA repair protein RecN low > 112
Acidovorax sp. GW101-3H11 0.28 Ac3H11_610 L-arabinose-binding periplasmic protein precursor AraF (TC 3.A.1.2.2) 0.32 Ac3H11_3460 DNA repair protein RecN low > 79
Azospirillum brasilense Sp245 0.27 AZOBR_RS31240 sugar ABC transporter substrate-binding protein 0.25 AZOBR_RS12395 DNA repair protein RecN — —

Not shown: 2 genomes with orthologs for ECD_03418 only; 50 genomes with orthologs for ECD_02504 only