| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Escherichia coli BL21 | 1.0 | ECD_01084 | | DUF177 family protein | 1.0 | ECD_00392 | | HU, DNA-binding transcriptional regulator, beta subunit | 0.79 | 11 |
| Escherichia coli ECRC100 | 1.00 | OKFHMN_03600 | yceD | 23S rRNA accumulation protein YceD | 0.99 | OKFHMN_08315 | hupB | DNA-binding protein HU-beta | low | > 80 |
| Escherichia coli ECOR38 | 1.00 | HEPCGN_23880 | yceD | 23S rRNA accumulation protein YceD | 0.99 | HEPCGN_06930 | hupB | DNA-binding protein HU-beta | low | > 87 |
| Escherichia fergusonii Becca | 1.00 | EFB2_02887 | | Large ribosomal RNA subunit accumulation protein YceD | 1.00 | EFB2_03617 | | DNA-binding protein HU-beta | low | > 86 |
| Escherichia coli Nissle 1917 | 1.00 | ECOLIN_RS06290 | | 23S rRNA accumulation protein YceD | 0.99 | ECOLIN_RS02640 | | nucleoid-associated protein HU-beta | low | > 55 |
| Escherichia coli ECOR27 | 1.00 | NOLOHH_21130 | yceD | 23S rRNA accumulation protein YceD | 0.99 | NOLOHH_01250 | hupB | DNA-binding protein HU-beta | low | > 75 |
| Escherichia coli BW25113 | 1.00 | b1088 | yceD | hypothetical protein (NCBI) | 1.00 | b0440 | hupB | HU, DNA-binding transcriptional regulator, beta subunit (NCBI) | low | > 76 |
| Escherichia coli ECRC101 | 1.00 | MCAODC_22960 | yceD | 23S rRNA accumulation protein YceD | 0.99 | MCAODC_27540 | hupB | DNA-binding protein HU-beta | low | > 87 |
| Escherichia coli ECRC62 | 1.00 | BNILDI_19290 | yceD | 23S rRNA accumulation protein YceD | 0.99 | BNILDI_22665 | hupB | DNA-binding protein HU-beta | low | > 75 |
| Escherichia coli ECRC102 | 1.00 | NIAGMN_24230 | yceD | 23S rRNA accumulation protein YceD | 0.99 | NIAGMN_06370 | hupB | DNA-binding protein HU-beta | — | — |
| Escherichia coli ECRC99 | 1.00 | KEDOAH_24155 | yceD | 23S rRNA accumulation protein YceD | 0.99 | KEDOAH_19650 | hupB | DNA-binding protein HU-beta | — | — |
| Escherichia coli ECRC98 | 1.00 | JDDGAC_07260 | yceD | 23S rRNA accumulation protein YceD | 0.99 | JDDGAC_11970 | hupB | DNA-binding protein HU-beta | low | > 86 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.99 | OHPLBJKB_02578 | | Large ribosomal RNA subunit accumulation protein YceD | 1.00 | OHPLBJKB_03233 | | DNA-binding protein HU-beta | low | > 73 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.97 | GFF3370 | | COG1399 protein, clustered with ribosomal protein L32p | 0.98 | GFF4356 | | DNA-binding protein HU-beta | low | > 78 |
| Enterobacter sp. TBS_079 | 0.94 | MPMX20_01768 | | Large ribosomal RNA subunit accumulation protein YceD | 0.96 | MPMX20_01031 | | DNA-binding protein HU-beta | low | > 85 |
| Enterobacter asburiae PDN3 | 0.94 | EX28DRAFT_1841 | | Predicted metal-binding, possibly nucleic acid-binding protein | 0.96 | EX28DRAFT_2530 | | Bacterial nucleoid DNA-binding protein | low | > 76 |
| Klebsiella michiganensis M5al | 0.87 | BWI76_RS11065 | | hypothetical protein | 0.96 | BWI76_RS06540 | | DNA-binding protein HU-beta | — | — |
| Rahnella sp. WP5 | 0.85 | EX31_RS24410 | | 23S rRNA accumulation protein YceD | 0.90 | EX31_RS22260 | | DNA-binding protein HU-beta | low | > 89 |
| Pectobacterium carotovorum WPP14 | 0.84 | HER17_RS08625 | | 23S rRNA accumulation protein YceD | 0.91 | HER17_RS15835 | | DNA-binding protein HU-beta | low | > 75 |
| Erwinia tracheiphila SCR3 | 0.84 | LU632_RS14845 | yceD | 23S rRNA accumulation protein YceD | 0.86 | LU632_RS18330 | hupB | DNA-binding protein HU-beta | low | > 74 |
| Dickeya dadantii 3937 | 0.84 | DDA3937_RS13145 | | 23S rRNA accumulation protein YceD | 0.90 | DDA3937_RS05655 | | DNA-binding protein HU-beta | low | > 74 |
| Dickeya dianthicola ME23 | 0.83 | DZA65_RS13680 | | 23S rRNA accumulation protein YceD | 0.90 | DZA65_RS06025 | | DNA-binding protein HU-beta | — | — |
| Dickeya dianthicola 67-19 | 0.82 | HGI48_RS13210 | | 23S rRNA accumulation protein YceD | 0.90 | HGI48_RS05700 | | DNA-binding protein HU-beta | low | > 71 |
| Pantoea sp. MT58 | 0.79 | IAI47_12095 | | 23S rRNA accumulation protein YceD | 0.86 | IAI47_14640 | | DNA-binding protein HU-beta | — | — |
| Serratia liquefaciens MT49 | 0.73 | IAI46_09765 | | 23S rRNA accumulation protein YceD | 0.95 | IAI46_05025 | | DNA-binding protein HU-beta | — | — |
| Vibrio cholerae E7946 ATCC 55056 | 0.50 | CSW01_10120 | | 23S rRNA accumulation protein YceD | 0.78 | CSW01_09600 | | DNA-binding protein HU-beta | — | — |
| Alteromonas macleodii MIT1002 | 0.46 | MIT1002_01728 | | hypothetical protein | 0.83 | MIT1002_02756 | | hypothetical protein | — | — |
| Shewanella loihica PV-4 | 0.44 | Shew_1598 | | hypothetical protein (RefSeq) | 0.82 | Shew_2505 | | histone family protein DNA-binding protein (RefSeq) | — | — |
| Shewanella oneidensis MR-1 | 0.44 | SO2781 | | conserved hypothetical protein (NCBI ptt file) | 0.85 | SO1797 | | DNA-binding protein, HU family (NCBI ptt file) | — | — |
| Shewanella amazonensis SB2B | 0.44 | Sama_1985 | | hypothetical protein (RefSeq) | 0.82 | Sama_1227 | | HU family DNA-binding protein (RefSeq) | — | — |
| Shewanella sp. ANA-3 | 0.44 | Shewana3_2563 | | hypothetical protein (RefSeq) | 0.85 | Shewana3_2658 | | histone family protein DNA-binding protein (RefSeq) | — | — |
| Pseudomonas stutzeri RCH2 | 0.27 | Psest_1684 | | Predicted metal-binding, possibly nucleic acid-binding protein | 0.82 | Psest_2284 | | Bacterial nucleoid DNA-binding protein | — | — |
| Marinobacter adhaerens HP15 | 0.25 | HP15_2217 | | protein containing DUF177 | 0.78 | HP15_2182 | | histone-like bacterial DNA-binding protein | — | — |
| Lysobacter sp. OAE881 | 0.21 | ABIE51_RS13965 | | YceD family protein | 0.63 | ABIE51_RS14140 | | HU family DNA-binding protein | — | — |
| Pseudomonas putida KT2440 | 0.19 | PP_1910 | | conserved protein of unknown function | 0.80 | PP_2303 | | DNA binding regulator, beta subunit B | — | — |
| Pseudomonas fluorescens SBW25 | 0.18 | PFLU_RS23075 | | hypothetical protein | 0.76 | PFLU_RS19155 | | HU family DNA-binding protein | — | — |
| Dyella japonica UNC79MFTsu3.2 | 0.18 | ABZR86_RS06190 | | YceD family protein | 0.66 | ABZR86_RS07315 | | HU family DNA-binding protein | — | — |
| Pseudomonas fluorescens SBW25-INTG | 0.18 | PFLU_RS23075 | | hypothetical protein | 0.76 | PFLU_RS19155 | | HU family DNA-binding protein | — | — |
| Pseudomonas simiae WCS417 | 0.17 | PS417_21460 | | metal-binding protein | 0.76 | PS417_17220 | | transcriptional regulator HU subunit alpha | — | — |
| Kangiella aquimarina DSM 16071 | 0.17 | B158DRAFT_1758 | | Predicted metal-binding, possibly nucleic acid-binding protein | 0.80 | B158DRAFT_1039 | | Bacterial nucleoid DNA-binding protein | low | > 40 |
| Pseudomonas fluorescens FW300-N1B4 | 0.17 | Pf1N1B4_455 | | COG1399 protein, clustered with ribosomal protein L32p | 0.73 | Pf1N1B4_3948 | | DNA-binding protein HU-beta | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.17 | AO353_01385 | | metal-binding protein | 0.73 | AO353_20190 | | DNA-binding protein HU | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.17 | PfGW456L13_2101 | | COG1399 protein, clustered with ribosomal protein L32p | 0.73 | PfGW456L13_2555 | | DNA-binding protein HU-beta | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.16 | AO356_20145 | | metal-binding protein | 0.73 | AO356_01735 | | DNA-binding protein HU | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.16 | Pf6N2E2_5948 | | COG1399 protein, clustered with ribosomal protein L32p | 0.73 | Pf6N2E2_2215 | | DNA-binding protein HU-beta | — | — |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.16 | Psyr_1643 | | Protein of unknown function DUF177 | 0.75 | Psyr_1750 | | bacterial nucleoid protein HU beta subunit | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.16 | Psyr_1643 | | Protein of unknown function DUF177 | 0.75 | Psyr_1750 | | bacterial nucleoid protein HU beta subunit | — | — |
| Dechlorosoma suillum PS | 0.16 | Dsui_2443 | | putative metal-binding protein, possibly nucleic-acid binding protein | 0.73 | Dsui_2199 | | bacterial nucleoid DNA-binding protein | low | > 51 |
| Rhodanobacter sp. FW510-T8 | 0.15 | OKGIIK_05695 | | Large ribosomal RNA subunit accumulation protein YceD | 0.66 | OKGIIK_08025 | himA | integration host factor subunit alpha | — | — |
| Herbaspirillum seropedicae SmR1 | 0.15 | HSERO_RS09580 | | DNA-binding protein | 0.67 | HSERO_RS12900 | | transcriptional regulator HU subunit alpha | — | — |
Not shown: 2 genomes with orthologs for ECD_01084 only; 38 genomes with orthologs for ECD_00392 only