Conservation of cofitness between CSW01_01005 and CSW01_19440 in Vibrio cholerae E7946 ATCC 55056

54 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_01005 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 1.0 CSW01_19440 sodium/proline symporter PutP 0.48 9
Escherichia coli HS(pFamp)R (ATCC 700891) 0.65 OHPLBJKB_00204 Ribosomal RNA large subunit methyltransferase J 0.45 OHPLBJKB_02651 Sodium/proline symporter low > 73
Escherichia coli BW25113 0.65 b3499 yhiR predicted DNA (exogenous) processing protein (NCBI) 0.44 b1015 putP proline:sodium symporter (NCBI) low > 76
Dickeya dadantii 3937 0.65 DDA3937_RS21255 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.46 DDA3937_RS20120 sodium/proline symporter PutP low > 74
Escherichia coli ECOR27 0.65 NOLOHH_08345 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase 0.44 NOLOHH_21495 putP sodium/proline symporter PutP low > 75
Escherichia coli ECRC101 0.65 MCAODC_06925 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase 0.44 MCAODC_23980 putP sodium/proline symporter PutP low > 87
Dickeya dianthicola 67-19 0.65 HGI48_RS00055 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.47 HGI48_RS20260 sodium/proline symporter PutP low > 71
Escherichia coli ECRC100 0.65 OKFHMN_16410 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase 0.44 OKFHMN_04595 putP sodium/proline symporter PutP low > 80
Escherichia coli BL21 0.65 ECD_03348 23S rRNA m(6)A2030 methyltransferase, SAM-dependent 0.44 ECD_01018 proline:sodium symporter low > 61
Escherichia fergusonii Becca 0.65 EFB2_00316 Ribosomal RNA large subunit methyltransferase J 0.44 EFB2_03065 Sodium/proline symporter low > 86
Escherichia coli ECRC102 0.65 NIAGMN_14175 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase 0.44 NIAGMN_23740 putP sodium/proline symporter PutP — —
Escherichia coli ECRC99 0.65 KEDOAH_11735 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase 0.44 KEDOAH_23150 putP sodium/proline symporter PutP — —
Escherichia coli ECRC98 0.65 JDDGAC_20040 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase 0.44 JDDGAC_08205 putP sodium/proline symporter PutP low > 86
Escherichia coli ECRC62 0.65 BNILDI_03215 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase 0.44 BNILDI_19660 putP sodium/proline symporter PutP low > 75
Escherichia coli Nissle 1917 0.65 ECOLIN_RS19990 23S rRNA (adenine(2030)-N(6))-methyltransferase 0.44 ECOLIN_RS05300 sodium/proline symporter PutP 0.28 51
Rahnella sp. WP5 0.65 EX31_RS05170 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.45 EX31_RS09415 sodium/proline symporter PutP low > 89
Enterobacter asburiae PDN3 0.65 EX28DRAFT_4062 Protein involved in catabolism of external DNA 0.45 EX28DRAFT_1910 sodium/proline symporter low > 76
Dickeya dianthicola ME23 0.65 DZA65_RS00045 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.47 DZA65_RS21305 sodium/proline symporter PutP low > 75
Escherichia coli ECOR38 0.65 HEPCGN_15320 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase 0.44 HEPCGN_23540 putP sodium/proline symporter PutP low > 87
Enterobacter sp. TBS_079 0.64 MPMX20_04398 Ribosomal RNA large subunit methyltransferase J 0.45 MPMX20_01703 Sodium/proline symporter low > 85
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.64 GFF515 Protein involved in catabolism of external DNA 0.45 GFF3303 Proline/sodium symporter PutP (TC 2.A.21.2.1) @ Propionate/sodium symporter low > 78
Klebsiella michiganensis M5al 0.64 BWI76_RS26680 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.46 BWI76_RS10800 sodium:proline symporter low > 92
Serratia liquefaciens MT49 0.63 IAI46_24235 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.44 IAI46_15740 sodium/proline symporter PutP low > 86
Pectobacterium carotovorum WPP14 0.62 HER17_RS21245 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.45 HER17_RS01105 sodium/proline symporter PutP low > 75
Erwinia tracheiphila SCR3 0.62 LU632_RS19485 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.45 LU632_RS13735 putP sodium/proline symporter PutP low > 74
Pantoea sp. MT58 0.61 IAI47_01340 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.47 IAI47_08205 sodium/proline symporter PutP low > 76
Shewanella amazonensis SB2B 0.51 Sama_3563 hypothetical protein (RefSeq) 0.48 Sama_2177 sodium/proline symporter (RefSeq) low > 62
Shewanella sp. ANA-3 0.49 Shewana3_4038 hypothetical protein (RefSeq) 0.46 Shewana3_1451 sodium/proline symporter (RefSeq) low > 73
Shewanella loihica PV-4 0.48 Shew_3648 hypothetical protein (RefSeq) 0.48 Shew_2435 sodium/proline symporter (RefSeq) low > 60
Pseudomonas putida KT2440 0.44 PP_4945 23S rRNA m(6)A2030 methyltransferase 0.45 PP_4946 sodium/L-proline transporter 0.28 1
Pseudomonas stutzeri RCH2 0.42 Psest_0408 Protein involved in catabolism of external DNA 0.46 Psest_3075 sodium/proline symporter low > 67
Herbaspirillum seropedicae SmR1 0.41 HSERO_RS10595 competence protein ComJ 0.08 HSERO_RS00960 sodium:solute symporter low > 78
Ralstonia solanacearum UW163 0.41 UW163_RS04530 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.09 UW163_RS02120 sodium:solute symporter — —
Ralstonia solanacearum IBSBF1503 0.41 RALBFv3_RS09065 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.09 RALBFv3_RS11465 sodium:solute symporter low > 76
Paraburkholderia graminis OAS925 0.41 ABIE53_001640 23S rRNA (adenine2030-N6)-methyltransferase 0.07 ABIE53_005954 SSS family solute:Na+ symporter low > 113
Ralstonia solanacearum PSI07 0.41 RPSI07_RS08205 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.09 RPSI07_RS21745 sodium:solute symporter low > 81
Ralstonia solanacearum GMI1000 0.40 RS_RS16875 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.09 RS_RS02295 sodium:solute symporter low > 80
Pseudomonas sp. S08-1 0.40 OH686_09780 23S rRNA (adenine(2030)-N(6))-methyltransferase 0.46 OH686_03775 sodium/proline symporter low > 80
Pseudomonas sp. RS175 0.39 PFR28_05056 Ribosomal RNA large subunit methyltransferase J 0.42 PFR28_05054 Sodium/proline symporter low > 88
Pseudomonas fluorescens FW300-N1B4 0.38 Pf1N1B4_1481 Protein involved in catabolism of external DNA 0.44 Pf1N1B4_1487 Proline/sodium symporter PutP (TC 2.A.21.2.1) @ Propionate/sodium symporter low > 87
Pseudomonas syringae pv. syringae B728a 0.38 Psyr_4772 Protein of unknown function DUF519 0.43 Psyr_0507 Na+/solute symporter low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.38 Psyr_4772 Protein of unknown function DUF519 0.43 Psyr_0507 Na+/solute symporter low > 86
Pseudomonas fluorescens FW300-N2E2 0.38 Pf6N2E2_3679 Protein involved in catabolism of external DNA 0.42 Pf6N2E2_3684 Proline/sodium symporter PutP (TC 2.A.21.2.1) @ Propionate/sodium symporter low > 103
Pseudomonas fluorescens SBW25-INTG 0.38 PFLU_RS02255 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.44 PFLU_RS02235 sodium/proline symporter PutP low > 109
Pseudomonas fluorescens SBW25 0.38 PFLU_RS02255 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.44 PFLU_RS02235 sodium/proline symporter PutP low > 109
Pseudomonas fluorescens GW456-L13 0.38 PfGW456L13_219 Protein involved in catabolism of external DNA 0.44 PfGW456L13_221 Proline/sodium symporter PutP (TC 2.A.21.2.1) @ Propionate/sodium symporter low > 87
Pseudomonas fluorescens FW300-N2C3 0.38 AO356_08990 lactate dehydrogenase 0.42 AO356_09010 proline:sodium symporter PutP low > 104
Pseudomonas simiae WCS417 0.38 PS417_02200 lactate dehydrogenase 0.44 PS417_02180 proline:sodium symporter PutP — —
Pseudomonas fluorescens FW300-N2E3 0.38 AO353_12840 lactate dehydrogenase 0.43 AO353_12815 proline:sodium symporter PutP low > 101
Alteromonas macleodii MIT1002 0.36 MIT1002_02015 Ribosomal RNA large subunit methyltransferase J 0.44 MIT1002_01275 Proline permease low > 70
Acinetobacter radioresistens SK82 0.34 MPMX26_02660 Ribosomal RNA large subunit methyltransferase J 0.44 MPMX26_01468 Sodium/proline symporter low > 36
Variovorax sp. OAS795 0.32 ABID97_RS25005 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.10 ABID97_RS07275 sodium:solute symporter family protein low > 91
Marinobacter adhaerens HP15 0.31 HP15_2563 protein containing DUF519 0.39 HP15_2205 sodium/solute symporter low > 73
Variovorax sp. SCN45 0.31 GFF2057 23S rRNA (adenine(2030)-N(6))-methyltransferase (EC 2.1.1.266) 0.11 GFF2546 sodium-solute symporter, putative low > 127
Acidovorax sp. GW101-3H11 0.31 Ac3H11_3047 Protein involved in catabolism of external DNA 0.09 Ac3H11_4798 sodium-solute symporter, putative low > 79

Not shown: 26 genomes with orthologs for CSW01_01005 only; 11 genomes with orthologs for CSW01_19440 only