Conservation of cofitness between CSW01_08115 and CSW01_13810 in Vibrio cholerae E7946 ATCC 55056

58 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_08115 ribosomal RNA large subunit methyltransferase F 1.0 CSW01_13810 phosphoenolpyruvate carboxykinase (ATP) 0.58 19
Shewanella loihica PV-4 0.48 Shew_3741 putative SAM-dependent methyltransferase (RefSeq) 0.37 Shew_3623 phosphoenolpyruvate carboxykinase (RefSeq) low > 60
Pseudomonas sp. S08-1 0.46 OH686_17875 23S rRNA (adenine(1618)-N(6))-methyltransferase 0.32 OH686_11060 phosphoenolpyruvate carboxykinase (ATP) low > 80
Pseudomonas segetis P6 0.46 ACVTMO_RS17435 rlmF 23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF 0.32 ACVTMO_RS03850 phosphoenolpyruvate carboxykinase low > 75
Pontibacter actiniarum KMM 6156, DSM 19842 0.46 CA264_17175 23S rRNA (adenine(1618)-N(6))-methyltransferase 0.44 CA264_05270 phosphoenolpyruvate carboxykinase (ATP) — —
Pseudomonas stutzeri RCH2 0.45 Psest_1227 Predicted SAM-dependent methyltransferase 0.33 Psest_3988 phosphoenolpyruvate carboxykinase (ATP) low > 67
Pseudomonas fluorescens FW300-N2C3 0.45 AO356_17450 23S rRNA methyltransferase 0.32 AO356_10140 phosphoenolpyruvate carboxykinase [ATP] 0.30 6
Pseudomonas aeruginosa PUPa3 0.45 DQ20_RS48955 rlmF;go_function=rRNA 23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF 0.34 DQ20_RS50285 phosphoenolpyruvate carboxykinase low > 101
Pseudomonas aeruginosa PA14 0.45 IKLFDK_19780 23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF 0.34 IKLFDK_27515 phosphoenolpyruvate carboxykinase low > 98
Pseudomonas aeruginosa MRSN321 0.45 DY961_RS13675 rlmF;go_function=rRNA 23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF 0.34 DY961_RS11825 phosphoenolpyruvate carboxykinase — —
Pedobacter sp. GW460-11-11-14-LB5 0.44 CA265_RS15555 23S rRNA (adenine(1618)-N(6))-methyltransferase 0.41 CA265_RS23490 phosphoenolpyruvate carboxykinase (ATP) low > 88
Pseudomonas fluorescens FW300-N2E2 0.44 Pf6N2E2_5416 Ribosomal RNA large subunit methyltransferase F (EC 2.1.1.51) 0.32 Pf6N2E2_3899 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) low > 103
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.44 GFF702 Ribosomal RNA large subunit methyltransferase F (EC 2.1.1.51) 0.81 GFF615 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) low > 78
Pseudomonas sp. DMC3 0.44 GFF1948 Ribosomal RNA large subunit methyltransferase F 0.33 GFF4175 Phosphoenolpyruvate carboxykinase (ATP) low > 89
Shewanella sp. ANA-3 0.44 Shewana3_0127 putative SAM-dependent methyltransferase (RefSeq) 0.36 Shewana3_0147 phosphoenolpyruvate carboxykinase (RefSeq) low > 73
Pseudomonas fluorescens FW300-N1B4 0.44 Pf1N1B4_903 Ribosomal RNA large subunit methyltransferase F (EC 2.1.1.51) 0.34 Pf1N1B4_1779 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) — —
Pectobacterium carotovorum WPP14 0.44 HER17_RS17915 23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF 0.80 HER17_RS01710 phosphoenolpyruvate carboxykinase (ATP) low > 75
Serratia liquefaciens MT49 0.43 IAI46_07510 23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF 0.81 IAI46_23770 phosphoenolpyruvate carboxykinase (ATP) low > 87
Pseudomonas sp. BP01 0.43 JOY50_RS11245 rlmF 23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF 0.33 JOY50_RS18315 phosphoenolpyruvate carboxykinase low > 84
Pseudomonas fluorescens FW300-N2E3 0.43 AO353_04555 23S rRNA methyltransferase 0.33 AO353_11775 phosphoenolpyruvate carboxykinase [ATP] low > 101
Enterobacter asburiae PDN3 0.43 EX28DRAFT_2183 Predicted SAM-dependent methyltransferase 0.79 EX28DRAFT_4140 phosphoenolpyruvate carboxykinase (ATP) low > 76
Pseudomonas sp. RS175 0.43 PFR28_03532 Ribosomal RNA large subunit methyltransferase F 0.34 PFR28_04874 Phosphoenolpyruvate carboxykinase (ATP) low > 88
Escherichia coli ECOR27 0.43 NOLOHH_22580 rlmF 23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF 0.81 NOLOHH_08835 pckA phosphoenolpyruvate carboxykinase (ATP) low > 76
Escherichia coli BW25113 0.43 b0807 ybiN orf, hypothetical protein (VIMSS) 0.81 b3403 pck phosphoenolpyruvate carboxykinase (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.43 OHPLBJKB_02906 Ribosomal RNA large subunit methyltransferase F 0.81 OHPLBJKB_00300 Phosphoenolpyruvate carboxykinase (ATP) low > 74
Escherichia coli ECRC62 0.43 BNILDI_20860 rlmF 23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF 0.81 BNILDI_02685 pckA phosphoenolpyruvate carboxykinase (ATP) low > 75
Escherichia coli BL21 0.43 ECD_00774 23S rRNA m(6)A1618 methyltransferase, SAM-dependent 0.81 ECD_03255 phosphoenolpyruvate carboxykinase [ATP] low > 61
Escherichia coli ECOR38 0.43 HEPCGN_01810 rlmF 23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF 0.81 HEPCGN_15865 pckA phosphoenolpyruvate carboxykinase (ATP) low > 88
Escherichia coli Nissle 1917 0.43 ECOLIN_RS04295 23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF 0.81 ECOLIN_RS19435 phosphoenolpyruvate carboxykinase (ATP) low > 55
Enterobacter sp. TBS_079 0.43 MPMX20_01436 Ribosomal RNA large subunit methyltransferase F 0.79 MPMX20_04290 Phosphoenolpyruvate carboxykinase (ATP) low > 85
Escherichia fergusonii Becca 0.43 EFB2_03298 Ribosomal RNA large subunit methyltransferase F 0.81 EFB2_00425 Phosphoenolpyruvate carboxykinase (ATP) low > 86
Escherichia coli ECRC98 0.43 JDDGAC_09865 rlmF 23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF 0.81 JDDGAC_20675 pckA phosphoenolpyruvate carboxykinase (ATP) low > 87
Escherichia coli ECRC99 0.43 KEDOAH_21680 rlmF 23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF 0.81 KEDOAH_11095 pckA phosphoenolpyruvate carboxykinase (ATP) — —
Pseudomonas fluorescens GW456-L13 0.43 PfGW456L13_1710 Ribosomal RNA large subunit methyltransferase F (EC 2.1.1.51) 0.33 PfGW456L13_420 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) low > 87
Escherichia coli ECRC100 0.42 OKFHMN_06230 rlmF 23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF 0.81 OKFHMN_17045 pckA phosphoenolpyruvate carboxykinase (ATP) low > 79
Escherichia coli ECRC102 0.42 NIAGMN_04275 rlmF 23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF 0.81 NIAGMN_14815 pckA phosphoenolpyruvate carboxykinase (ATP) low > 80
Escherichia coli ECRC101 0.42 MCAODC_25445 rlmF 23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF 0.81 MCAODC_07575 pckA phosphoenolpyruvate carboxykinase (ATP) low > 87
Pseudomonas syringae pv. syringae B728a ΔmexB 0.42 Psyr_1085 23S rRNA m(6)A-1618 methyltransferase 0.33 Psyr_0168 Phosphoenolpyruvate carboxykinase (ATP) low > 86
Pseudomonas syringae pv. syringae B728a 0.42 Psyr_1085 23S rRNA m(6)A-1618 methyltransferase 0.33 Psyr_0168 Phosphoenolpyruvate carboxykinase (ATP) low > 86
Klebsiella pneumoniae MKP103 0.42 KDGMDA_17215 23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF 0.81 KDGMDA_06970 phosphoenolpyruvate carboxykinase (ATP) low > 95
Pseudomonas lactucae CFBP13502 0.42 GEMAOFIL_01235 Ribosomal RNA large subunit methyltransferase F 0.35 GEMAOFIL_00469 Phosphoenolpyruvate carboxykinase (ATP) low > 96
Pseudomonas simiae WCS417 0.42 PS417_05145 23S rRNA methyltransferase 0.34 PS417_01210 hypothetical protein low > 88
Bacteroides ovatus ATCC 8483 0.42 BACOVA_05545 hypothetical protein 0.72 BACOVA_02011 phosphoenolpyruvate carboxykinase (ATP) — —
Pseudomonas orientalis W4I3 0.42 QF045_RS08135 23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF 0.35 QF045_RS04340 phosphoenolpyruvate carboxykinase low > 93
Pseudomonas sp. SVBP6 0.42 COO64_RS04395 rlmF 23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF 0.33 COO64_RS00660 phosphoenolpyruvate carboxykinase low > 93
Pseudomonas fluorescens SBW25 0.42 PFLU_RS05215 23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF 0.34 PFLU_RS01320 phosphoenolpyruvate carboxykinase low > 109
Pseudomonas fluorescens SBW25-INTG 0.42 PFLU_RS05215 23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF 0.34 PFLU_RS01320 phosphoenolpyruvate carboxykinase low > 109
Erwinia tracheiphila SCR3 0.41 LU632_RS09435 rlmF 23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF 0.78 LU632_RS22930 pckA phosphoenolpyruvate carboxykinase (ATP) low > 73
Erwinia amylovora T8 0.41 OLJFJH_16480 23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF 0.78 OLJFJH_04150 phosphoenolpyruvate carboxykinase (ATP) low > 58
Shewanella oneidensis MR-1 0.41 SO_0134 putative SAM-dependent methyltransferase (RefSeq) 0.36 SO0162 pckA phosphoenolpyruvate carboxykinase (ATP) (NCBI ptt file) low > 76
Erwinia tracheiphila HP pepo 2.2 0.41 IJEDHG_19895 rlmF 23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF 0.78 IJEDHG_11970 pckA phosphoenolpyruvate carboxykinase (ATP) low > 61
Bacteroides thetaiotaomicron VPI-5482 0.41 BT4691 conserved hypothetical protein (NCBI ptt file) 0.73 BT2790 phosphoenolpyruvate carboxykinase [ATP] (NCBI ptt file) — —
Klebsiella michiganensis M5al 0.41 BWI76_RS08955 23S rRNA (adenine(1618)-N(6))-methyltransferase 0.79 BWI76_RS26155 phosphoenolpyruvate carboxykinase (ATP) low > 92
Rahnella sp. WP5 0.39 EX31_RS18995 23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF 0.79 EX31_RS04780 phosphoenolpyruvate carboxykinase (ATP) low > 89
Pantoea agglomerans CFBP13505 P0401 0.39 PagCFBP13505_RS04105 23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF 0.77 PagCFBP13505_RS18350 phosphoenolpyruvate carboxykinase (ATP) low > 74
Alteromonas macleodii MIT1002 0.39 MIT1002_02912 Ribosomal RNA large subunit methyltransferase F 0.36 MIT1002_03972 Phosphoenolpyruvate carboxykinase [ATP] low > 70
Pantoea sp. MT58 0.38 IAI47_13215 23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF 0.77 IAI47_01830 phosphoenolpyruvate carboxykinase (ATP) low > 76
Shewanella amazonensis SB2B 0.37 Sama_3621 putative SAM-dependent methyltransferase (RefSeq) 0.38 Sama_0165 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) (from data) low > 62
Cellulophaga baltica 18 0.36 M666_RS16915 23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF 0.43 M666_RS03005 phosphoenolpyruvate carboxykinase (ATP) low > 67

Not shown: 4 genomes with orthologs for CSW01_08115 only; 21 genomes with orthologs for CSW01_13810 only