Conservation of cofitness between CSW01_01045 and CSW01_13620 in Vibrio cholerae E7946 ATCC 55056

66 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_01045 DNA helicase RecQ 1.0 CSW01_13620 aspartate ammonia-lyase 0.61 16
Klebsiella pneumoniae MKP103 0.67 KDGMDA_09735 ATP-dependent DNA helicase RecQ 0.75 KDGMDA_10820 aspartate ammonia-lyase low > 95
Escherichia coli ECRC102 0.67 NIAGMN_12115 recQ ATP-dependent DNA helicase RecQ 0.75 NIAGMN_10275 aspA aspartate ammonia-lyase low > 80
Escherichia coli ECRC100 0.67 OKFHMN_14360 recQ ATP-dependent DNA helicase RecQ 0.75 OKFHMN_12430 aspA aspartate ammonia-lyase low > 79
Escherichia coli ECRC62 0.67 BNILDI_05040 recQ ATP-dependent DNA helicase RecQ 0.75 BNILDI_06795 aspA aspartate ammonia-lyase low > 75
Escherichia coli ECRC99 0.67 KEDOAH_13790 recQ ATP-dependent DNA helicase RecQ 0.75 KEDOAH_15735 aspA aspartate ammonia-lyase — —
Escherichia coli ECOR38 0.67 HEPCGN_13060 recQ ATP-dependent DNA helicase RecQ 0.75 HEPCGN_10655 aspA aspartate ammonia-lyase low > 88
Escherichia coli ECOR27 0.67 NOLOHH_06490 recQ ATP-dependent DNA helicase RecQ 0.75 NOLOHH_04695 aspA aspartate ammonia-lyase low > 76
Escherichia coli ECRC98 0.67 JDDGAC_17985 recQ ATP-dependent DNA helicase RecQ 0.75 JDDGAC_16065 aspA aspartate ammonia-lyase low > 87
Escherichia coli ECRC101 0.67 MCAODC_04865 recQ ATP-dependent DNA helicase RecQ 0.75 MCAODC_02940 aspA aspartate ammonia-lyase low > 87
Escherichia coli Nissle 1917 0.67 ECOLIN_RS21935 ATP-dependent DNA helicase RecQ 0.75 ECOLIN_RS24045 aspartate ammonia-lyase low > 55
Escherichia coli BW25113 0.67 b3822 recQ ATP-dependent DNA helicase (NCBI) 0.75 b4139 aspA aspartate ammonia-lyase (aspartase) (VIMSS) low > 76
Pantoea sp. MT58 0.67 IAI47_18360 ATP-dependent DNA helicase RecQ 0.74 IAI47_17320 aspartate ammonia-lyase low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.67 OHPLBJKB_04229 ATP-dependent DNA helicase RecQ 0.75 OHPLBJKB_03904 Aspartate ammonia-lyase low > 74
Escherichia fergusonii Becca 0.67 EFB2_04815 ATP-dependent DNA helicase RecQ 0.75 EFB2_04396 Aspartate ammonia-lyase low > 86
Escherichia coli BL21 0.66 ECD_03701 ATP-dependent DNA helicase 0.75 ECD_04009 aspartate ammonia-lyase low > 61
Klebsiella michiganensis M5al 0.66 BWI76_RS01245 DNA helicase RecQ 0.74 BWI76_RS02330 aspartate ammonia-lyase low > 92
Dickeya dianthicola 67-19 0.66 HGI48_RS20005 ATP-dependent DNA helicase RecQ 0.73 HGI48_RS02695 aspartate ammonia-lyase low > 71
Serratia liquefaciens MT49 0.66 IAI46_00770 ATP-dependent DNA helicase RecQ 0.75 IAI46_01480 aspartate ammonia-lyase low > 87
Pantoea agglomerans CFBP13505 P0401 0.66 PagCFBP13505_RS15340 ATP-dependent DNA helicase RecQ 0.74 PagCFBP13505_RS09490 aspartate ammonia-lyase low > 74
Erwinia amylovora T8 0.66 OLJFJH_06445 ATP-dependent DNA helicase RecQ 0.75 OLJFJH_02615 aspartate ammonia-lyase low > 58
Dickeya dianthicola ME23 0.66 DZA65_RS21045 ATP-dependent DNA helicase RecQ 0.73 DZA65_RS02850 aspartate ammonia-lyase low > 75
Dickeya dadantii 3937 0.66 DDA3937_RS19850 ATP-dependent DNA helicase RecQ 0.73 DDA3937_RS02720 aspartate ammonia-lyase low > 74
Enterobacter asburiae PDN3 0.66 EX28DRAFT_4487 ATP-dependent DNA helicase RecQ 0.75 EX28DRAFT_3336 aspartate ammonia-lyase low > 76
Enterobacter sp. TBS_079 0.66 MPMX20_04458 ATP-dependent DNA helicase RecQ 0.75 MPMX20_00419 Aspartate ammonia-lyase low > 85
Rahnella sp. WP5 0.65 EX31_RS15210 ATP-dependent DNA helicase RecQ 0.77 EX31_RS08965 aspartate ammonia-lyase low > 89
Pectobacterium carotovorum WPP14 0.65 HER17_RS01395 ATP-dependent DNA helicase RecQ 0.75 HER17_RS19355 aspartate ammonia-lyase low > 75
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.65 GFF248 ATP-dependent DNA helicase RecQ 0.75 GFF2013 Aspartate ammonia-lyase (EC 4.3.1.1) low > 78
Shewanella amazonensis SB2B 0.57 Sama_0333 ATP-dependent DNA helicase RecQ (RefSeq) 0.45 Sama_0789 aspartate ammonia-lyase (RefSeq) low > 62
Pseudomonas sp. SVBP6 0.46 COO64_RS21845 recQ DNA helicase RecQ 0.51 COO64_RS01760 aspA aspartate ammonia-lyase low > 93
Pseudomonas aeruginosa MRSN321 0.45 DY961_RS00140 recQ;go_function=DNA DNA helicase RecQ 0.52 DY961_RS25420 aspA;go_function=aspartate aspartate ammonia-lyase low > 100
Pseudomonas aeruginosa PA14 0.45 IKLFDK_17145 DNA helicase RecQ 0.52 IKLFDK_26280 aspartate ammonia-lyase low > 98
Pseudomonas aeruginosa PUPa3 0.45 DQ20_RS40870 recQ;go_function=DNA DNA helicase RecQ 0.52 DQ20_RS57875 aspA;go_function=aspartate aspartate ammonia-lyase low > 101
Pseudomonas fluorescens GW456-L13 0.45 PfGW456L13_4423 ATP-dependent DNA helicase RecQ 0.51 PfGW456L13_742 Aspartate ammonia-lyase (EC 4.3.1.1) low > 87
Pseudomonas sp. RS175 0.45 PFR28_00788 ATP-dependent DNA helicase RecQ 0.51 PFR28_04498 Aspartate ammonia-lyase low > 88
Pseudomonas fluorescens FW300-N2C3 0.45 AO356_04050 ATP-dependent DNA helicase RecQ 0.51 AO356_11090 aspartate ammonia-lyase low > 104
Pseudomonas segetis P6 0.45 MPMX49_02936 ATP-dependent DNA helicase RecQ 0.51 MPMX49_00161 Aspartate ammonia-lyase low > 75
Pseudomonas sp. S08-1 0.45 OH686_20670 ATP-dependent DNA helicase RecQ 0.52 OH686_13315 Aspartate ammonia-lyase — —
Pseudomonas fluorescens FW300-N2E2 0.45 Pf6N2E2_2645 ATP-dependent DNA helicase RecQ 0.51 Pf6N2E2_4085 Aspartate ammonia-lyase (EC 4.3.1.1) — —
Pseudomonas fluorescens FW300-N1B4 0.45 Pf1N1B4_3533 ATP-dependent DNA helicase RecQ 0.51 Pf1N1B4_2025 Aspartate ammonia-lyase (EC 4.3.1.1) — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.45 CA264_07560 DNA helicase RecQ 0.55 CA264_18450 aspartate ammonia-lyase low > 74
Pseudomonas syringae pv. syringae B728a 0.44 Psyr_3738 ATP-dependent DNA helicase RecQ 0.51 Psyr_5051 Aspartate ammonia-lyase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.44 Psyr_3738 ATP-dependent DNA helicase RecQ 0.51 Psyr_5051 Aspartate ammonia-lyase low > 86
Pseudomonas sp. BP01 0.44 JOY50_RS01155 recQ DNA helicase RecQ 0.51 JOY50_RS08810 aspA aspartate ammonia-lyase low > 84
Pseudomonas sp. DMC3 0.44 GFF2380 ATP-dependent DNA helicase RecQ 0.51 GFF488 Aspartate ammonia-lyase low > 89
Pseudomonas fluorescens FW300-N2E3 0.44 AO353_18430 ATP-dependent DNA helicase RecQ 0.51 AO353_09950 aspartate ammonia-lyase low > 101
Pseudomonas putida KT2440 0.44 PP_4516 ATP-dependent DNA 3 0.51 PP_5338 aspartate ammonia-lyase low > 96
Pseudomonas fluorescens SBW25 0.44 PFLU_RS21920 DNA helicase RecQ 0.51 PFLU_RS29815 aspartate ammonia-lyase low > 109
Variovorax sp. OAS795 0.44 ABID97_RS03395 DNA helicase RecQ 0.50 ABID97_RS05930 aspartate ammonia-lyase 0.39 21
Pseudomonas simiae WCS417 0.44 PS417_19950 ATP-dependent DNA helicase RecQ 0.51 PS417_28130 aspartate ammonia-lyase — —
Pseudomonas fluorescens SBW25-INTG 0.44 PFLU_RS21920 DNA helicase RecQ 0.51 PFLU_RS29815 aspartate ammonia-lyase 0.36 13
Pseudomonas lactucae CFBP13502 0.44 GEMAOFIL_04187 ATP-dependent DNA helicase RecQ 0.51 GEMAOFIL_00092 Aspartate ammonia-lyase low > 96
Pseudomonas orientalis W4I3 0.44 QF045_RS22070 DNA helicase RecQ 0.51 QF045_RS02490 aspartate ammonia-lyase low > 93
Pseudomonas stutzeri RCH2 0.44 Psest_1869 ATP-dependent DNA helicase RecQ 0.50 Psest_4074 Aspartate ammonia-lyase — —
Agrobacterium fabrum C58 0.44 Atu0061 ATP-dependent DNA helicase 0.50 Atu3793 aspartate ammonia-lyase low > 89
Paraburkholderia sabiae LMG 24235 0.43 QEN71_RS28295 DNA helicase RecQ 0.51 QEN71_RS33820 aspartate ammonia-lyase low > 153
Cupriavidus basilensis FW507-4G11 0.42 RR42_RS19310 ATP-dependent DNA helicase RecQ 0.53 RR42_RS26135 aspartate ammonia-lyase low > 128
Dechlorosoma suillum PS 0.42 Dsui_3092 ATP-dependent DNA helicase RecQ 0.54 Dsui_3481 aspartate ammonia-lyase low > 51
Variovorax sp. SCN45 0.42 GFF6415 ATP-dependent DNA helicase RecQ 0.49 GFF4594 Aspartate ammonia-lyase (EC 4.3.1.1) low > 127
Phocaeicola vulgatus CL09T03C04 0.41 HMPREF1058_RS14585 DNA helicase RecQ 0.51 HMPREF1058_RS06295 aspartate ammonia-lyase low > 67
Azospirillum sp. SherDot2 0.41 MPMX19_00123 ATP-dependent DNA helicase RecQ 0.53 MPMX19_03594 Aspartate ammonia-lyase low > 112
Phocaeicola dorei CL03T12C01 0.41 ABI39_RS10235 DNA helicase RecQ 0.51 ABI39_RS20055 aspartate ammonia-lyase low > 72
Castellaniella sp019104865 MT123 0.40 ABCV34_RS07985 DNA helicase RecQ 0.44 ABCV34_RS07730 aspartate ammonia-lyase low > 48
Bacteroides stercoris CC31F 0.40 HMPREF1181_RS14110 DNA helicase RecQ 0.49 HMPREF1181_RS11250 aspartate ammonia-lyase low > 56
Bacteroides thetaiotaomicron VPI-5482 0.39 BT1848 ATP-dependent DNA helicase recQ (NCBI ptt file) 0.50 BT2755 aspartate ammonia-lyase (NCBI ptt file) low > 81
Bacteroides ovatus ATCC 8483 0.38 BACOVA_04594 ATP-dependent DNA helicase RecQ 0.51 BACOVA_01069 aspartate ammonia-lyase low > 96
Bifidobacterium breve UCC2003 0.32 BBR_RS13150 DNA helicase RecQ 0.44 BBR_RS12120 aspartate ammonia-lyase low > 34

Not shown: 47 genomes with orthologs for CSW01_01045 only; 4 genomes with orthologs for CSW01_13620 only