Conservation of cofitness between CSW01_03750 and CSW01_12595 in Vibrio cholerae E7946 ATCC 55056

56 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_03750 U32 family peptidase 1.0 CSW01_12595 2-isopropylmalate synthase 0.62 3
Rahnella sp. WP5 0.77 EX31_RS20325 tRNA 5-hydroxyuridine modification protein YegQ 0.71 EX31_RS03680 2-isopropylmalate synthase low > 89
Serratia liquefaciens MT49 0.76 IAI46_19015 tRNA 5-hydroxyuridine modification protein YegQ 0.74 IAI46_03355 2-isopropylmalate synthase low > 87
Klebsiella pneumoniae MKP103 0.76 KDGMDA_26330 tRNA 5-hydroxyuridine modification protein YegQ 0.69 KDGMDA_12910 2-isopropylmalate synthase low > 95
Klebsiella michiganensis M5al 0.76 BWI76_RS19280 U32 family peptidase 0.70 BWI76_RS04680 2-isopropylmalate synthase low > 92
Escherichia coli ECOR38 0.75 HEPCGN_02845 yegQ tRNA 5-hydroxyuridine modification protein YegQ 0.70 HEPCGN_08695 2-isopropylmalate synthase low > 88
Escherichia coli ECRC102 0.75 NIAGMN_22110 yegQ tRNA 5-hydroxyuridine modification protein YegQ 0.70 NIAGMN_08565 2-isopropylmalate synthase low > 80
Escherichia coli ECRC99 0.75 KEDOAH_03985 yegQ tRNA 5-hydroxyuridine modification protein YegQ 0.70 KEDOAH_17440 2-isopropylmalate synthase — —
Escherichia coli BW25113 0.75 b2081 yegQ predicted peptidase (NCBI) 0.70 b0074 leuA 2-isopropylmalate synthase (NCBI) low > 76
Escherichia coli ECRC62 0.75 BNILDI_14415 yegQ tRNA 5-hydroxyuridine modification protein YegQ 0.70 BNILDI_08550 2-isopropylmalate synthase low > 75
Escherichia coli ECRC100 0.75 OKFHMN_24165 yegQ tRNA 5-hydroxyuridine modification protein YegQ 0.70 OKFHMN_10715 2-isopropylmalate synthase low > 79
Escherichia coli ECRC101 0.75 MCAODC_20775 yegQ tRNA 5-hydroxyuridine modification protein YegQ 0.70 MCAODC_01230 2-isopropylmalate synthase low > 87
Escherichia coli BL21 0.75 ECD_01986 putative peptidase 0.70 ECD_00076 2-isopropylmalate synthase low > 61
Escherichia coli HS(pFamp)R (ATCC 700891) 0.75 OHPLBJKB_01623 putative protease YdcP 0.70 OHPLBJKB_03583 2-isopropylmalate synthase low > 74
Escherichia coli ECOR27 0.75 NOLOHH_15500 yegQ tRNA 5-hydroxyuridine modification protein YegQ 0.70 NOLOHH_03060 2-isopropylmalate synthase low > 76
Escherichia coli ECRC98 0.75 JDDGAC_28275 yegQ tRNA 5-hydroxyuridine modification protein YegQ 0.70 JDDGAC_14310 2-isopropylmalate synthase low > 87
Escherichia fergusonii Becca 0.75 EFB2_01770 23S rRNA 5-hydroxycytidine synthase 0.70 EFB2_03971 2-isopropylmalate synthase low > 86
Escherichia coli Nissle 1917 0.75 ECOLIN_RS12250 tRNA 5-hydroxyuridine modification protein YegQ 0.70 ECOLIN_RS00400 2-isopropylmalate synthase low > 55
Pectobacterium carotovorum WPP14 0.75 HER17_RS06280 tRNA 5-hydroxyuridine modification protein YegQ 0.73 HER17_RS03085 2-isopropylmalate synthase low > 75
Enterobacter asburiae PDN3 0.74 EX28DRAFT_0478 Collagenase and related proteases 0.69 EX28DRAFT_3670 2-isopropylmalate synthase (EC 2.3.3.13) low > 76
Enterobacter sp. TBS_079 0.74 MPMX20_03067 23S rRNA 5-hydroxycytidine synthase 0.69 MPMX20_00769 2-isopropylmalate synthase low > 85
Pseudomonas stutzeri RCH2 0.73 Psest_4096 Collagenase and related proteases 0.48 Psest_1056 2-isopropylmalate synthase, bacterial type low > 67
Shewanella oneidensis MR-1 0.73 SO1252 peptidase, U32 family (NCBI ptt file) 0.72 SO4236 leuA 2-isopropylmalate synthase (NCBI ptt file) low > 76
Dickeya dadantii 3937 0.73 DDA3937_RS15295 tRNA 5-hydroxyuridine modification protein YegQ 0.71 DDA3937_RS18115 2-isopropylmalate synthase low > 74
Pantoea sp. MT58 0.73 IAI47_06845 tRNA 5-hydroxyuridine modification protein YegQ 0.68 IAI47_16000 2-isopropylmalate synthase low > 76
Pantoea agglomerans CFBP13505 P0401 0.73 PagCFBP13505_RS00955 U32 family peptidase 0.68 PagCFBP13505_RS13000 2-isopropylmalate synthase low > 74
Shewanella sp. ANA-3 0.72 Shewana3_1068 peptidase U32 (RefSeq) 0.72 Shewana3_3761 2-isopropylmalate synthase (RefSeq) 0.57 67
Dickeya dianthicola 67-19 0.71 HGI48_RS15375 tRNA 5-hydroxyuridine modification protein YegQ 0.71 HGI48_RS18055 2-isopropylmalate synthase low > 71
Dickeya dianthicola ME23 0.71 DZA65_RS16195 tRNA 5-hydroxyuridine modification protein YegQ 0.71 DZA65_RS19200 2-isopropylmalate synthase low > 75
Shewanella loihica PV-4 0.71 Shew_2783 peptidase U32 (RefSeq) 0.71 Shew_3472 2-isopropylmalate synthase (RefSeq) low > 60
Shewanella amazonensis SB2B 0.71 Sama_1004 U32 family peptidase (RefSeq) 0.71 Sama_0335 2-isopropylmalate synthase (RefSeq) low > 62
Alteromonas macleodii MIT1002 0.70 MIT1002_02342 putative protease YhbU precursor 0.66 MIT1002_00949 2-isopropylmalate synthase low > 70
Erwinia tracheiphila HP pepo 2.2 0.70 IJEDHG_18770 yegQ tRNA 5-hydroxyuridine modification protein YegQ 0.69 IJEDHG_05995 leuA 2-isopropylmalate synthase low > 61
Erwinia tracheiphila SCR3 0.70 LU632_RS08665 yegQ tRNA 5-hydroxyuridine modification protein YegQ 0.69 LU632_RS02880 leuA 2-isopropylmalate synthase low > 73
Pseudomonas simiae WCS417 0.69 PS417_10300 protease 0.11 PS417_23110 2-isopropylmalate synthase low > 88
Pseudomonas fluorescens FW300-N1B4 0.69 Pf1N1B4_3925 Putative protease 0.11 Pf1N1B4_847 2-isopropylmalate synthase (EC 2.3.3.13) low > 87
Pseudomonas fluorescens SBW25-INTG 0.69 PFLU_RS10460 tRNA 5-hydroxyuridine modification protein YegQ 0.11 PFLU_RS24765 2-isopropylmalate synthase low > 109
Pseudomonas fluorescens SBW25 0.69 PFLU_RS10460 tRNA 5-hydroxyuridine modification protein YegQ 0.11 PFLU_RS24765 2-isopropylmalate synthase low > 109
Pseudomonas segetis P6 0.69 MPMX49_00744 hypothetical protein 0.13 MPMX49_01526 2-isopropylmalate synthase low > 75
Pseudomonas orientalis W4I3 0.69 QF045_RS12375 tRNA 5-hydroxyuridine modification protein YegQ 0.11 QF045_RS25330 2-isopropylmalate synthase low > 93
Pseudomonas fluorescens GW456-L13 0.68 PfGW456L13_2485 Putative protease 0.11 PfGW456L13_4854 2-isopropylmalate synthase (EC 2.3.3.13) 0.31 68
Pseudomonas sp. DMC3 0.68 GFF1422 23S rRNA 5-hydroxycytidine synthase 0.11 GFF4332 2-isopropylmalate synthase low > 89
Pseudomonas sp. RS175 0.68 PFR28_02843 hypothetical protein 0.11 PFR28_00305 2-isopropylmalate synthase 0.21 28
Pseudomonas fluorescens FW300-N2E2 0.68 Pf6N2E2_45 Putative protease 0.11 Pf6N2E2_3170 2-isopropylmalate synthase (EC 2.3.3.13) low > 103
Pseudomonas sp. S08-1 0.68 OH686_13055 Uncharacterized protease YegQ 0.12 OH686_17570 2-isopropylmalate synthase low > 80
Pseudomonas fluorescens FW300-N2C3 0.67 AO356_21300 protease 0.11 AO356_06550 2-isopropylmalate synthase low > 104
Pseudomonas lactucae CFBP13502 0.67 GEMAOFIL_02169 23S rRNA 5-hydroxycytidine synthase 0.11 GEMAOFIL_04774 2-isopropylmalate synthase low > 96
Pseudomonas sp. SVBP6 0.67 COO64_RS24350 yegQ tRNA 5-hydroxyuridine modification protein YegQ 0.11 COO64_RS04630 leuA 2-isopropylmalate synthase 0.49 39
Pseudomonas putida KT2440 0.65 PP_2206 putative peptidase 0.12 PP_1025 2-isopropylmalate synthase low > 96
Pseudomonas sp. BP01 0.65 JOY50_RS12690 yegQ tRNA 5-hydroxyuridine modification protein YegQ 0.11 JOY50_RS11470 leuA 2-isopropylmalate synthase low > 84
Acinetobacter radioresistens SK82 0.63 MPMX26_02040 23S rRNA 5-hydroxycytidine synthase 0.11 MPMX26_00404 2-isopropylmalate synthase — —
Methylophilus sp. DMC18 0.56 GFF2319 hypothetical protein 0.44 GFF1746 2-isopropylmalate synthase low > 43
Marinobacter adhaerens HP15 0.55 HP15_2983 peptidase, U32 family 0.46 HP15_538 2-isopropylmalate synthase low > 73
Acidovorax sp. GW101-3H11 0.54 Ac3H11_3295 Probable protease (EC 3.4.24.3) 0.42 Ac3H11_530 2-isopropylmalate synthase (EC 2.3.3.13) low > 79
Dechlorosoma suillum PS 0.53 Dsui_0433 collagenase-like protease 0.46 Dsui_3519 2-isopropylmalate synthase, bacterial type low > 51
Desulfovibrio vulgaris Miyazaki F 0.20 DvMF_2645 peptidase U32 (RefSeq) 0.45 DvMF_1791 2-isopropylmalate synthase (RefSeq) low > 51
Methanococcus maripaludis S2 0.16 MMP_RS03460 U32 family peptidase 0.29 MMP_RS05500 2-isopropylmalate synthase low > 25

Not shown: 8 genomes with orthologs for CSW01_03750 only; 46 genomes with orthologs for CSW01_12595 only