Conservation of cofitness between CSW01_03400 and CSW01_12340 in Vibrio cholerae E7946 ATCC 55056

61 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_03400 tRNA pseudouridine(55) synthase TruB 1.0 CSW01_12340 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase 0.55 2
Serratia liquefaciens MT49 0.72 IAI46_01945 tRNA pseudouridine(55) synthase TruB 0.70 IAI46_22055 bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE — —
Dickeya dadantii 3937 0.71 DDA3937_RS03080 tRNA pseudouridine(55) synthase TruB 0.68 DDA3937_RS17100 bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE — —
Dickeya dianthicola 67-19 0.70 HGI48_RS03250 tRNA pseudouridine(55) synthase TruB 0.68 HGI48_RS17150 bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE — —
Dickeya dianthicola ME23 0.69 DZA65_RS03245 tRNA pseudouridine(55) synthase TruB 0.68 DZA65_RS18235 bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE — —
Pectobacterium carotovorum WPP14 0.68 HER17_RS18200 tRNA pseudouridine(55) synthase TruB 0.70 HER17_RS04040 bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE — —
Pantoea agglomerans CFBP13505 P0401 0.68 PagCFBP13505_RS09110 tRNA pseudouridine(55) synthase TruB 0.67 PagCFBP13505_RS11925 bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE — —
Klebsiella michiganensis M5al 0.68 BWI76_RS25080 tRNA pseudouridine(55) synthase 0.68 BWI76_RS24455 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase — —
Pantoea sp. MT58 0.67 IAI47_17015 tRNA pseudouridine(55) synthase TruB 0.67 IAI47_03105 bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE — —
Erwinia amylovora T8 0.67 OLJFJH_07250 tRNA pseudouridine(55) synthase TruB 0.65 OLJFJH_07645 bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.67 OHPLBJKB_00534 tRNA pseudouridine synthase B 0.69 OHPLBJKB_00652 Bifunctional protein HldE — —
Escherichia coli ECOR38 0.67 HEPCGN_17000 truB tRNA pseudouridine(55) synthase TruB 0.69 HEPCGN_17590 hldE bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE — —
Escherichia coli ECRC98 0.67 JDDGAC_21750 truB tRNA pseudouridine(55) synthase TruB 0.69 JDDGAC_22370 hldE bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE — —
Escherichia coli Nissle 1917 0.67 ECOLIN_RS18185 tRNA pseudouridine(55) synthase TruB 0.69 ECOLIN_RS17615 bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE low > 55
Escherichia coli ECRC102 0.67 NIAGMN_15885 truB tRNA pseudouridine(55) synthase TruB 0.69 NIAGMN_16500 hldE bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE — —
Escherichia coli ECRC100 0.67 OKFHMN_18125 truB tRNA pseudouridine(55) synthase TruB 0.69 OKFHMN_18735 hldE bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE — —
Escherichia coli ECRC99 0.67 KEDOAH_10025 truB tRNA pseudouridine(55) synthase TruB 0.69 KEDOAH_09410 hldE bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE — —
Escherichia coli BW25113 0.67 b3166 truB tRNA pseudouridine synthase B (NCBI) 0.69 b3052 rfaE fused heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase (NCBI) low > 76
Escherichia coli BL21 0.67 ECD_03033 tRNA pseudouridine synthase B: tRNA pseudouridine(55) synthase and putative tmRNA pseudouridine(342) synthase 0.69 ECD_02922 heptose 7-phosphate kinase and heptose 1-phosphate adenyltransferase — —
Escherichia coli ECRC101 0.67 MCAODC_08645 truB tRNA pseudouridine(55) synthase TruB 0.69 MCAODC_09250 hldE bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE — —
Escherichia fergusonii Becca 0.67 EFB2_00657 tRNA pseudouridine synthase B 0.69 EFB2_00759 Bifunctional protein HldE — —
Klebsiella pneumoniae MKP103 0.67 KDGMDA_05890 tRNA pseudouridine(55) synthase TruB 0.68 KDGMDA_05265 bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.67 GFF1500 tRNA pseudouridine synthase B (EC 4.2.1.70) 0.69 GFF3166 ADP-heptose synthase (EC 2.7.-.-) / D-glycero-beta-D-manno-heptose 7-phosphate kinase low > 78
Escherichia coli ECRC62 0.67 BNILDI_01610 truB tRNA pseudouridine(55) synthase TruB 0.69 BNILDI_00995 hldE bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE — —
Escherichia coli ECOR27 0.67 NOLOHH_09925 truB tRNA pseudouridine(55) synthase TruB 0.69 NOLOHH_10520 hldE bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE — —
Enterobacter asburiae PDN3 0.66 EX28DRAFT_3217 tRNA pseudouridine(55) synthase 0.68 EX28DRAFT_3080 rfaE bifunctional protein, domain I/rfaE bifunctional protein, domain II — —
Enterobacter sp. TBS_079 0.66 MPMX20_04071 tRNA pseudouridine synthase B 0.69 MPMX20_03889 Bifunctional protein HldE — —
Erwinia tracheiphila SCR3 0.66 LU632_RS21050 truB tRNA pseudouridine(55) synthase TruB 0.69 LU632_RS20670 hldE bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE — —
Erwinia tracheiphila HP pepo 2.2 0.65 IJEDHG_13945 truB tRNA pseudouridine(55) synthase TruB 0.69 IJEDHG_14390 hldE bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE — —
Rahnella sp. WP5 0.65 EX31_RS08530 tRNA pseudouridine(55) synthase TruB 0.69 EX31_RS08140 bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE low > 89
Shewanella sp. ANA-3 0.64 Shewana3_1032 tRNA pseudouridine synthase B (RefSeq) 0.65 Shewana3_0849 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase (RefSeq) low > 73
Shewanella loihica PV-4 0.64 Shew_2825 tRNA pseudouridine synthase B (RefSeq) 0.63 Shew_0659 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase (RefSeq) low > 60
Shewanella amazonensis SB2B 0.63 Sama_0963 pseudouridylate synthase (RefSeq) 0.61 Sama_0731 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase (RefSeq) — —
Kangiella aquimarina DSM 16071 0.50 B158DRAFT_0108 tRNA pseudouridine 55 synthase 0.55 B158DRAFT_1987 D-alpha,beta-D-heptose 7-phosphate 1-kinase (EC 2.7.1.167)/D-beta-D-heptose 1-phosphate adenylyltransferase (EC 2.7.7.70) low > 40
Pseudomonas syringae pv. syringae B728a ΔmexB 0.46 Psyr_4178 tRNA pseudouridine synthase B 0.57 Psyr_0537 D-alpha,beta-D-heptose 7-phosphate 1-kinase / D-beta-D-heptose 1-phosphate adenylyltransferase — —
Pseudomonas stutzeri RCH2 0.46 Psest_0983 tRNA pseudouridine 55 synthase 0.59 Psest_0470 rfaE bifunctional protein, domain I/rfaE bifunctional protein, domain II — —
Pseudomonas syringae pv. syringae B728a 0.46 Psyr_4178 tRNA pseudouridine synthase B 0.57 Psyr_0537 D-alpha,beta-D-heptose 7-phosphate 1-kinase / D-beta-D-heptose 1-phosphate adenylyltransferase — —
Pseudomonas putida KT2440 0.46 PP_4710 tRNA pseudouridine 55 synthase 0.56 PP_4934 heptose 7-phosphate kinase/heptose 1-phosphate adenylyltransferase — —
Pseudomonas sp. BP01 0.46 JOY50_RS26845 truB tRNA pseudouridine(55) synthase TruB 0.58 JOY50_RS10025 hldE bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE — —
Pseudomonas sp. DMC3 0.46 GFF4990 tRNA pseudouridine synthase B 0.57 GFF3175 Bifunctional protein HldE — —
Pseudomonas fluorescens GW456-L13 0.45 PfGW456L13_5086 tRNA pseudouridine synthase B (EC 4.2.1.70) 0.57 PfGW456L13_195 ADP-heptose synthase (EC 2.7.-.-) / D-glycero-beta-D-manno-heptose 7-phosphate kinase — —
Pseudomonas fluorescens FW300-N2E3 0.45 AO353_05550 pseudouridine synthase 0.57 AO353_12970 heptose 1-phosphate adenyltransferase — —
Pseudomonas fluorescens FW300-N1B4 0.45 Pf1N1B4_1159 tRNA pseudouridine synthase B (EC 4.2.1.70) 0.57 Pf1N1B4_1455 ADP-heptose synthase (EC 2.7.-.-) / D-glycero-beta-D-manno-heptose 7-phosphate kinase — —
Pseudomonas fluorescens FW300-N2E2 0.45 Pf6N2E2_3351 tRNA pseudouridine synthase B (EC 4.2.1.70) 0.57 Pf6N2E2_3653 ADP-heptose synthase (EC 2.7.-.-) / D-glycero-beta-D-manno-heptose 7-phosphate kinase — —
Pseudomonas sp. RS175 0.45 PFR28_00092 tRNA pseudouridine synthase B 0.57 PFR28_05083 Bifunctional protein HldE — —
Pseudomonas sp. S08-1 0.44 OH686_17155 tRNA pseudouridine(55) synthase 0.58 OH686_09595 D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase / D-glycero-beta-D-manno-heptose-7-phosphate kinase — —
Pseudomonas fluorescens FW300-N2C3 0.44 AO356_07400 pseudouridine synthase 0.57 AO356_08850 heptose 1-phosphate adenyltransferase — —
Pseudomonas segetis P6 0.44 MPMX49_01203 tRNA pseudouridine synthase B 0.59 MPMX49_04194 Bifunctional protein HldE — —
Pseudomonas sp. SVBP6 0.44 COO64_RS15160 truB tRNA pseudouridine(55) synthase TruB 0.57 COO64_RS17715 hldE bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE — —
Pseudomonas fluorescens SBW25 0.44 PFLU_RS25800 tRNA pseudouridine(55) synthase TruB 0.58 PFLU_RS02385 bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE — —
Pseudomonas simiae WCS417 0.44 PS417_23960 pseudouridine synthase 0.58 PS417_02310 heptose 1-phosphate adenyltransferase — —
Pseudomonas fluorescens SBW25-INTG 0.44 PFLU_RS25800 tRNA pseudouridine(55) synthase TruB 0.58 PFLU_RS02385 bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE — —
Pseudomonas lactucae CFBP13502 0.44 GEMAOFIL_04943 tRNA pseudouridine synthase B 0.58 GEMAOFIL_00699 Bifunctional protein HldE — —
Pseudomonas aeruginosa PA14 0.43 IKLFDK_29890 tRNA pseudouridine(55) synthase TruB 0.58 IKLFDK_28555 bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE — —
Methylophilus sp. DMC18 0.42 GFF2846 tRNA pseudouridine synthase B 0.35 GFF295 Bifunctional protein HldE — —
Xanthobacter sp. DMC5 0.36 GFF2293 tRNA pseudouridine synthase B 0.35 GFF1105 Bifunctional protein HldE — —
Rhodopseudomonas palustris CGA009 0.33 TX73_002255 tRNA pseudouridine(55) synthase TruB 0.31 TX73_020645 D-glycero-beta-D-manno-heptose-7-phosphate kinase — —
Azospirillum sp. SherDot2 0.33 MPMX19_02524 tRNA pseudouridine synthase B 0.36 MPMX19_02117 Bifunctional protein HldE — —
Caulobacter crescentus NA1000 0.31 CCNA_00035 tRNA pseudouridine synthase B 0.34 CCNA_03755 bifunctional D-glycero-D-manno-heptose-7-phosphate 1-kinase/D-glycero-D-manno-heptose-1-phosphate adenylyltransferase low > 66
Caulobacter crescentus NA1000 Δfur 0.31 CCNA_00035 tRNA pseudouridine synthase B 0.34 CCNA_03755 bifunctional D-glycero-D-manno-heptose-7-phosphate 1-kinase/D-glycero-D-manno-heptose-1-phosphate adenylyltransferase low > 67
Magnetospirillum magneticum AMB-1 0.29 AMB_RS20810 tRNA pseudouridine(55) synthase TruB 0.34 AMB_RS03985 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase — —
Rhodospirillum rubrum S1H 0.28 Rru_A3783 tRNA pseudouridine synthase B (NCBI) 0.34 Rru_A0123 RfaE-HldE bifunctional protein, D-beta-D-heptose 7-phosphate kinase, D-beta-D-heptose 1-phosphate adenosyltransferase (NCBI) — —

Not shown: 36 genomes with orthologs for CSW01_03400 only; 3 genomes with orthologs for CSW01_12340 only