Conservation of cofitness between CSW01_09605 and CSW01_12335 in Vibrio cholerae E7946 ATCC 55056

66 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_09605 endopeptidase La 1.0 CSW01_12335 outer membrane protein TolC 0.78 14
Dickeya dadantii 3937 0.84 DDA3937_RS05650 endopeptidase La 0.42 DDA3937_RS01740 outer membrane channel protein TolC low > 74
Pectobacterium carotovorum WPP14 0.84 HER17_RS15840 endopeptidase La 0.43 HER17_RS19825 outer membrane channel protein TolC — —
Dickeya dianthicola 67-19 0.83 HGI48_RS05695 endopeptidase La 0.42 HGI48_RS01635 outer membrane channel protein TolC low > 71
Dickeya dianthicola ME23 0.83 DZA65_RS06020 endopeptidase La 0.42 DZA65_RS01710 outer membrane channel protein TolC low > 75
Klebsiella michiganensis M5al 0.83 BWI76_RS06535 endopeptidase La 0.43 BWI76_RS24400 outer membrane channel protein TolC low > 92
Klebsiella pneumoniae MKP103 0.83 KDGMDA_14620 Lon protease 0.43 KDGMDA_05225 outer membrane channel protein TolC low > 94
Erwinia amylovora T8 0.83 OLJFJH_17960 endopeptidase La 0.41 OLJFJH_07675 outer membrane channel protein TolC low > 58
Serratia liquefaciens MT49 0.83 IAI46_05020 endopeptidase La 0.42 IAI46_21945 outer membrane channel protein TolC low > 87
Klebsiella pneumoniae MRSN742743 0.83 GJGHJB_03868 lon endopeptidase La 0.43 GJGHJB_00669 tolC outer membrane channel protein TolC low > 83
Shewanella loihica PV-4 0.83 Shew_2506 ATP-dependent protease La (RefSeq) 0.45 Shew_0544 tolC outer membrane channel protein (RefSeq) — —
Pantoea sp. MT58 0.83 IAI47_14645 endopeptidase La 0.43 IAI47_03135 outer membrane channel protein TolC — —
Enterobacter asburiae PDN3 0.83 EX28DRAFT_2531 endopeptidase La 0.43 EX28DRAFT_3073 type I secretion outer membrane protein, TolC family low > 76
Erwinia tracheiphila HP pepo 2.2 0.83 IJEDHG_16450 lon endopeptidase La 0.41 IJEDHG_14425 tolC outer membrane channel protein TolC — —
Pantoea agglomerans CFBP13505 P0401 0.83 PagCFBP13516_RS14895 lon endopeptidase La 0.43 PagCFBP13516_RS03375 tolC outer membrane channel protein TolC — —
Erwinia tracheiphila SCR3 0.83 LU632_RS18335 lon endopeptidase La 0.41 LU632_RS20635 tolC outer membrane channel protein TolC — —
Enterobacter sp. TBS_079 0.83 MPMX20_01030 Lon protease 0.43 MPMX20_03882 Outer membrane protein TolC low > 85
Rahnella sp. WP5 0.82 EX31_RS22255 endopeptidase La 0.42 EX31_RS08100 outer membrane channel protein TolC low > 89
Escherichia coli ECRC99 0.82 KEDOAH_19645 Lon protease 0.42 KEDOAH_09340 tolC outer membrane channel protein TolC — —
Escherichia coli ECRC101 0.82 MCAODC_27545 Lon protease 0.42 MCAODC_09320 tolC outer membrane channel protein TolC 0.38 68
Escherichia coli ECRC100 0.82 OKFHMN_08320 Lon protease 0.42 OKFHMN_18805 tolC outer membrane channel protein TolC low > 79
Escherichia coli ECRC102 0.82 NIAGMN_06375 Lon protease 0.42 NIAGMN_16570 tolC outer membrane channel protein TolC — —
Escherichia coli ECRC98 0.82 JDDGAC_11975 Lon protease 0.42 JDDGAC_22440 tolC outer membrane channel protein TolC 0.42 5
Shewanella oneidensis MR-1 0.82 SO1796 lon ATP-dependent protease La (NCBI ptt file) 0.47 SO3904 tolC outer membrane protein TolC (NCBI ptt file) low > 76
Escherichia coli ECRC62 0.82 BNILDI_22670 lon_P403L Lon protease 0.42 BNILDI_00905 tolC outer membrane channel protein TolC low > 75
Escherichia coli BL21 0.82 ECD_00391 DNA-binding ATP-dependent protease La 0.42 ECD_02907 transport channel low > 61
Escherichia coli HS(pFamp)R (ATCC 700891) 0.82 OHPLBJKB_03234 Lon protease 0.42 OHPLBJKB_00668 Outer membrane protein TolC low > 74
Escherichia coli ECOR27 0.82 NOLOHH_01255 lon_P403L Lon protease 0.42 NOLOHH_10610 tolC outer membrane channel protein TolC low > 75
Escherichia coli ECOR38 0.82 HEPCGN_06935 lon_P403L Lon protease 0.42 HEPCGN_17680 tolC outer membrane channel protein TolC 0.51 76
Escherichia coli BW25113 0.82 b0439 lon DNA-binding ATP-dependent protease La (NCBI) 0.42 b3035 tolC outer membrane channel; specific tolerance to colicin E1; segregation of daughter chromosomes (VIMSS) low > 76
Escherichia coli Nissle 1917 0.82 ECOLIN_RS02635 endopeptidase La 0.42 ECOLIN_RS17515 outer membrane channel protein TolC 0.77 24
Shewanella sp. ANA-3 0.82 Shewana3_2659 Lon-A peptidase (RefSeq) 0.47 Shewana3_0725 tolC outer membrane channel protein (RefSeq) — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.82 GFF4355 ATP-dependent protease La (EC 3.4.21.53) Type I 0.43 GFF3149 Type I secretion outer membrane protein, TolC precursor low > 78
Escherichia fergusonii Becca 0.82 EFB2_03618 Lon protease 0.42 EFB2_00773 Outer membrane protein TolC low > 86
Alteromonas macleodii MIT1002 0.81 MIT1002_02757 Lon protease 0.44 MIT1002_00670 Outer membrane protein TolC precursor low > 70
Shewanella amazonensis SB2B 0.81 Sama_1226 endopeptidase La (RefSeq) 0.44 Sama_3048 tolC outer membrane channel protein (RefSeq) low > 62
Pseudomonas aeruginosa MRSN321 0.70 PFGADD_03324 lon endopeptidase La 0.29 PFGADD_05210 opmH efflux transporter outer membrane subunit OpmH low > 99
Pseudomonas aeruginosa PUPa3 0.70 NPBIFN_03360 lon endopeptidase La 0.29 NPBIFN_05286 opmH efflux transporter outer membrane subunit OpmH low > 101
Pseudomonas aeruginosa PA14 0.70 IKLFDK_08760 endopeptidase La 0.29 IKLFDK_28670 efflux transporter outer membrane subunit OpmH low > 98
Pseudomonas segetis P6 0.69 ACVTMO_RS11250 lon endopeptidase La 0.29 ACVTMO_RS20760 TolC family outer membrane protein low > 75
Pseudomonas stutzeri RCH2 0.69 Psest_2285 ATP-dependent protease La 0.29 Psest_0476 type I secretion outer membrane protein, TolC family low > 67
Kangiella aquimarina DSM 16071 0.69 B158DRAFT_1038 ATP-dependent protease La 0.28 B158DRAFT_0973 type I secretion outer membrane protein, TolC family low > 40
Pseudomonas lactucae CFBP13502 0.69 GEMAOFIL_03741 Lon protease 0.28 GEMAOFIL_00707 Outer membrane protein TolC low > 96
Pseudomonas orientalis W4I3 0.69 QF045_RS18890 endopeptidase La 0.28 QF045_RS05410 TolC family outer membrane protein low > 93
Pseudomonas protegens RBAN4 0.69 FABNJH_20600 lon endopeptidase La 0.29 FABNJH_02785 tolC Outer membrane channel TolC (OpmH) — —
Pseudomonas fluorescens GW456-L13 0.69 PfGW456L13_2554 ATP-dependent protease La (EC 3.4.21.53) Type I 0.27 PfGW456L13_188 Type I secretion outer membrane protein, TolC precursor low > 87
Pseudomonas simiae WCS417 0.68 PS417_17225 DNA-binding protein 0.28 PS417_02350 channel protein TolC — —
Pseudomonas sp. RS175 0.68 PFR28_01230 Lon protease 0.28 PFR28_05090 Outer membrane protein TolC low > 88
Pseudomonas fluorescens FW300-N2E2 0.68 Pf6N2E2_2216 ATP-dependent protease La (EC 3.4.21.53) Type I 0.29 Pf6N2E2_3645 Type I secretion outer membrane protein, TolC precursor — —
Pseudomonas fluorescens FW300-N1B4 0.68 Pf1N1B4_3947 ATP-dependent protease La (EC 3.4.21.53) Type I 0.28 Pf1N1B4_1448 Type I secretion outer membrane protein, TolC precursor — —
Pseudomonas fluorescens FW300-N2C3 0.68 AO356_01740 DNA-binding protein 0.29 AO356_08815 channel protein TolC low > 104
Pseudomonas fluorescens SBW25 0.68 PFLU_RS19160 endopeptidase La 0.28 PFLU_RS02425 TolC family outer membrane protein low > 109
Pseudomonas fluorescens SBW25-INTG 0.68 PFLU_RS19160 endopeptidase La 0.28 PFLU_RS02425 TolC family outer membrane protein low > 109
Pseudomonas fluorescens FW300-N2E3 0.68 AO353_20185 DNA-binding protein 0.28 AO353_13005 channel protein TolC low > 101
Pseudomonas syringae pv. syringae B728a 0.68 Psyr_1749 ATP-dependent proteinase, Serine peptidase, MEROPS family S16 0.29 Psyr_0543 Type I secretion outer membrane protein, TolC low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.68 Psyr_1749 ATP-dependent proteinase, Serine peptidase, MEROPS family S16 0.29 Psyr_0543 Type I secretion outer membrane protein, TolC low > 86
Pseudomonas sp. DMC3 0.68 GFF1445 Lon protease 0.26 GFF3182 Outer membrane protein TolC low > 89
Pseudomonas sp. FW215-L2 0.68 GFF4918 Lon protease 0.29 GFF2350 Outer membrane protein TolC low > 111
Pseudomonas sp. S08-1 0.68 OH686_03635 endopeptidase La 0.28 OH686_15890 Outer membrane channel TolC (OpmH) low > 80
Pseudomonas putida KT2440 0.68 PP_2302 DNA-binding, ATP-dependent protease 0.28 PP_4923 Outer membrane efflux protein low > 96
Methylophilus sp. DMC18 0.68 GFF1305 Lon protease 0.26 GFF2824 Outer membrane protein TolC low > 43
Pseudomonas sp. BP01 0.67 JOY50_RS25905 lon endopeptidase La 0.28 JOY50_RS10060 TolC family outer membrane protein low > 84
Marinobacter adhaerens HP15 0.67 HP15_2183 DNA-binding ATP-dependent protease La 0.26 HP15_451 type I secretion outer membrane protein, TolC family — —
Pseudomonas sp. SVBP6 0.67 COO64_RS19205 lon endopeptidase La 0.27 COO64_RS17750 TolC family outer membrane protein low > 91
Rhodanobacter sp000427505 FW510-R12 0.67 LRK53_RS12135 endopeptidase La 0.25 LRK53_RS01735 TolC family outer membrane protein low > 59
Dyella japonica UNC79MFTsu3.2 0.66 ABZR86_RS07320 endopeptidase La 0.26 ABZR86_RS17210 TolC family outer membrane protein low > 74
Variovorax sp. OAS795 0.66 ABID97_RS17590 endopeptidase La 0.26 ABID97_RS21375 TolC family outer membrane protein low > 91

Not shown: 54 genomes with orthologs for CSW01_09605 only; 0 genomes with orthologs for CSW01_12335 only