Conservation of cofitness between CSW01_07515 and CSW01_10265 in Vibrio cholerae E7946 ATCC 55056

58 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_07515 tail-specific protease 1.0 CSW01_10265 c-type cytochrome biogenesis protein CcmF 0.76 5
Shewanella loihica PV-4 0.60 Shew_1802 carboxy-terminal protease (RefSeq) 0.51 Shew_0193 cytochrome c-type biogenesis protein CcmF (RefSeq) low > 60
Shewanella amazonensis SB2B 0.59 Sama_1585 carboxy-terminal protease (RefSeq) 0.51 Sama_0248 cytochrome c-type biogenesis protein CcmF (RefSeq) low > 62
Shewanella sp. ANA-3 0.58 Shewana3_1778 carboxy-terminal protease (RefSeq) 0.50 Shewana3_0234 cytochrome c-type biogenesis protein CcmF (RefSeq) low > 73
Shewanella oneidensis MR-1 0.58 SO2601 carboxyl-terminal protease (NCBI ptt file) 0.49 SO0266 ccmF-1 cytochrome c-type biogenesis protein CcmF (NCBI ptt file) low > 76
Pectobacterium carotovorum WPP14 0.57 HER17_RS11690 carboxy terminal-processing peptidase 0.63 HER17_RS09055 heme lyase CcmF/NrfE family subunit low > 75
Klebsiella pneumoniae MKP103 0.57 KDGMDA_25245 carboxy terminal-processing peptidase 0.62 KDGMDA_23845 cytochrome c maturation protein CcmE low > 95
Serratia liquefaciens MT49 0.57 IAI46_10800 carboxy terminal-processing peptidase 0.65 IAI46_18085 heme lyase CcmF/NrfE family subunit low > 87
Escherichia fergusonii Becca 0.57 EFB2_02171 Tail-specific protease 0.60 EFB2_01660 Cytochrome c-type biogenesis protein CcmF low > 86
Escherichia coli ECRC99 0.57 KEDOAH_01640 prc carboxy terminal-processing peptidase 0.60 KEDOAH_04880 ccmF cytochrome c-type biogenesis heme lyase CcmF — —
Escherichia coli ECRC101 0.57 MCAODC_18940 prc carboxy terminal-processing peptidase 0.60 MCAODC_14355 ccmF cytochrome c-type biogenesis heme lyase CcmF low > 87
Escherichia coli ECRC100 0.57 OKFHMN_26465 prc carboxy terminal-processing peptidase 0.60 OKFHMN_23305 ccmF cytochrome c-type biogenesis heme lyase CcmF low > 79
Escherichia coli BL21 0.57 ECD_01801 carboxy-terminal protease for penicillin-binding protein 3 0.60 ECD_02123 heme lyase, CcmF subunit low > 61
Escherichia coli ECRC98 0.57 JDDGAC_01040 prc carboxy terminal-processing peptidase 0.60 JDDGAC_27265 ccmF cytochrome c-type biogenesis heme lyase CcmF low > 87
Escherichia coli Nissle 1917 0.57 ECOLIN_RS10190 carboxy terminal-processing peptidase 0.60 ECOLIN_RS12835 cytochrome c-type biogenesis heme lyase CcmF — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.57 OHPLBJKB_01901 Tail-specific protease 0.60 OHPLBJKB_01515 Cytochrome c-type biogenesis protein CcmF low > 74
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.57 GFF2845 Tail-specific protease precursor (EC 3.4.21.102) 0.58 GFF4877 Cytochrome c heme lyase subunit CcmF — —
Escherichia coli ECOR27 0.57 NOLOHH_16975 prc carboxy terminal-processing peptidase 0.60 NOLOHH_14880 ccmF cytochrome c-type biogenesis heme lyase CcmF low > 76
Escherichia coli ECRC102 0.57 NIAGMN_01595 prc carboxy terminal-processing peptidase 0.60 NIAGMN_21070 ccmF cytochrome c-type biogenesis heme lyase CcmF low > 80
Escherichia coli BW25113 0.57 b1830 prc carboxy-terminal protease for penicillin-binding protein 3 (NCBI) 0.60 b2196 ccmF heme lyase, CcmF subunit (NCBI) low > 76
Escherichia coli ECOR38 0.57 HEPCGN_04865 prc carboxy terminal-processing peptidase 0.60 HEPCGN_22570 ccmF cytochrome c-type biogenesis heme lyase CcmF low > 88
Escherichia coli ECRC62 0.57 BNILDI_15770 prc carboxy terminal-processing peptidase 0.60 BNILDI_13800 ccmF cytochrome c-type biogenesis heme lyase CcmF low > 75
Pantoea sp. MT58 0.56 IAI47_08705 carboxy terminal-processing peptidase 0.65 IAI47_06090 heme lyase CcmF/NrfE family subunit low > 76
Pantoea agglomerans CFBP13505 P0401 0.56 PagCFBP13505_RS02535 carboxy terminal-processing peptidase 0.64 PagCFBP13505_RS00045 heme lyase CcmF/NrfE family subunit low > 74
Erwinia amylovora T8 0.56 OLJFJH_13010 carboxy terminal-processing peptidase 0.63 OLJFJH_11100 heme lyase NrfEFG subunit NrfE — —
Rahnella sp. WP5 0.55 EX31_RS24880 carboxy terminal-processing peptidase 0.67 EX31_RS19745 heme lyase CcmF/NrfE family subunit low > 89
Alteromonas macleodii MIT1002 0.52 MIT1002_02025 Tail-specific protease precursor 0.56 MIT1002_00965 Cytochrome c-type biogenesis protein CcmF — —
Pseudomonas stutzeri RCH2 0.41 Psest_2951 C-terminal peptidase (prc) 0.51 Psest_1759 c-type cytochrome biogenesis protein CcmF — —
Pseudomonas sp. S08-1 0.40 OH686_19710 Tail-specific protease precursor 0.51 OH686_02635 cytochrome c-type biogenesis protein CcmF — —
Pseudomonas aeruginosa MRSN321 0.40 DY961_RS00630 carboxy terminal-processing peptidase 0.49 DY961_RS05510 heme lyase CcmF/NrfE family subunit — —
Pseudomonas aeruginosa PUPa3 0.40 DQ20_RS40405 carboxy terminal-processing peptidase 0.49 DQ20_RS47280 heme lyase CcmF/NrfE family subunit — —
Pseudomonas aeruginosa PA14 0.40 IKLFDK_16655 tail-specific protease 0.49 IKLFDK_07040 Cytochrome c-type biogenesis protein CcmF — —
Pseudomonas segetis P6 0.40 MPMX49_01745 Tail-specific protease 0.55 MPMX49_03107 Cytochrome c-type biogenesis protein CcmF — —
Kangiella aquimarina DSM 16071 0.39 B158DRAFT_1732 C-terminal peptidase (prc) 0.54 B158DRAFT_1328 c-type cytochrome biogenesis protein CcmF low > 40
Pseudomonas syringae pv. syringae B728a 0.39 Psyr_1599 C-terminal processing peptidase-1, Serine peptidase, MEROPS family S41A 0.52 Psyr_3388 Cytochrome c-type biogenesis protein CcmF — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.39 Psyr_1599 C-terminal processing peptidase-1, Serine peptidase, MEROPS family S41A 0.52 Psyr_3388 Cytochrome c-type biogenesis protein CcmF — —
Pseudomonas fluorescens FW300-N1B4 0.39 Pf1N1B4_3741 Periplasmic protease 0.51 Pf1N1B4_3644 Cytochrome c heme lyase subunit CcmF — —
Pseudomonas sp. RS175 0.39 PFR28_03169 Tail-specific protease 0.52 PFR28_00870 Cytochrome c-type biogenesis protein CcmF — —
Pseudomonas sp. DMC3 0.39 GFF2584 Tail-specific protease 0.51 GFF2490 Cytochrome c-type biogenesis protein CcmF — —
Pseudomonas fluorescens FW300-N2C3 0.39 AO356_19335 peptidase S41 0.52 AO356_03635 cytochrome C biogenesis protein CcmF — —
Pseudomonas simiae WCS417 0.39 PS417_09325 peptidase S41 0.52 PS417_08715 cytochrome C biogenesis protein CcmF — —
Pseudomonas sp. SVBP6 0.39 COO64_RS06980 carboxy terminal-processing peptidase 0.50 COO64_RS25715 heme lyase CcmF/NrfE family subunit — —
Pseudomonas fluorescens GW456-L13 0.39 PfGW456L13_4207 Periplasmic protease 0.53 PfGW456L13_4311 Cytochrome c heme lyase subunit CcmF — —
Pseudomonas fluorescens FW300-N2E2 0.38 Pf6N2E2_5780 Periplasmic protease 0.51 Pf6N2E2_2555 Cytochrome c heme lyase subunit CcmF — —
Pseudomonas putida KT2440 0.38 PP_1719 Tail-specific protease prc 0.50 PP_4322 holocytochrome c synthetase — —
Pseudomonas orientalis W4I3 0.38 QF045_RS11970 carboxy terminal-processing peptidase 0.51 QF045_RS11430 heme lyase CcmF/NrfE family subunit — —
Rhodanobacter denitrificans MT42 0.38 LRK55_RS06215 carboxy terminal-processing peptidase 0.48 LRK55_RS15815 heme lyase CcmF/NrfE family subunit low > 63
Pseudomonas fluorescens SBW25 0.38 PFLU_RS09980 peptidase S41 0.51 PFLU_RS08670 heme lyase CcmF/NrfE family subunit low > 109
Pseudomonas fluorescens SBW25-INTG 0.38 PFLU_RS09980 peptidase S41 0.51 PFLU_RS08670 heme lyase CcmF/NrfE family subunit low > 109
Pseudomonas sp. BP01 0.38 JOY50_RS27880 carboxy terminal-processing peptidase 0.49 JOY50_RS00480 heme lyase CcmF/NrfE family subunit — —
Rhodanobacter denitrificans FW104-10B01 0.38 LRK54_RS06470 carboxy terminal-processing peptidase 0.48 LRK54_RS16065 heme lyase CcmF/NrfE family subunit — —
Pseudomonas lactucae CFBP13502 0.38 GEMAOFIL_02031 Tail-specific protease 0.51 GEMAOFIL_01875 Cytochrome c-type biogenesis protein CcmF — —
Rhodanobacter sp000427505 FW510-R12 0.38 LRK53_RS17760 carboxy terminal-processing peptidase 0.45 LRK53_RS12730 heme lyase CcmF/NrfE family subunit — —
Pseudomonas fluorescens FW300-N2E3 0.38 AO353_02440 peptidase S41 0.51 AO353_18875 cytochrome C biogenesis protein CcmF — —
Rhodanobacter sp. FW510-T8 0.38 OKGIIK_00110 ctpA C-terminal processing protease CtpA/Prc, contains a PDZ domain 0.46 OKGIIK_08585 ccmF c-type cytochrome biogenesis protein CcmF — —
Rhizobium sp. OAE497 0.38 ABIE40_RS24920 carboxy terminal-processing peptidase 0.43 ABIE40_RS05685 heme lyase CcmF/NrfE family subunit low > 107
Dyella japonica UNC79MFTsu3.2 0.38 ABZR86_RS17510 carboxy terminal-processing peptidase 0.48 ABZR86_RS06445 heme lyase CcmF/NrfE family subunit — —
Xanthomonas campestris pv. campestris strain 8004 0.38 Xcc-8004.914.1 tail-specific protease 0.47 Xcc-8004.3190.1 Cytochrome c heme lyase subunit CcmF low > 74
Marinobacter adhaerens HP15 0.37 HP15_1231 periplasmic tail-specific proteinase 0.51 HP15_2281 cytochrome c assembly protein — —

Not shown: 14 genomes with orthologs for CSW01_07515 only; 20 genomes with orthologs for CSW01_10265 only