Conservation of cofitness between CSW01_19135 and CSW01_07480 in Vibrio cholerae E7946 ATCC 55056

45 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_19135 MarR family transcriptional regulator 1.0 CSW01_07480 ribosomal RNA large subunit methyltransferase K/L 0.57 6
Shewanella loihica PV-4 0.61 Shew_0799 MarR family transcriptional regulator (RefSeq) 0.50 Shew_1812 23S rRNA m(2)G2445 methyltransferase (RefSeq) low > 60
Shewanella sp. ANA-3 0.57 Shewana3_3311 MarR family transcriptional regulator (RefSeq) 0.49 Shewana3_1601 rlmL 23S rRNA m(2)G2445 methyltransferase (RefSeq) low > 73
Shewanella oneidensis MR-1 0.57 SO0977 transcriptional regulator, MarR family (NCBI ptt file) 0.49 SO1851 conserved hypothetical protein (NCBI ptt file) low > 76
Shewanella amazonensis SB2B 0.54 Sama_0628 MarR family transcriptional regulator (RefSeq) 0.50 Sama_1600 rlmL 23S rRNA m(2)G2445 methyltransferase (RefSeq) low > 62
Dyella japonica UNC79MFTsu3.2 0.47 ABZR86_RS08950 MarR family transcriptional regulator 0.41 ABZR86_RS21235 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 74
Serratia liquefaciens MT49 0.45 IAI46_00420 MarR family transcriptional regulator 0.56 IAI46_08820 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 87
Pseudomonas sp. S08-1 0.43 OH686_22590 Organic hydroperoxide resistance transcriptional regulator 0.41 OH686_03110 23S rRNA (guanine(2445)-N(2))-methyltransferase / 23S rRNA (guanine(2069)-N(7))-methyltransferase low > 80
Xanthomonas campestris pv. campestris strain 8004 0.43 Xcc-8004.339.1 Organic hydroperoxide resistance transcriptional regulator 0.38 Xcc-8004.3335.1 23S rRNA (guanine-N-2-) -methyltransferase rlmL EC 2.1.1.-) low > 74
Pseudomonas fluorescens FW300-N2E3 0.43 AO353_19165 MarR family transcriptional regulator 0.41 AO353_00775 50S rRNA methyltransferase low > 101
Enterobacter sp. TBS_079 0.43 MPMX20_00654 Organic hydroperoxide resistance transcriptional regulator 0.56 MPMX20_01599 Ribosomal RNA large subunit methyltransferase K/L low > 85
Pectobacterium carotovorum WPP14 0.42 HER17_RS06400 MarR family transcriptional regulator 0.56 HER17_RS11990 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 75
Rahnella sp. WP5 0.42 EX31_RS05595 MarR family transcriptional regulator 0.55 EX31_RS18080 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 89
Pseudomonas segetis P6 0.42 ACVTMO_RS08525 MarR family winged helix-turn-helix transcriptional regulator 0.41 ACVTMO_RS14985 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 75
Pseudomonas aeruginosa PA14 0.42 IKLFDK_14350 hydroperoxide stress response transcriptional regulator OspR 0.42 IKLFDK_15510 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 98
Pseudomonas sp. DMC3 0.42 GFF4593 Organic hydroperoxide resistance transcriptional regulator 0.42 GFF5254 Ribosomal RNA large subunit methyltransferase K/L low > 89
Pseudomonas aeruginosa MRSN321 0.42 PFGADD_02149 ospR hydroperoxide stress response transcriptional regulator OspR 0.42 PFGADD_01919 rlmL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 99
Pantoea agglomerans CFBP13505 P0401 0.42 PagCFBP13516_RS18980 MarR family winged helix-turn-helix transcriptional regulator 0.57 PagCFBP13516_RS12775 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 80
Pantoea sp. MT58 0.42 IAI47_18675 MarR family transcriptional regulator 0.57 IAI47_12690 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 76
Pseudomonas aeruginosa PUPa3 0.42 NPBIFN_02189 ospR hydroperoxide stress response transcriptional regulator OspR 0.42 NPBIFN_01958 rlmL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 101
Lysobacter sp. OAE881 0.42 ABIE51_RS14315 MarR family transcriptional regulator 0.37 ABIE51_RS14475 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 62
Pseudomonas simiae WCS417 0.41 PS417_08575 MarR family transcriptional regulator 0.41 PS417_20930 50S rRNA methyltransferase low > 88
Pseudomonas syringae pv. syringae B728a 0.41 Psyr_3626 transcriptional regulator, MarR family 0.42 Psyr_2108 23S rRNA m(2)G-2445 methyltransferase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.41 Psyr_3626 transcriptional regulator, MarR family 0.42 Psyr_2108 23S rRNA m(2)G-2445 methyltransferase low > 86
Dickeya dadantii 3937 0.41 DDA3937_RS18760 MarR family transcriptional regulator 0.56 DDA3937_RS12840 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 74
Erwinia tracheiphila SCR3 0.40 LU632_RS00235 MarR family transcriptional regulator 0.54 LU632_RS09965 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 73
Pseudomonas fluorescens FW300-N1B4 0.40 Pf1N1B4_258 Organic hydroperoxide resistance transcriptional regulator 0.41 Pf1N1B4_3844 23S rRNA (guanine-N-2-) -methyltransferase rlmL EC 2.1.1.-) low > 87
Pseudomonas fluorescens GW456-L13 0.40 PfGW456L13_2255 Organic hydroperoxide resistance transcriptional regulator 0.41 PfGW456L13_4094 23S rRNA (guanine-N-2-) -methyltransferase rlmL EC 2.1.1.-) low > 87
Pseudomonas fluorescens FW300-N2E2 0.40 Pf6N2E2_2443 Organic hydroperoxide resistance transcriptional regulator 0.40 Pf6N2E2_2346 23S rRNA (guanine-N-2-) -methyltransferase rlmL EC 2.1.1.-) low > 103
Erwinia amylovora T8 0.40 OLJFJH_04900 MarR family transcriptional regulator 0.55 OLJFJH_15975 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 58
Pseudomonas lactucae CFBP13502 0.40 GEMAOFIL_01847 hypothetical protein 0.42 GEMAOFIL_04331 Ribosomal RNA large subunit methyltransferase K/L low > 96
Erwinia tracheiphila HP pepo 2.2 0.40 IJEDHG_10055 MarR family transcriptional regulator 0.53 IJEDHG_20480 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.58 54
Dickeya dianthicola ME23 0.40 DZA65_RS19880 MarR family transcriptional regulator 0.56 DZA65_RS13375 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 75
Pseudomonas fluorescens FW300-N2C3 0.40 AO356_03075 MarR family transcriptional regulator 0.39 AO356_02605 50S rRNA methyltransferase low > 104
Dickeya dianthicola 67-19 0.40 HGI48_RS18745 MarR family transcriptional regulator 0.56 HGI48_RS12910 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 71
Pseudomonas protegens RBAN4 0.40 FABNJH_21915 Organic hydroperoxide resistance transcriptional regulator 0.42 FABNJH_09755 rlmL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL — —
Marinobacter adhaerens HP15 0.40 HP15_2792 transcriptional regulator MarR family protein 0.38 HP15_1379 RNA methylase low > 73
Enterobacter asburiae PDN3 0.39 EX28DRAFT_3564 Transcriptional regulators 0.55 EX28DRAFT_1995 Predicted N6-adenine-specific DNA methylase low > 76
Pseudomonas fluorescens SBW25 0.39 PFLU_RS08445 MarR family transcriptional regulator 0.41 PFLU_RS22545 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 109
Pseudomonas sp. SVBP6 0.39 COO64_RS06045 MarR family winged helix-turn-helix transcriptional regulator 0.42 COO64_RS05295 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 91
Pseudomonas fluorescens SBW25-INTG 0.39 PFLU_RS08445 MarR family transcriptional regulator 0.41 PFLU_RS22545 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 109
Pseudomonas orientalis W4I3 0.39 QF045_RS11215 MarR family transcriptional regulator 0.41 QF045_RS22735 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 93
Pseudomonas sp. FW215-L2 0.38 GFF3303 Organic hydroperoxide resistance transcriptional regulator 0.41 GFF1290 Ribosomal RNA large subunit methyltransferase K/L low > 111
Rhodanobacter denitrificans MT42 0.37 LRK55_RS15485 MarR family transcriptional regulator 0.40 LRK55_RS14315 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 63
Rhodanobacter denitrificans FW104-10B01 0.37 LRK54_RS15735 MarR family transcriptional regulator 0.40 LRK54_RS14600 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 59
Alteromonas macleodii MIT1002 0.35 MIT1002_00888 Organic hydroperoxide resistance transcriptional regulator 0.44 MIT1002_02036 Ribosomal RNA large subunit methyltransferase K/L low > 70

Not shown: 31 genomes with orthologs for CSW01_19135 only; 26 genomes with orthologs for CSW01_07480 only