Conservation of cofitness between CSW01_10460 and CSW01_06045 in Vibrio cholerae E7946 ATCC 55056

61 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_10460 Nif3-like dinuclear metal center hexameric protein 1.0 CSW01_06045 lipoprotein 0.43 18
Serratia liquefaciens MT49 0.58 IAI46_06210 type 2 GTP cyclohydrolase I 0.29 IAI46_00110 OmpA family lipoprotein low > 87
Erwinia amylovora T8 0.58 OLJFJH_17010 UPF0135 protein ybgI 0.31 OLJFJH_05070 OmpA family lipoprotein low > 58
Pantoea agglomerans CFBP13505 P0401 0.58 PagCFBP13505_RS03495 Nif3-like dinuclear metal center hexameric protein 0.33 PagCFBP13505_RS19200 OmpA family lipoprotein low > 74
Pantoea sp. MT58 0.57 IAI47_13810 type 2 GTP cyclohydrolase I 0.33 IAI47_00140 OmpA family lipoprotein low > 76
Rahnella sp. WP5 0.57 EX31_RS23375 type 2 GTP cyclohydrolase I 0.27 EX31_RS05890 OmpA family lipoprotein low > 89
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.55 GFF4615 FIG137478: Hypothetical protein YbgI 0.32 GFF459 Outer membrane protein A precursor low > 78
Shewanella loihica PV-4 0.55 Shew_1572 hypothetical protein (RefSeq) 0.26 Shew_0908 OmpA/MotB domain-containing protein (RefSeq) — —
Escherichia coli ECRC99 0.55 KEDOAH_20955 ybgI radiation resistance protein YbgI 0.32 KEDOAH_12125 yiaD OmpA family lipoprotein — —
Escherichia coli ECRC100 0.55 OKFHMN_07010 ybgI radiation resistance protein YbgI 0.32 OKFHMN_16025 yiaD OmpA family lipoprotein low > 79
Escherichia coli ECRC98 0.55 JDDGAC_10665 ybgI radiation resistance protein YbgI 0.32 JDDGAC_19655 yiaD OmpA family lipoprotein low > 87
Escherichia coli Nissle 1917 0.55 ECOLIN_RS03800 radiation resistance protein YbgI 0.32 ECOLIN_RS20325 OmpA family lipoprotein low > 55
Escherichia coli HS(pFamp)R (ATCC 700891) 0.55 OHPLBJKB_03007 GTP cyclohydrolase 1 type 2 0.32 OHPLBJKB_00154 putative lipoprotein YiaD low > 74
Escherichia coli ECRC62 0.55 BNILDI_21390 ybgI radiation resistance protein YbgI 0.32 BNILDI_03575 yiaD OmpA family lipoprotein low > 75
Escherichia coli ECRC102 0.55 NIAGMN_05065 ybgI radiation resistance protein YbgI 0.32 NIAGMN_13785 yiaD OmpA family lipoprotein low > 80
Escherichia fergusonii Becca 0.55 EFB2_03393 GTP cyclohydrolase 1 type 2 0.33 EFB2_00255 putative lipoprotein YiaD low > 86
Escherichia coli ECRC101 0.55 MCAODC_26230 ybgI radiation resistance protein YbgI 0.32 MCAODC_06540 yiaD OmpA family lipoprotein low > 87
Escherichia coli ECOR38 0.55 HEPCGN_01200 ybgI radiation resistance protein YbgI 0.32 HEPCGN_14915 yiaD OmpA family lipoprotein low > 88
Escherichia coli ECOR27 0.55 NOLOHH_23395 ybgI radiation resistance protein YbgI 0.32 NOLOHH_07970 yiaD OmpA family lipoprotein low > 76
Escherichia coli BW25113 0.55 b0710 ybgI conserved metal-binding protein (NCBI) 0.32 b3552 yiaD predicted outer membrane lipoprotien (NCBI) low > 76
Enterobacter sp. TBS_079 0.54 MPMX20_01344 GTP cyclohydrolase 1 type 2 0.32 MPMX20_00182 putative lipoprotein YiaD low > 85
Escherichia coli BL21 0.54 ECD_00670 NIF3 family metal-binding protein 0.34 ECD_03402 multicopy suppressor of bamB; outer membrane lipoprotein low > 61
Shewanella amazonensis SB2B 0.54 Sama_2050 hypothetical protein (RefSeq) 0.27 Sama_3096 OmpA family protein (RefSeq) low > 62
Enterobacter asburiae PDN3 0.54 EX28DRAFT_2277 dinuclear metal center protein, YbgI/SA1388 family 0.31 EX28DRAFT_3812 Outer membrane protein and related peptidoglycan-associated (lipo)proteins low > 76
Klebsiella pneumoniae MKP103 0.53 KDGMDA_16665 type 2 GTP cyclohydrolase I 0.33 KDGMDA_07665 OmpA family lipoprotein low > 95
Shewanella sp. ANA-3 0.53 Shewana3_1758 hypothetical protein (RefSeq) 0.27 Shewana3_0665 OmpA/MotB domain-containing protein (RefSeq) low > 73
Klebsiella michiganensis M5al 0.53 BWI76_RS08345 Nif3-like dinuclear metal center protein 0.33 BWI76_RS26935 OmpA family lipoprotein low > 92
Shewanella oneidensis MR-1 0.53 SO2621 conserved hypothetical protein TIGR00486 (NCBI ptt file) 0.28 SO3969 OmpA family protein (NCBI ptt file) low > 76
Alteromonas macleodii MIT1002 0.51 MIT1002_01972 metal-binding protein 0.32 MIT1002_04106 Inner membrane lipoprotein YiaD precursor low > 70
Pseudomonas lactucae CFBP13502 0.51 GEMAOFIL_00948 GTP cyclohydrolase 1 type 2 0.24 GEMAOFIL_01116 putative lipoprotein YiaD low > 96
Pseudomonas fluorescens FW300-N2E2 0.51 Pf6N2E2_5256 FIG137478: Hypothetical protein YbgI 0.25 Pf6N2E2_5327 Outer membrane protein assembly factor YaeT precursor low > 103
Pseudomonas sp. SVBP6 0.51 COO64_RS11720 Nif3-like dinuclear metal center hexameric protein 0.23 COO64_RS03450 OmpA family protein low > 93
Pseudomonas simiae WCS417 0.50 PS417_03710 metal-binding protein 0.23 PS417_04565 cell envelope biogenesis protein OmpA low > 88
Pseudomonas syringae pv. syringae B728a ΔmexB 0.50 Psyr_4129 Protein of unknown function DUF34 0.22 Psyr_1005 OmpA/MotB low > 86
Pseudomonas putida KT2440 0.50 PP_1302 putative metal-binding hydrolase-oxidase enzyme 0.22 PP_0773 OmpA/MotB domain-containing protein low > 96
Pseudomonas sp. DMC3 0.50 GFF1847 GTP cyclohydrolase 1 type 2 0.25 GFF4447 putative lipoprotein YiaD low > 89
Pseudomonas segetis P6 0.50 ACVTMO_RS19035 Nif3-like dinuclear metal center hexameric protein 0.27 ACVTMO_RS18275 OmpA family protein low > 75
Pseudomonas syringae pv. syringae B728a 0.50 Psyr_4129 Protein of unknown function DUF34 0.22 Psyr_1005 OmpA/MotB low > 86
Pseudomonas sp. BP01 0.50 JOY50_RS15280 Nif3-like dinuclear metal center hexameric protein 0.22 JOY50_RS19390 OmpA family protein low > 84
Pseudomonas fluorescens SBW25 0.50 PFLU_RS03760 Nif3-like dinuclear metal center hexameric protein 0.24 PFLU_RS04630 OmpA family lipoprotein low > 109
Pseudomonas fluorescens SBW25-INTG 0.50 PFLU_RS03760 Nif3-like dinuclear metal center hexameric protein 0.24 PFLU_RS04630 OmpA family lipoprotein low > 109
Pseudomonas fluorescens FW300-N2C3 0.50 AO356_16660 metal-binding protein 0.25 AO356_17015 cell envelope biogenesis protein OmpA low > 104
Pseudomonas stutzeri RCH2 0.50 Psest_3295 dinuclear metal center protein, YbgI/SA1388 family 0.31 Psest_3218 Outer membrane protein and related peptidoglycan-associated (lipo)proteins low > 67
Pseudomonas fluorescens FW300-N2E3 0.50 AO353_05085 metal-binding protein 0.24 AO353_15165 cell envelope biogenesis protein OmpA low > 101
Pseudomonas sp. RS175 0.50 PFR28_00192 GTP cyclohydrolase 1 type 2 0.25 PFR28_00255 putative lipoprotein YiaD 0.26 10
Pseudomonas aeruginosa PA14 0.50 IKLFDK_01865 Nif3-like dinuclear metal center hexameric protein 0.23 IKLFDK_03660 cell envelope biogenesis protein OmpA low > 98
Pseudomonas aeruginosa PUPa3 0.50 DQ20_RS56710 Nif3-like dinuclear metal center hexameric protein 0.23 DQ20_RS44495 OmpA family protein low > 101
Pseudomonas aeruginosa MRSN321 0.50 DY961_RS24250 Nif3-like dinuclear metal center hexameric protein 0.23 DY961_RS08330 OmpA family protein low > 100
Pseudomonas orientalis W4I3 0.50 QF045_RS06690 Nif3-like dinuclear metal center hexameric protein 0.24 QF045_RS07555 OmpA family protein low > 93
Pseudomonas sp. S08-1 0.49 OH686_08455 GTP cyclohydrolase 1 type 2-related YbgI 0.24 OH686_06290 Outer membrane porin, OmpA family low > 80
Pseudomonas fluorescens GW456-L13 0.49 PfGW456L13_4997 FIG137478: Hypothetical protein YbgI 0.24 PfGW456L13_1624 Outer membrane protein assembly factor YaeT precursor low > 87
Ralstonia sp. UNC404CL21Col 0.47 ABZR87_RS02395 Nif3-like dinuclear metal center hexameric protein 0.21 ABZR87_RS16255 OmpA family protein low > 80
Marinobacter adhaerens HP15 0.47 HP15_2426 NGG1p interacting factor 3, NIF3 0.34 HP15_2555 OmpA/MotB domain protein low > 73
Ralstonia solanacearum IBSBF1503 0.46 RALBFv3_RS06740 Nif3-like dinuclear metal center hexameric protein 0.20 RALBFv3_RS04400 OmpA family protein low > 76
Ralstonia solanacearum UW163 0.46 UW163_RS06875 Nif3-like dinuclear metal center hexameric protein 0.20 UW163_RS09270 OmpA family protein — —
Ralstonia solanacearum PSI07 0.46 RPSI07_RS10495 Nif3-like dinuclear metal center hexameric protein 0.20 RPSI07_RS12970 OmpA family protein low > 81
Herbaspirillum seropedicae SmR1 0.45 HSERO_RS20255 metal-binding protein 0.21 HSERO_RS21940 membrane protein low > 78
Acinetobacter radioresistens SK82 0.45 MPMX26_00997 GTP cyclohydrolase 1 type 2 0.24 MPMX26_02417 putative lipoprotein YiaD low > 36
Acinetobacter baumannii LAC-4 0.44 RR41_RS05695 Nif3-like dinuclear metal center hexameric protein 0.29 RR41_RS14865 OmpA family protein — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.41 GFF1298 FIG137478: Hypothetical protein YbgI 0.21 GFF286 Outer membrane lipoprotein omp16 precursor — —
Variovorax sp. SCN45 0.39 GFF5367 GTP cyclohydrolase 1 type 2 homolog YbgI 0.19 GFF5449 Probable lipoprotein YiaD low > 127
Fusobacterium nucleatum SB010 0.13 HUW76_03660 Nif3-like dinuclear metal center hexameric protein 0.30 HUW76_03925 OmpA family protein low > 35

Not shown: 17 genomes with orthologs for CSW01_10460 only; 19 genomes with orthologs for CSW01_06045 only