Conservation of cofitness between CSW01_17180 and CSW01_03065 in Vibrio cholerae E7946 ATCC 55056

62 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_17180 peptide ABC transporter permease 1.0 CSW01_03065 ClpXP protease specificity-enhancing factor 0.41 20
Pectobacterium carotovorum WPP14 0.72 HER17_RS12925 microcin C ABC transporter permease YejB 0.56 HER17_RS19930 ClpXP protease specificity-enhancing factor low > 75
Dickeya dianthicola 67-19 0.72 HGI48_RS09225 microcin C ABC transporter permease YejB 0.58 HGI48_RS01550 ClpXP protease specificity-enhancing factor low > 71
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.72 GFF3758 Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) 0.57 GFF2967 ClpXP protease specificity-enhancing factor / Stringent starvation protein B low > 78
Escherichia coli ECRC62 0.72 BNILDI_13880 yejB Inner membrane ABC transporter permease protein YejB 0.58 BNILDI_01900 sspB ClpXP protease specificity-enhancing factor low > 75
Escherichia coli ECRC99 0.72 KEDOAH_04800 yejB Inner membrane ABC transporter permease protein YejB 0.58 KEDOAH_10315 sspB ClpXP protease specificity-enhancing factor — —
Escherichia coli ECOR27 0.72 NOLOHH_14960 yejB Inner membrane ABC transporter permease protein YejB 0.58 NOLOHH_09635 sspB ClpXP protease specificity-enhancing factor low > 76
Escherichia coli ECRC102 0.72 NIAGMN_21150 yejB Inner membrane ABC transporter permease protein YejB 0.58 NIAGMN_15595 sspB ClpXP protease specificity-enhancing factor low > 80
Escherichia coli BW25113 0.72 b2178 yejB predicted oligopeptide transporter subunit (NCBI) 0.58 b3228 sspB ClpXP protease specificity-enhancing factor (NCBI) low > 76
Escherichia coli BL21 0.72 ECD_02108 microcin C ABC transporter permease 0.58 ECD_03088 ClpXP protease specificity enhancing factor low > 61
Escherichia coli ECOR38 0.72 HEPCGN_22650 yejB Inner membrane ABC transporter permease protein YejB 0.58 HEPCGN_16710 sspB ClpXP protease specificity-enhancing factor low > 88
Escherichia coli HS(pFamp)R (ATCC 700891) 0.72 OHPLBJKB_01531 Inner membrane ABC transporter permease protein YejB 0.58 OHPLBJKB_00476 Stringent starvation protein B low > 74
Escherichia coli ECRC100 0.72 OKFHMN_23385 yejB Inner membrane ABC transporter permease protein YejB 0.58 OKFHMN_17835 sspB ClpXP protease specificity-enhancing factor low > 79
Serratia liquefaciens MT49 0.72 IAI46_17320 microcin C ABC transporter permease YejB 0.57 IAI46_22360 ClpXP protease specificity-enhancing factor low > 87
Escherichia fergusonii Becca 0.72 EFB2_01678 Inner membrane ABC transporter permease protein YejB 0.58 EFB2_00602 Stringent starvation protein B low > 86
Escherichia coli ECRC101 0.72 MCAODC_14435 yejB Inner membrane ABC transporter permease protein YejB 0.58 MCAODC_08355 sspB ClpXP protease specificity-enhancing factor 0.26 75
Escherichia coli ECRC98 0.72 JDDGAC_27345 yejB Inner membrane ABC transporter permease protein YejB 0.58 JDDGAC_21460 sspB ClpXP protease specificity-enhancing factor low > 87
Escherichia coli Nissle 1917 0.72 ECOLIN_RS12735 microcin C ABC transporter permease YejB 0.58 ECOLIN_RS18515 ClpXP protease specificity-enhancing factor — —
Dickeya dadantii 3937 0.70 DDA3937_RS09185 microcin C ABC transporter permease YejB 0.57 DDA3937_RS01650 ClpXP protease specificity-enhancing factor low > 74
Dickeya dianthicola ME23 0.70 DZA65_RS09530 microcin C ABC transporter permease YejB 0.58 DZA65_RS01620 ClpXP protease specificity-enhancing factor low > 75
Klebsiella pneumoniae MKP103 0.70 KDGMDA_26725 Inner membrane ABC transporter permease protein YejB 0.58 KDGMDA_06160 ClpXP protease specificity-enhancing factor low > 95
Erwinia amylovora T8 0.70 OLJFJH_11735 microcin ABC transporter permease 0.54 OLJFJH_07020 ClpXP protease specificity-enhancing factor low > 58
Rahnella sp. WP5 0.70 EX31_RS19135 microcin C ABC transporter permease YejB 0.58 EX31_RS12505 ClpXP protease specificity-enhancing factor low > 89
Enterobacter sp. TBS_079 0.69 MPMX20_03144 Inner membrane ABC transporter permease protein YejB 0.57 MPMX20_04132 Stringent starvation protein B low > 85
Enterobacter asburiae PDN3 0.69 EX28DRAFT_0383 ABC-type uncharacterized transport system, permease component 0.57 EX28DRAFT_3277 Stringent starvation protein B low > 76
Erwinia tracheiphila SCR3 0.68 LU632_RS17570 microcin C ABC transporter permease YejB 0.58 LU632_RS21325 sspB ClpXP protease specificity-enhancing factor low > 73
Erwinia tracheiphila HP pepo 2.2 0.68 IJEDHG_16060 microcin ABC transporter permease 0.58 IJEDHG_13695 sspB ClpXP protease specificity-enhancing factor low > 61
Marinobacter adhaerens HP15 0.68 HP15_1808 peptide ABC transporter, permease protein 0.42 HP15_549 stringent starvation protein B low > 73
Pseudomonas lactucae CFBP13502 0.68 GEMAOFIL_02685 Inner membrane ABC transporter permease protein YejB 0.40 GEMAOFIL_01040 Stringent starvation protein B low > 96
Pseudomonas segetis P6 0.68 MPMX49_02814 Inner membrane ABC transporter permease protein YejB 0.41 MPMX49_03824 Stringent starvation protein B low > 75
Pantoea sp. MT58 0.68 IAI47_06610 microcin C ABC transporter permease YejB 0.56 IAI47_17230 ClpXP protease specificity-enhancing factor low > 76
Pseudomonas sp. BP01 0.68 JOY50_RS07110 microcin C ABC transporter permease YejB 0.39 JOY50_RS15195 ClpXP protease specificity-enhancing factor low > 84
Pseudomonas sp. RS175 0.68 PFR28_01548 Inner membrane ABC transporter permease protein YejB 0.40 PFR28_03602 Stringent starvation protein B low > 88
Pseudomonas putida KT2440 0.67 PP_4148 putative inner membrane ABC transporter permease protein 0.40 PP_1321 ClpXP protease specificity-enhancing factor low > 96
Pseudomonas fluorescens FW300-N2C3 0.67 AO356_24460 microcin ABC transporter permease 0.39 AO356_17085 peptidase low > 104
Klebsiella michiganensis M5al 0.67 BWI76_RS19785 microcin C ABC transporter permease YejB 0.57 BWI76_RS25330 stringent starvation protein B — —
Pseudomonas fluorescens SBW25-INTG 0.67 PFLU_RS12890 microcin C ABC transporter permease YejB 0.39 PFLU_RS04215 ClpXP protease specificity-enhancing factor low > 109
Pseudomonas fluorescens SBW25 0.67 PFLU_RS12890 microcin C ABC transporter permease YejB 0.39 PFLU_RS04215 ClpXP protease specificity-enhancing factor low > 109
Pseudomonas fluorescens FW300-N2E2 0.67 Pf6N2E2_583 Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) 0.39 Pf6N2E2_5341 Stringent starvation protein B low > 103
Pseudomonas fluorescens FW300-N1B4 0.67 Pf1N1B4_4592 Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) 0.37 Pf1N1B4_958 Stringent starvation protein B low > 87
Pseudomonas fluorescens FW300-N2E3 0.67 AO353_23470 microcin ABC transporter permease 0.38 AO353_15265 peptidase low > 101
Pseudomonas orientalis W4I3 0.67 QF045_RS14735 microcin C ABC transporter permease YejB 0.42 QF045_RS07175 ClpXP protease specificity-enhancing factor low > 93
Pantoea agglomerans CFBP13505 P0401 0.67 PagCFBP13505_RS00695 microcin C ABC transporter permease YejB 0.56 PagCFBP13505_RS09395 ClpXP protease specificity-enhancing factor low > 74
Pseudomonas simiae WCS417 0.67 PS417_12200 microcin ABC transporter permease 0.40 PS417_04175 peptidase low > 88
Pseudomonas syringae pv. syringae B728a ΔmexB 0.67 Psyr_1757 Binding-protein-dependent transport systems inner membrane component 0.38 Psyr_4117 Stringent starvation protein B low > 86
Pseudomonas syringae pv. syringae B728a 0.67 Psyr_1757 Binding-protein-dependent transport systems inner membrane component 0.38 Psyr_4117 Stringent starvation protein B low > 86
Pseudomonas fluorescens GW456-L13 0.67 PfGW456L13_3344 Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) 0.37 PfGW456L13_1638 Stringent starvation protein B low > 87
Pseudomonas sp. DMC3 0.67 GFF1018 Inner membrane ABC transporter permease protein YejB 0.38 GFF4433 Stringent starvation protein B low > 89
Pseudomonas aeruginosa PUPa3 0.65 DQ20_RS54855 microcin C ABC transporter permease YejB 0.39 DQ20_RS56800 ClpXP protease specificity-enhancing factor low > 101
Pseudomonas aeruginosa MRSN321 0.65 DY961_RS20775 microcin C ABC transporter permease YejB 0.39 DY961_RS24340 ClpXP protease specificity-enhancing factor low > 100
Pseudomonas sp. SVBP6 0.65 COO64_RS19230 microcin C ABC transporter permease YejB 0.39 COO64_RS11815 ClpXP protease specificity-enhancing factor low > 93
Pseudomonas stutzeri RCH2 0.65 Psest_2066 ABC-type uncharacterized transport system, permease component 0.42 Psest_3275 Stringent starvation protein B low > 67
Pseudomonas aeruginosa PA14 0.65 IKLFDK_08795 microcin ABC transporter permease 0.39 IKLFDK_01955 ClpXP protease specificity-enhancing factor low > 98
Pseudomonas sp. S08-1 0.63 OH686_03605 ABC transporter premease protein 0.44 OH686_08370 Stringent starvation protein B low > 80
Herbaspirillum seropedicae SmR1 0.55 HSERO_RS17140 ABC transporter permease 0.30 HSERO_RS20225 starvation protein B — —
Acinetobacter baumannii LAC-4 0.54 RR41_RS09320 microcin C ABC transporter permease YejB 0.42 RR41_RS02560 ClpXP protease specificity-enhancing factor low > 55
Ralstonia solanacearum GMI1000 0.54 RS_RS05855 microcin C ABC transporter permease YejB 0.29 RS_RS14655 ClpXP protease specificity-enhancing factor low > 80
Ralstonia solanacearum IBSBF1503 0.53 RALBFv3_RS15040 microcin C ABC transporter permease YejB 0.30 RALBFv3_RS06710 ClpXP protease specificity-enhancing factor low > 76
Ralstonia solanacearum UW163 0.53 UW163_RS12510 microcin C ABC transporter permease YejB 0.30 UW163_RS06905 ClpXP protease specificity-enhancing factor — —
Cupriavidus basilensis FW507-4G11 0.53 RR42_RS13380 microcin ABC transporter permease 0.29 RR42_RS18805 peptidase low > 128
Paraburkholderia sabiae LMG 24235 0.52 QEN71_RS06175 ABC transporter permease subunit 0.31 QEN71_RS27765 ClpXP protease specificity-enhancing factor low > 153
Ralstonia sp. UNC404CL21Col 0.50 ABZR87_RS10685 microcin C ABC transporter permease YejB 0.28 ABZR87_RS02365 ClpXP protease specificity-enhancing factor low > 80
Ralstonia solanacearum PSI07 0.50 RPSI07_RS18335 microcin C ABC transporter permease YejB 0.28 RPSI07_RS10525 ClpXP protease specificity-enhancing factor low > 81

Not shown: 22 genomes with orthologs for CSW01_17180 only; 13 genomes with orthologs for CSW01_03065 only