| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Vibrio cholerae E7946 ATCC 55056 | 1.0 | CSW01_11300 | | copper-exporting P-type ATPase A | 1.0 | CSW01_02835 | | RNA polymerase sigma factor RpoS | 0.66 | 8 |
| Pantoea sp. MT58 | 0.45 | IAI47_14400 | | copper-exporting P-type ATPase CopA | 0.71 | IAI47_04235 | | RNA polymerase sigma factor RpoS | low | > 76 |
| Serratia liquefaciens MT49 | 0.44 | IAI46_05310 | | copper-exporting P-type ATPase CopA | 0.70 | IAI46_03790 | | RNA polymerase sigma factor RpoS | low | > 87 |
| Pectobacterium carotovorum WPP14 | 0.44 | HER17_RS15625 | | copper-exporting P-type ATPase CopA | 0.68 | HER17_RS04350 | | RNA polymerase sigma factor RpoS | low | > 75 |
| Enterobacter asburiae PDN3 | 0.44 | EX28DRAFT_2474 | | copper-(or silver)-translocating P-type ATPase | 0.70 | EX28DRAFT_2837 | | RNA polymerase, sigma 38 subunit, RpoS | low | > 76 |
| Klebsiella michiganensis M5al | 0.43 | BWI76_RS06905 | | Cu+ exporting ATPase | 0.70 | BWI76_RS22645 | | RNA polymerase sigma factor RpoS | low | > 92 |
| Klebsiella pneumoniae MKP103 | 0.43 | KDGMDA_14945 | | copper-exporting P-type ATPase CopA | 0.70 | KDGMDA_03220 | | RNA polymerase sigma factor RpoS | low | > 95 |
| Enterobacter sp. TBS_079 | 0.43 | MPMX20_01084 | | Copper-exporting P-type ATPase | 0.70 | MPMX20_03627 | | RNA polymerase sigma factor RpoS | low | > 85 |
| Dickeya dianthicola ME23 | 0.42 | DZA65_RS06225 | | copper-exporting P-type ATPase CopA | 0.68 | DZA65_RS18020 | | RNA polymerase sigma factor RpoS | low | > 75 |
| Escherichia coli ECOR38 | 0.42 | HEPCGN_06710 | copA | copper-exporting P-type ATPase CopA | 0.70 | HEPCGN_19675 | rpoS | RNA polymerase sigma factor RpoS | low | > 88 |
| Escherichia fergusonii Becca | 0.42 | EFB2_03575 | | Copper-exporting P-type ATPase | 0.70 | EFB2_01169 | | RNA polymerase sigma factor RpoS | low | > 86 |
| Escherichia coli ECRC101 | 0.42 | MCAODC_27295 | copA | copper-exporting P-type ATPase CopA | 0.70 | MCAODC_11020 | rpoS | RNA polymerase sigma factor RpoS | low | > 87 |
| Dickeya dianthicola 67-19 | 0.42 | HGI48_RS05890 | | copper-exporting P-type ATPase CopA | 0.68 | HGI48_RS16945 | | RNA polymerase sigma factor RpoS | low | > 71 |
| Escherichia coli ECRC98 | 0.42 | JDDGAC_11720 | copA | copper-exporting P-type ATPase CopA | 0.70 | JDDGAC_24160 | rpoS | RNA polymerase sigma factor RpoS | 0.56 | 2 |
| Escherichia coli ECRC102 | 0.42 | NIAGMN_06125 | copA | copper-exporting P-type ATPase CopA | 0.70 | NIAGMN_18265 | rpoS | RNA polymerase sigma factor RpoS | low | > 80 |
| Escherichia coli ECRC100 | 0.42 | OKFHMN_08075 | copA | copper-exporting P-type ATPase CopA | 0.70 | OKFHMN_20495 | rpoS | RNA polymerase sigma factor RpoS | low | > 79 |
| Escherichia coli ECOR27 | 0.42 | NOLOHH_01015 | copA | copper-exporting P-type ATPase CopA | 0.70 | NOLOHH_12310 | rpoS | RNA polymerase sigma factor RpoS | low | > 76 |
| Dickeya dadantii 3937 | 0.42 | DDA3937_RS05845 | | copper-exporting P-type ATPase CopA | 0.69 | DDA3937_RS16875 | | RNA polymerase sigma factor RpoS | — | — |
| Escherichia coli ECRC62 | 0.42 | BNILDI_22435 | copA | copper-exporting P-type ATPase CopA | 0.70 | BNILDI_10860 | rpoS | RNA polymerase sigma factor RpoS | low | > 75 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.42 | OHPLBJKB_03190 | | Copper-exporting P-type ATPase | 0.70 | OHPLBJKB_00992 | | RNA polymerase sigma factor RpoS | low | > 74 |
| Escherichia coli BL21 | 0.42 | ECD_00435 | | copper transporter | 0.70 | ECD_02591 | | RNA polymerase, sigma S (sigma 38) factor | low | > 61 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.42 | GFF4404 | | Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5); Copper-translocating P-type ATPase (EC 3.6.3.4) | 0.70 | GFF4788 | | RNA polymerase sigma factor RpoS | low | > 78 |
| Escherichia coli BW25113 | 0.42 | b0484 | copA | copper transporter (NCBI) | 0.70 | b2741 | rpoS | RNA polymerase sigma factor (NCBI) | low | > 76 |
| Rahnella sp. WP5 | 0.42 | EX31_RS22575 | | copper-exporting P-type ATPase CopA | 0.70 | EX31_RS07825 | | RNA polymerase sigma factor RpoS | low | > 89 |
| Erwinia amylovora T8 | 0.41 | OLJFJH_17705 | | copper-exporting P-type ATPase CopA | 0.70 | OLJFJH_09380 | | RNA polymerase sigma factor RpoS | low | > 58 |
| Erwinia tracheiphila SCR3 | 0.41 | LU632_RS15300 | copA | copper-exporting P-type ATPase CopA | 0.69 | LU632_RS06480 | rpoS | RNA polymerase sigma factor RpoS | low | > 73 |
| Erwinia tracheiphila HP pepo 2.2 | 0.41 | IJEDHG_01110 | copA | copper-exporting P-type ATPase CopA | 0.69 | IJEDHG_17500 | rpoS | RNA polymerase sigma factor RpoS | low | > 61 |
| Marinobacter adhaerens HP15 | 0.40 | HP15_3546 | | copper-translocating P-type ATPase | 0.62 | HP15_1283 | | RNA polymerase, sigma 70 subunit, RpoD family | low | > 73 |
| Shewanella loihica PV-4 | 0.39 | Shew_3818 | | copper-translocating P-type ATPase (RefSeq) | 0.68 | Shew_1213 | | RpoD family RNA polymerase sigma factor (RefSeq) | low | > 60 |
| Shewanella oneidensis MR-1 | 0.39 | SO1689 | | cation transport ATPase, E1-E2 family (NCBI ptt file) | 0.66 | SO3432 | rpoS | RNA polymerase sigma-38 factor (NCBI ptt file) | low | > 76 |
| Shewanella sp. ANA-3 | 0.39 | Shewana3_2761 | | copper-translocating P-type ATPase (RefSeq) | 0.66 | Shewana3_1124 | | RNA polymerase, sigma 38 subunit, RpoS (RefSeq) | low | > 73 |
| Alteromonas macleodii MIT1002 | 0.38 | MIT1002_00284 | | Copper-exporting P-type ATPase A | 0.69 | MIT1002_00625 | | RNA polymerase sigma factor RpoS | low | > 70 |
| Pseudomonas segetis P6 | 0.30 | MPMX49_00060 | | Copper-transporting P-type ATPase | 0.62 | MPMX49_03428 | | RNA polymerase sigma factor RpoS | low | > 75 |
| Pseudomonas fluorescens FW300-N1B4 | 0.28 | Pf1N1B4_1262 | | Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5); Copper-translocating P-type ATPase (EC 3.6.3.4) | 0.62 | Pf1N1B4_3115 | | RNA polymerase sigma factor RpoS | low | > 87 |
| Pseudomonas fluorescens FW300-N2C3 | 0.28 | AO356_08065 | | copper-transporting ATPase | 0.62 | AO356_05885 | | RNA polymerase sigma factor RpoS | low | > 104 |
| Pseudomonas fluorescens FW300-N2E3 | 0.28 | AO353_06155 | | copper-transporting ATPase | 0.63 | AO353_16615 | | RNA polymerase sigma factor RpoS | low | > 101 |
| Pseudomonas fluorescens GW456-L13 | 0.28 | PfGW456L13_24 | | Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5); Copper-translocating P-type ATPase (EC 3.6.3.4) | 0.62 | PfGW456L13_4674 | | RNA polymerase sigma factor RpoS | low | > 87 |
| Pseudomonas syringae pv. syringae B728a | 0.28 | Psyr_0654 | | Copper-translocating P-type ATPase:Heavy metal translocating P-type ATPase | 0.62 | Psyr_1374 | | RNA polymerase, sigma 38 subunit, RpoS | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.28 | Psyr_0654 | | Copper-translocating P-type ATPase:Heavy metal translocating P-type ATPase | 0.62 | Psyr_1374 | | RNA polymerase, sigma 38 subunit, RpoS | low | > 86 |
| Pseudomonas sp. RS175 | 0.28 | PFR28_05244 | | Copper-exporting P-type ATPase | 0.62 | PFR28_00427 | | RNA polymerase sigma factor RpoS | low | > 88 |
| Pseudomonas aeruginosa MRSN321 | 0.28 | DY961_RS13265 | copA1;inference=COORDINATES | copper-translocating P-type ATPase CopA1 | 0.62 | DY961_RS14865 | rpoS;go_function=DNA | RNA polymerase sigma factor RpoS | low | > 100 |
| Pseudomonas aeruginosa PA14 | 0.28 | IKLFDK_20225 | | copper-translocating P-type ATPase CopA1 | 0.62 | IKLFDK_18495 | | RNA polymerase sigma factor RpoS | low | > 98 |
| Pseudomonas stutzeri RCH2 | 0.27 | Psest_0738 | | copper-(or silver)-translocating P-type ATPase | 0.61 | Psest_2806 | | RNA polymerase sigma factor RpoS | low | > 67 |
| Pseudomonas aeruginosa PUPa3 | 0.27 | DQ20_RS48575 | copA1;inference=COORDINATES | copper-translocating P-type ATPase CopA1 | 0.62 | DQ20_RS42260 | rpoS;go_function=DNA | RNA polymerase sigma factor RpoS | low | > 101 |
| Pseudomonas sp. SVBP6 | 0.27 | COO64_RS26340 | | heavy metal translocating P-type ATPase | 0.63 | COO64_RS19795 | rpoS | RNA polymerase sigma factor RpoS | low | > 93 |
| Pseudomonas simiae WCS417 | 0.27 | PS417_03160 | | metal ABC transporter ATPase | 0.62 | PS417_06365 | | RNA polymerase sigma factor | low | > 88 |
| Pseudomonas lactucae CFBP13502 | 0.27 | GEMAOFIL_00847 | | Copper-exporting P-type ATPase | 0.62 | GEMAOFIL_01443 | | RNA polymerase sigma factor RpoS | low | > 96 |
| Burkholderia phytofirmans PsJN | 0.27 | BPHYT_RS34125 | | heavy metal translocating P-type ATPase | 0.38 | BPHYT_RS09115 | | RNA polymerase sigma factor RpoS | low | > 109 |
| Pseudomonas orientalis W4I3 | 0.27 | QF045_RS06195 | | heavy metal translocating P-type ATPase | 0.62 | QF045_RS09210 | | RNA polymerase sigma factor RpoS | low | > 93 |
| Pseudomonas putida KT2440 | 0.27 | PP_0586 | | cadmium translocating P-type ATPase | 0.63 | PP_1623 | | RNA polymerase, sigma S (sigma 38) factor | low | > 96 |
| Paraburkholderia sabiae LMG 24235 | 0.27 | QEN71_RS17330 | | heavy metal translocating P-type ATPase | 0.38 | QEN71_RS22240 | | RNA polymerase sigma factor RpoS | low | > 153 |
| Pseudomonas sp. S08-1 | 0.27 | OH686_07395 | | copper-translocating P-type ATPase | 0.62 | OH686_18185 | | RNA polymerase sigma factor RpoS | low | > 80 |
| Pseudomonas fluorescens SBW25-INTG | 0.27 | PFLU_RS03240 | | copper-translocating P-type ATPase | 0.62 | PFLU_RS06430 | | RNA polymerase sigma factor RpoS | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.27 | PFLU_RS03240 | | copper-translocating P-type ATPase | 0.62 | PFLU_RS06430 | | RNA polymerase sigma factor RpoS | low | > 109 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.26 | H281DRAFT_03512 | | Cu+-exporting ATPase | 0.38 | H281DRAFT_00844 | | RNA polymerase, sigma 38 subunit, RpoS | — | — |
| Pseudomonas sp. BP01 | 0.26 | JOY50_RS23265 | | heavy metal translocating P-type ATPase | 0.63 | JOY50_RS23755 | rpoS | RNA polymerase sigma factor RpoS | low | > 84 |
| Paraburkholderia graminis OAS925 | 0.26 | ABIE53_004745 | | Cu+-exporting ATPase | 0.38 | ABIE53_002057 | | RNA polymerase nonessential primary-like sigma factor | low | > 113 |
| Herbaspirillum seropedicae SmR1 | 0.25 | HSERO_RS08020 | | heavy metal translocating P-type ATPase | 0.44 | HSERO_RS14830 | | RNA polymerase sigma factor RpoS | low | > 78 |
Not shown: 30 genomes with orthologs for CSW01_11300 only; 5 genomes with orthologs for CSW01_02835 only