Conservation of cofitness between CSW01_01980 and CSW01_02460 in Vibrio cholerae E7946 ATCC 55056

62 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_01980 transcriptional regulator Zur 1.0 CSW01_02460 type IV pili twitching motility protein PilT 0.86 6
Pectobacterium carotovorum WPP14 0.48 HER17_RS18780 zinc uptake transcriptional repressor Zur 0.48 HER17_RS03815 type IV pilus twitching motility protein PilT low > 75
Erwinia tracheiphila HP pepo 2.2 0.47 IJEDHG_08440 zur zinc uptake transcriptional repressor Zur 0.45 IJEDHG_03445 type IV pili twitching motility protein PilT low > 61
Pantoea agglomerans CFBP13505 P0401 0.47 PagCFBP13516_RS18110 zur zinc uptake transcriptional repressor Zur 0.43 PagCFBP13516_RS03835 type IV pilus twitching motility protein PilT low > 80
Dickeya dadantii 3937 0.46 DDA3937_RS02765 zinc uptake transcriptional repressor Zur 0.47 DDA3937_RS17295 type IV pilus twitching motility protein PilT low > 74
Rahnella sp. WP5 0.46 EX31_RS11860 zinc uptake transcriptional repressor Zur 0.44 EX31_RS02680 type IV pilus twitching motility protein PilT low > 89
Pantoea sp. MT58 0.46 IAI47_17875 zinc uptake transcriptional repressor Zur 0.44 IAI47_03600 type IV pilus twitching motility protein PilT low > 76
Enterobacter asburiae PDN3 0.46 EX28DRAFT_4266 Fe2+/Zn2+ uptake regulation proteins 0.45 EX28DRAFT_2988 pilus retraction protein PilT low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.45 OHPLBJKB_03997 Zinc uptake regulation protein 0.44 OHPLBJKB_00766 putative protein YggR low > 74
Escherichia coli BW25113 0.45 b4046 yjbK putative regulator (VIMSS) 0.45 b2950 yggR putative protein transport (VIMSS) low > 76
Dickeya dianthicola ME23 0.45 DZA65_RS02895 zinc uptake transcriptional repressor Zur 0.46 DZA65_RS18430 type IV pilus twitching motility protein PilT low > 75
Escherichia coli ECOR27 0.45 NOLOHH_05205 zur zinc uptake transcriptional repressor Zur 0.45 NOLOHH_11130 yggR Uncharacterized protein YggR low > 75
Erwinia amylovora T8 0.45 OLJFJH_03565 zinc uptake transcriptional repressor Zur 0.42 OLJFJH_08535 type IV pili twitching motility protein PilT low > 58
Dickeya dianthicola 67-19 0.45 HGI48_RS02740 zinc uptake transcriptional repressor Zur 0.46 HGI48_RS17340 type IV pilus twitching motility protein PilT low > 71
Escherichia coli ECRC62 0.45 BNILDI_06315 zur zinc uptake transcriptional repressor Zur 0.45 BNILDI_09710 yggR Uncharacterized protein YggR low > 75
Enterobacter sp. TBS_079 0.45 MPMX20_00262 Zinc uptake regulation protein 0.47 MPMX20_03808 putative protein YggR low > 85
Escherichia coli BL21 0.45 ECD_03918 transcriptional repressor, Zn(II)-binding 0.45 ECD_02780 putative PilT family AAA+ ATPase low > 61
Escherichia coli ECOR38 0.45 HEPCGN_11570 zur zinc uptake transcriptional repressor Zur 0.45 HEPCGN_18565 yggR Uncharacterized protein YggR low > 88
Serratia liquefaciens MT49 0.45 IAI46_22990 zinc uptake transcriptional repressor Zur 0.48 IAI46_21405 type IV pilus twitching motility protein PilT low > 87
Escherichia coli ECRC99 0.45 KEDOAH_15110 zur zinc uptake transcriptional repressor Zur 0.45 KEDOAH_08880 yggR Uncharacterized protein YggR — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.45 GFF1416 Zinc uptake regulation protein ZUR 0.45 GFF3053 Twitching motility protein PilT low > 78
Escherichia coli ECRC98 0.45 JDDGAC_16675 zur zinc uptake transcriptional repressor Zur 0.45 JDDGAC_22890 yggR Uncharacterized protein YggR low > 87
Escherichia coli ECRC101 0.45 MCAODC_03550 zur zinc uptake transcriptional repressor Zur 0.45 MCAODC_09780 yggR Uncharacterized protein YggR low > 87
Escherichia coli ECRC100 0.45 OKFHMN_13050 zur zinc uptake transcriptional repressor Zur 0.45 OKFHMN_19260 yggR Uncharacterized protein YggR low > 79
Escherichia coli ECRC102 0.45 NIAGMN_10800 zur zinc uptake transcriptional repressor Zur 0.45 NIAGMN_17025 yggR Uncharacterized protein YggR low > 80
Escherichia fergusonii Becca 0.45 EFB2_04557 Zinc uptake regulation protein 0.45 EFB2_00952 putative protein YggR low > 86
Escherichia coli Nissle 1917 0.45 ECOLIN_RS23350 zinc uptake transcriptional repressor Zur 0.45 ECOLIN_RS16410 type IV pilus twitching motility protein PilT low > 55
Klebsiella michiganensis M5al 0.44 BWI76_RS01890 transcriptional regulator Zur 0.44 BWI76_RS24095 twitching motility protein PilT low > 92
Klebsiella pneumoniae MKP103 0.44 KDGMDA_10345 zinc uptake transcriptional repressor Zur 0.46 KDGMDA_04610 twitching motility protein PilT low > 94
Klebsiella pneumoniae MRSN742743 0.44 KFA93_RS21755 zur;go_function=DNA-binding zinc uptake transcriptional repressor Zur 0.46 KFA93_RS12155 type IV pilus twitching motility protein PilT low > 82
Alteromonas macleodii MIT1002 0.42 MIT1002_03799 Zinc uptake regulation protein 0.72 MIT1002_03060 Twitching mobility protein low > 70
Rhodanobacter denitrificans MT42 0.38 LRK55_RS01420 transcriptional repressor 0.69 LRK55_RS04025 type IV pilus twitching motility protein PilT low > 63
Rhodanobacter denitrificans FW104-10B01 0.38 LRK54_RS01640 transcriptional repressor 0.69 LRK54_RS04255 type IV pilus twitching motility protein PilT low > 59
Dyella japonica UNC79MFTsu3.2 0.37 ABZR86_RS07900 transcriptional repressor 0.71 ABZR86_RS10420 type IV pilus twitching motility protein PilT low > 74
Lysobacter sp. OAE881 0.37 ABIE51_RS06205 transcriptional repressor 0.69 ABIE51_RS16055 type IV pilus twitching motility protein PilT — —
Xanthomonas campestris pv. campestris strain 8004 0.36 Xcc-8004.1790.1 Zinc uptake regulation protein ZUR 0.70 Xcc-8004.1713.1 Twitching motility protein PilT low > 74
Pseudomonas sp. RS175 0.34 PFR28_04620 Zinc uptake regulation protein 0.69 PFR28_04241 Twitching mobility protein low > 88
Pseudomonas fluorescens FW300-N2E2 0.34 Pf6N2E2_4166 Zinc uptake regulation protein ZUR 0.69 Pf6N2E2_4602 Twitching motility protein PilT — —
Pseudomonas orientalis W4I3 0.33 QF045_RS03330 zinc uptake transcriptional repressor Zur 0.64 QF045_RS01120 type IV pilus twitching motility protein PilT low > 93
Pseudomonas fluorescens FW300-N2C3 0.33 AO356_11485 Fur family transcriptional regulator 0.69 AO356_13430 twitching motility protein PilT — —
Pseudomonas protegens RBAN4 0.33 FABNJH_00400 zur zinc uptake transcriptional repressor Zur 0.62 FABNJH_29420 pilT Twitching motility protein PilT — —
Pseudomonas sp. SVBP6 0.33 COO64_RS02455 zur zinc uptake transcriptional repressor Zur 0.54 COO64_RS13005 type IV pilus twitching motility protein PilT — —
Pseudomonas sp. BP01 0.33 JOY50_RS21130 zur zinc uptake transcriptional repressor Zur 0.50 JOY50_RS20915 type IV pilus twitching motility protein PilT low > 84
Pseudomonas fluorescens GW456-L13 0.33 PfGW456L13_598 Zinc uptake regulation protein ZUR 0.68 PfGW456L13_1012 Twitching motility protein PilT low > 87
Pseudomonas aeruginosa PA14 0.33 IKLFDK_25915 zinc uptake transcriptional repressor Zur 0.69 IKLFDK_23445 type IV pilus twitching motility protein PilT low > 98
Pseudomonas putida KT2440 0.33 PP_0119 putative zinc uptake regulation protein ZUR 0.50 PP_5093 twitching motility protein low > 96
Pseudomonas aeruginosa PUPa3 0.33 DQ20_RS58225 zur;inference=COORDINATES zinc uptake transcriptional repressor Zur 0.69 DQ20_RS37345 pilT;inference=COORDINATES type IV pilus twitching motility protein PilT low > 101
Pseudomonas aeruginosa MRSN321 0.33 DY961_RS25795 zur;inference=COORDINATES zinc uptake transcriptional repressor Zur 0.69 DY961_RS21955 pilT;inference=COORDINATES type IV pilus twitching motility protein PilT 0.47 99
Pseudomonas fluorescens FW300-N2E3 0.32 AO353_10910 Fur family transcriptional regulator 0.68 AO353_08155 twitching motility protein PilT — —
Pseudomonas fluorescens FW300-N1B4 0.32 Pf1N1B4_1871 Zinc uptake regulation protein ZUR 0.69 Pf1N1B4_2343 Twitching motility protein PilT low > 87
Pseudomonas sp. DMC3 0.32 GFF635 Zinc uptake regulation protein 0.69 GFF208 Twitching mobility protein low > 89
Pseudomonas sp. S08-1 0.32 OH686_12240 Zinc uptake regulation protein Zur 0.70 OH686_10970 Twitching motility protein PilT low > 80
Pseudomonas simiae WCS417 0.32 PS417_00385 Fur family transcriptional regulator 0.63 PS417_26720 twitching motility protein PilT low > 88
Pseudomonas segetis P6 0.32 ACVTMO_RS01595 Fur family transcriptional regulator 0.69 ACVTMO_RS03025 pilT type IV pilus twitching motility protein PilT — —
Pseudomonas fluorescens SBW25 0.32 PFLU_RS00375 transcriptional repressor 0.64 PFLU_RS28365 type IV pilus twitching motility protein PilT low > 109
Pseudomonas fluorescens SBW25-INTG 0.32 PFLU_RS00375 transcriptional repressor 0.64 PFLU_RS28365 type IV pilus twitching motility protein PilT — —
Pseudomonas lactucae CFBP13502 0.31 GEMAOFIL_00280 Zinc uptake regulation protein 0.65 GEMAOFIL_05481 Twitching mobility protein — —
Acinetobacter baumannii LAC-4 0.31 RR41_RS18180 transcriptional repressor 0.73 RR41_RS14800 type IV pilus twitching motility protein PilT low > 55
Pseudomonas syringae pv. syringae B728a ΔmexB 0.31 Psyr_0276 zinc uptake regulation protein, putative 0.67 Psyr_0478 pilus retraction ATPase PilT low > 86
Pseudomonas stutzeri RCH2 0.31 Psest_4308 Fe2+/Zn2+ uptake regulation proteins 0.69 Psest_0285 pilus retraction protein PilT — —
Pseudomonas syringae pv. syringae B728a 0.31 Psyr_0276 zinc uptake regulation protein, putative 0.67 Psyr_0478 pilus retraction ATPase PilT low > 86
Acinetobacter radioresistens SK82 0.31 MPMX26_00095 Zinc uptake regulation protein 0.72 MPMX26_02405 Twitching mobility protein low > 36
Marinobacter adhaerens HP15 0.30 HP15_3521 zinc uptake regulation protein 0.68 HP15_289 twitching motility protein PilT low > 73

Not shown: 14 genomes with orthologs for CSW01_01980 only; 26 genomes with orthologs for CSW01_02460 only