Conservation of cofitness between CSW01_01810 and CSW01_02210 in Vibrio cholerae E7946 ATCC 55056

54 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_01810 tRNA epoxyqueuosine(34) reductase QueG 1.0 CSW01_02210 DUF3971 domain-containing protein 0.77 5
Pantoea agglomerans CFBP13505 P0401 0.70 PagCFBP13505_RS11155 tRNA epoxyqueuosine(34) reductase QueG 0.21 PagCFBP13505_RS11055 AsmA2 domain-containing protein low > 74
Pantoea sp. MT58 0.70 IAI47_02560 tRNA epoxyqueuosine(34) reductase QueG 0.21 IAI47_02460 AsmA2 domain-containing protein YhdP low > 76
Dickeya dadantii 3937 0.69 DDA3937_RS18645 tRNA epoxyqueuosine(34) reductase QueG 0.20 DDA3937_RS01455 AsmA2 domain-containing protein YhdP low > 74
Pectobacterium carotovorum WPP14 0.68 HER17_RS02555 tRNA epoxyqueuosine(34) reductase QueG 0.21 HER17_RS20145 AsmA2 domain-containing protein YhdP low > 75
Dickeya dianthicola 67-19 0.68 HGI48_RS18575 tRNA epoxyqueuosine(34) reductase QueG 0.20 HGI48_RS01375 AsmA2 domain-containing protein YhdP low > 71
Dickeya dianthicola ME23 0.68 DZA65_RS19710 tRNA epoxyqueuosine(34) reductase QueG 0.20 DZA65_RS01435 AsmA2 domain-containing protein low > 75
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.67 GFF819 Epoxyqueuosine (oQ) reductase QueG 0.19 GFF2139 FIG005080: Possible exported protein low > 78
Escherichia coli ECOR27 0.67 NOLOHH_04550 queG tRNA epoxyqueuosine(34) reductase QueG 0.18 NOLOHH_09535 yhdP AsmA2 domain-containing protein YhdP low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.67 OHPLBJKB_03876 Epoxyqueuosine reductase 0.18 OHPLBJKB_00459 hypothetical protein low > 74
Escherichia coli ECRC62 0.67 BNILDI_06940 queG tRNA epoxyqueuosine(34) reductase QueG 0.18 BNILDI_01985 yhdP AsmA2 domain-containing protein YhdP low > 75
Escherichia coli BW25113 0.67 b4166 yjeS predicted Fe-S electron transport protein (NCBI) 0.18 b4472 yhdP conserved membrane protein, predicted transporter (NCBI) low > 76
Escherichia coli BL21 0.67 ECD_04033 epoxyqueuosine reductase, cobalamine-stimulated; queosine biosynthesis 0.17 ECD_03105 DUF3971-AsmA2 domains protein low > 61
Escherichia coli ECRC98 0.67 JDDGAC_15925 queG tRNA epoxyqueuosine(34) reductase QueG 0.17 JDDGAC_21375 yhdP AsmA2 domain-containing protein YhdP low > 87
Serratia liquefaciens MT49 0.67 IAI46_01595 tRNA epoxyqueuosine(34) reductase QueG 0.21 IAI46_22695 AsmA2 domain-containing protein YhdP low > 87
Escherichia coli ECRC99 0.67 KEDOAH_15870 queG tRNA epoxyqueuosine(34) reductase QueG 0.17 KEDOAH_10400 yhdP AsmA2 domain-containing protein YhdP — —
Escherichia coli ECRC100 0.67 OKFHMN_12285 queG tRNA epoxyqueuosine(34) reductase QueG 0.17 OKFHMN_17750 yhdP AsmA2 domain-containing protein YhdP 0.79 42
Escherichia coli ECOR38 0.67 HEPCGN_10515 queG tRNA epoxyqueuosine(34) reductase QueG 0.18 HEPCGN_16615 yhdP AsmA2 domain-containing protein YhdP low > 88
Escherichia coli ECRC102 0.67 NIAGMN_10135 queG tRNA epoxyqueuosine(34) reductase QueG 0.17 NIAGMN_15510 yhdP AsmA2 domain-containing protein YhdP 0.78 16
Escherichia coli Nissle 1917 0.67 ECOLIN_RS24200 tRNA epoxyqueuosine(34) reductase QueG 0.18 ECOLIN_RS18600 AsmA2 domain-containing protein YhdP low > 55
Escherichia fergusonii Becca 0.67 EFB2_04369 Epoxyqueuosine reductase 0.18 EFB2_00585 hypothetical protein low > 86
Escherichia coli ECRC101 0.67 MCAODC_02800 queG tRNA epoxyqueuosine(34) reductase QueG 0.17 MCAODC_08270 yhdP AsmA2 domain-containing protein YhdP 0.32 63
Klebsiella pneumoniae MKP103 0.66 KDGMDA_11005 tRNA epoxyqueuosine(34) reductase QueG 0.19 KDGMDA_06250 AsmA2 domain-containing protein low > 95
Rahnella sp. WP5 0.66 EX31_RS08850 tRNA epoxyqueuosine(34) reductase QueG 0.21 EX31_RS12260 AsmA2 domain-containing protein low > 89
Klebsiella michiganensis M5al 0.66 BWI76_RS02505 tRNA epoxyqueuosine(34) reductase QueG 0.19 BWI76_RS25475 TIGR02099 family protein low > 92
Enterobacter asburiae PDN3 0.66 EX28DRAFT_3363 epoxyqueuosine reductase 0.19 EX28DRAFT_3296 TIGR02099 family protein low > 76
Enterobacter sp. TBS_079 0.65 MPMX20_00447 Epoxyqueuosine reductase 0.19 MPMX20_04152 hypothetical protein low > 85
Shewanella sp. ANA-3 0.64 Shewana3_0745 putative iron-sulfur cluster binding protein (RefSeq) 0.19 Shewana3_3643 hypothetical protein (RefSeq) low > 73
Shewanella loihica PV-4 0.64 Shew_2979 putative iron-sulfur cluster binding protein (RefSeq) 0.18 Shew_0408 hypothetical protein (RefSeq) low > 60
Alteromonas macleodii MIT1002 0.63 MIT1002_03794 Epoxyqueuosine reductase 0.15 MIT1002_00225 putative protein involved in outer membrane biogenesis low > 70
Shewanella oneidensis MR-1 0.63 SO3861 iron-sulfur cluster-binding protein (NCBI ptt file) 0.19 SO4093 conserved hypothetical protein (NCBI ptt file) low > 76
Pseudomonas stutzeri RCH2 0.57 Psest_0677 iron-sulfur cluster binding protein, putative 0.08 Psest_3322 TIGR02099 family protein low > 67
Pseudomonas aeruginosa PUPa3 0.56 DQ20_RS51515 queG;go_function=4 tRNA epoxyqueuosine(34) reductase QueG 0.08 DQ20_RS56555 YhdP family protein low > 101
Pseudomonas syringae pv. syringae B728a 0.56 Psyr_0566 4Fe-4S cluster binding protein 0.08 Psyr_4158 conserved hypothetical protein low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.56 Psyr_0566 4Fe-4S cluster binding protein 0.08 Psyr_4158 conserved hypothetical protein low > 86
Pseudomonas aeruginosa PA14 0.55 IKLFDK_28790 tRNA epoxyqueuosine(34) reductase QueG 0.08 IKLFDK_01700 TIGR02099 family protein low > 98
Pseudomonas aeruginosa MRSN321 0.55 DY961_RS10540 queG;go_function=4 tRNA epoxyqueuosine(34) reductase QueG 0.08 DY961_RS24095 YhdP family protein low > 100
Pseudomonas sp. S08-1 0.55 OH686_09500 epoxyqueuosine reductase 0.07 OH686_08590 Possible exported protein — —
Pseudomonas sp. DMC3 0.55 GFF3214 Epoxyqueuosine reductase 0.08 GFF1814 hypothetical protein low > 89
Pseudomonas segetis P6 0.55 ACVTMO_RS20630 queG tRNA epoxyqueuosine(34) reductase QueG 0.07 ACVTMO_RS19165 YhdP family protein low > 75
Pseudomonas fluorescens FW300-N2E2 0.54 Pf6N2E2_3620 Epoxyqueuosine (oQ) reductase QueG 0.07 Pf6N2E2_3282 FIG005080: Possible exported protein low > 103
Pseudomonas simiae WCS417 0.54 PS417_02460 epoxyqueuosine reductase 0.08 PS417_04275 hypothetical protein low > 88
Pseudomonas sp. BP01 0.54 JOY50_RS17200 queG tRNA epoxyqueuosine(34) reductase QueG 0.07 JOY50_RS11060 YhdP family protein low > 84
Pseudomonas fluorescens GW456-L13 0.54 PfGW456L13_160 Epoxyqueuosine (oQ) reductase QueG 0.07 PfGW456L13_5028 FIG005080: Possible exported protein low > 87
Pseudomonas fluorescens FW300-N2C3 0.54 AO356_08685 epoxyqueuosine reductase 0.07 AO356_07105 hypothetical protein low > 104
Pseudomonas sp. SVBP6 0.54 COO64_RS17870 queG tRNA epoxyqueuosine(34) reductase QueG 0.09 COO64_RS04215 YhdP family protein low > 93
Pseudomonas fluorescens FW300-N1B4 0.54 Pf1N1B4_1418 Epoxyqueuosine (oQ) reductase QueG 0.08 Pf1N1B4_1094 FIG005080: Possible exported protein low > 87
Dyella japonica UNC79MFTsu3.2 0.54 ABZR86_RS00835 tRNA epoxyqueuosine(34) reductase QueG 0.09 ABZR86_RS21725 YhdP family protein low > 74
Herbaspirillum seropedicae SmR1 0.52 HSERO_RS04220 epoxyqueuosine reductase 0.08 HSERO_RS07145 hypothetical protein low > 78
Paraburkholderia bryophila 376MFSha3.1 0.50 H281DRAFT_04128 epoxyqueuosine reductase 0.06 H281DRAFT_04690 TIGR02099 family protein low > 103
Xanthomonas campestris pv. campestris strain 8004 0.50 Xcc-8004.2252.1 Epoxyqueuosine (oQ) reductase QueG 0.05 Xcc-8004.1881.1 FIG005080: Possible exported protein low > 74
Burkholderia phytofirmans PsJN 0.50 BPHYT_RS15960 iron-sulfur cluster binding protein 0.06 BPHYT_RS03550 hypothetical protein low > 109
Variovorax sp. OAS795 0.49 ABID97_RS20285 tRNA epoxyqueuosine(34) reductase QueG 0.08 ABID97_RS02005 YhdP family protein low > 91
Kangiella aquimarina DSM 16071 0.48 B158DRAFT_0486 iron-sulfur cluster binding protein, putative 0.08 B158DRAFT_2070 TIGR02099 family protein low > 40
Dechlorosoma suillum PS 0.47 Dsui_3502 iron-sulfur cluster binding protein, putative 0.08 Dsui_3403 TIGR02099 family protein — —

Not shown: 49 genomes with orthologs for CSW01_01810 only; 3 genomes with orthologs for CSW01_02210 only