Conservation of cofitness between CSW01_08115 and CSW01_02205 in Vibrio cholerae E7946 ATCC 55056

60 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_08115 ribosomal RNA large subunit methyltransferase F 1.0 CSW01_02205 ribonuclease E/G 0.59 13
Shewanella loihica PV-4 0.48 Shew_3741 putative SAM-dependent methyltransferase (RefSeq) 0.72 Shew_0407 ribonuclease G (RefSeq) low > 60
Pseudomonas sp. S08-1 0.46 OH686_17875 23S rRNA (adenine(1618)-N(6))-methyltransferase 0.56 OH686_08595 Ribonuclease G low > 80
Pontibacter actiniarum KMM 6156, DSM 19842 0.46 CA264_17175 23S rRNA (adenine(1618)-N(6))-methyltransferase 0.28 CA264_14980 ribonuclease E/G — —
Pseudomonas segetis P6 0.46 ACVTMO_RS17435 rlmF 23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF 0.55 ACVTMO_RS19170 rng ribonuclease G low > 75
Pseudomonas stutzeri RCH2 0.45 Psest_1227 Predicted SAM-dependent methyltransferase 0.56 Psest_3323 ribonuclease, Rne/Rng family low > 67
Pseudomonas fluorescens FW300-N2C3 0.45 AO356_17450 23S rRNA methyltransferase 0.57 AO356_07110 ribonuclease G low > 104
Pseudomonas aeruginosa PA14 0.45 IKLFDK_19780 23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF 0.57 IKLFDK_01695 ribonuclease G low > 98
Pseudomonas aeruginosa MRSN321 0.45 DY961_RS13675 rlmF;go_function=rRNA 23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF 0.57 DY961_RS24090 rng;go_function=RNA ribonuclease G low > 100
Pseudomonas aeruginosa PUPa3 0.45 DQ20_RS48955 rlmF;go_function=rRNA 23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF 0.57 DQ20_RS56550 rng;go_function=RNA ribonuclease G low > 101
Pedobacter sp. GW460-11-11-14-LB5 0.44 CA265_RS15555 23S rRNA (adenine(1618)-N(6))-methyltransferase 0.29 CA265_RS22665 ribonuclease E/G — —
Pseudomonas fluorescens FW300-N2E2 0.44 Pf6N2E2_5416 Ribosomal RNA large subunit methyltransferase F (EC 2.1.1.51) 0.57 Pf6N2E2_3283 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) low > 103
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.44 GFF702 Ribosomal RNA large subunit methyltransferase F (EC 2.1.1.51) 0.80 GFF2138 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) low > 78
Pseudomonas sp. DMC3 0.44 GFF1948 Ribosomal RNA large subunit methyltransferase F 0.57 GFF1813 Ribonuclease G low > 89
Pectobacterium carotovorum WPP14 0.44 HER17_RS17915 23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF 0.79 HER17_RS20150 ribonuclease G low > 75
Shewanella sp. ANA-3 0.44 Shewana3_0127 putative SAM-dependent methyltransferase (RefSeq) 0.74 Shewana3_3644 ribonuclease G (RefSeq) low > 73
Pseudomonas fluorescens FW300-N1B4 0.44 Pf1N1B4_903 Ribosomal RNA large subunit methyltransferase F (EC 2.1.1.51) 0.57 Pf1N1B4_1095 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) low > 87
Pseudomonas putida KT2440 0.43 PP_0976 Ribosomal RNA large subunit methyltransferase F 0.57 PP_0937 endoribonuclease G (RNAse G) low > 96
Pseudomonas sp. RS175 0.43 PFR28_03532 Ribosomal RNA large subunit methyltransferase F 0.57 PFR28_00158 Ribonuclease G low > 88
Pseudomonas fluorescens FW300-N2E3 0.43 AO353_04555 23S rRNA methyltransferase 0.56 AO353_05230 ribonuclease G low > 101
Pseudomonas sp. BP01 0.43 JOY50_RS11245 rlmF 23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF 0.56 JOY50_RS11055 rng ribonuclease G low > 84
Serratia liquefaciens MT49 0.43 IAI46_07510 23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF 0.80 IAI46_22700 ribonuclease G 0.62 45
Escherichia coli ECOR27 0.43 NOLOHH_22580 rlmF 23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF 0.80 NOLOHH_09530 rng ribonuclease G low > 76
Enterobacter asburiae PDN3 0.43 EX28DRAFT_2183 Predicted SAM-dependent methyltransferase 0.80 EX28DRAFT_3297 ribonuclease, Rne/Rng family low > 76
Escherichia coli BW25113 0.43 b0807 ybiN orf, hypothetical protein (VIMSS) 0.80 b3247 cafA bundles of cytoplasmic filaments (VIMSS) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.43 OHPLBJKB_02906 Ribosomal RNA large subunit methyltransferase F 0.80 OHPLBJKB_00458 Ribonuclease G low > 74
Escherichia coli ECRC62 0.43 BNILDI_20860 rlmF 23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF 0.80 BNILDI_01990 rng ribonuclease G low > 75
Escherichia coli ECOR38 0.43 HEPCGN_01810 rlmF 23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF 0.80 HEPCGN_16610 rng ribonuclease G low > 88
Escherichia coli BL21 0.43 ECD_00774 23S rRNA m(6)A1618 methyltransferase, SAM-dependent 0.80 ECD_03106 ribonuclease G low > 61
Escherichia coli ECRC99 0.43 KEDOAH_21680 rlmF 23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF 0.80 KEDOAH_10405 rng ribonuclease G — —
Escherichia fergusonii Becca 0.43 EFB2_03298 Ribosomal RNA large subunit methyltransferase F 0.80 EFB2_00584 Ribonuclease G low > 86
Escherichia coli Nissle 1917 0.43 ECOLIN_RS04295 23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF 0.80 ECOLIN_RS18605 ribonuclease G low > 55
Escherichia coli ECRC98 0.43 JDDGAC_09865 rlmF 23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF 0.80 JDDGAC_21370 rng ribonuclease G low > 87
Enterobacter sp. TBS_079 0.43 MPMX20_01436 Ribosomal RNA large subunit methyltransferase F 0.80 MPMX20_04153 Ribonuclease G low > 85
Pseudomonas fluorescens GW456-L13 0.43 PfGW456L13_1710 Ribosomal RNA large subunit methyltransferase F (EC 2.1.1.51) 0.57 PfGW456L13_5029 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) low > 87
Escherichia coli ECRC100 0.42 OKFHMN_06230 rlmF 23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF 0.80 OKFHMN_17745 rng ribonuclease G low > 79
Escherichia coli ECRC101 0.42 MCAODC_25445 rlmF 23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF 0.80 MCAODC_08265 rng ribonuclease G low > 87
Escherichia coli ECRC102 0.42 NIAGMN_04275 rlmF 23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF 0.80 NIAGMN_15505 rng ribonuclease G low > 80
Pseudomonas syringae pv. syringae B728a 0.42 Psyr_1085 23S rRNA m(6)A-1618 methyltransferase 0.56 Psyr_4159 RNAse G low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.42 Psyr_1085 23S rRNA m(6)A-1618 methyltransferase 0.56 Psyr_4159 RNAse G low > 86
Klebsiella pneumoniae MKP103 0.42 KDGMDA_17215 23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF 0.81 KDGMDA_06255 ribonuclease G low > 95
Pseudomonas lactucae CFBP13502 0.42 GEMAOFIL_01235 Ribosomal RNA large subunit methyltransferase F 0.57 GEMAOFIL_01059 Ribonuclease G low > 96
Pseudomonas orientalis W4I3 0.42 QF045_RS08135 23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF 0.57 QF045_RS07260 ribonuclease G low > 93
Pseudomonas simiae WCS417 0.42 PS417_05145 23S rRNA methyltransferase 0.57 PS417_04270 ribonuclease G low > 88
Pseudomonas fluorescens SBW25-INTG 0.42 PFLU_RS05215 23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF 0.57 PFLU_RS04325 ribonuclease G low > 109
Pseudomonas fluorescens SBW25 0.42 PFLU_RS05215 23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF 0.57 PFLU_RS04325 ribonuclease G low > 109
Pseudomonas sp. SVBP6 0.42 COO64_RS04395 rlmF 23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF 0.56 COO64_RS04210 rng ribonuclease G low > 93
Erwinia tracheiphila SCR3 0.41 LU632_RS09435 rlmF 23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF 0.79 LU632_RS21430 rng ribonuclease G low > 73
Shewanella oneidensis MR-1 0.41 SO_0134 putative SAM-dependent methyltransferase (RefSeq) 0.74 SO4094 cafA ribonuclease G (NCBI ptt file) low > 76
Erwinia tracheiphila HP pepo 2.2 0.41 IJEDHG_19895 rlmF 23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF 0.79 IJEDHG_13580 rng ribonuclease G low > 61
Erwinia amylovora T8 0.41 OLJFJH_16480 23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF 0.79 OLJFJH_06930 ribonuclease G low > 58
Klebsiella michiganensis M5al 0.41 BWI76_RS08955 23S rRNA (adenine(1618)-N(6))-methyltransferase 0.81 BWI76_RS25480 ribonuclease E/G low > 92
Mucilaginibacter yixingensis YX-36 DSM 26809 0.40 ABZR88_RS08425 23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF 0.29 ABZR88_RS20445 Rne/Rng family ribonuclease — —
Rahnella sp. WP5 0.39 EX31_RS18995 23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF 0.79 EX31_RS12255 ribonuclease G low > 89
Pantoea agglomerans CFBP13505 P0401 0.39 PagCFBP13505_RS04105 23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF 0.78 PagCFBP13505_RS11050 ribonuclease G low > 74
Dechlorosoma suillum PS 0.39 Dsui_3226 putative SAM-dependent methyltransferase 0.57 Dsui_0434 ribonuclease, Rne/Rng family low > 51
Alteromonas macleodii MIT1002 0.39 MIT1002_02912 Ribosomal RNA large subunit methyltransferase F 0.74 MIT1002_00224 Ribonuclease G low > 70
Pantoea sp. MT58 0.38 IAI47_13215 23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF 0.78 IAI47_02455 ribonuclease G low > 76
Methylophilus sp. DMC18 0.38 GFF249 Ribosomal RNA large subunit methyltransferase F 0.50 GFF861 Ribonuclease G low > 43
Shewanella amazonensis SB2B 0.37 Sama_3621 putative SAM-dependent methyltransferase (RefSeq) 0.72 Sama_0471 ribonuclease G (RefSeq) low > 62
Cellulophaga baltica 18 0.36 M666_RS16915 23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF 0.26 M666_RS03325 ribonuclease E/G — —

Not shown: 2 genomes with orthologs for CSW01_08115 only; 33 genomes with orthologs for CSW01_02205 only