Conservation of cofitness between CA264_17545 and CA264_15820 in Pontibacter actiniarum KMM 6156, DSM 19842

39 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pontibacter actiniarum KMM 6156, DSM 19842 1.0 CA264_17545 single-stranded-DNA-specific exonuclease RecJ 1.0 CA264_15820 transcription-repair coupling factor 0.46 10
Pedobacter sp. GW460-11-11-14-LB5 0.55 CA265_RS25225 single-stranded-DNA-specific exonuclease RecJ 0.56 CA265_RS21070 transcription-repair coupling factor — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.55 Echvi_1332 single-stranded-DNA-specific exonuclease RecJ 0.62 Echvi_1312 transcription-repair coupling factor (mfd) low > 79
Mucilaginibacter yixingensis YX-36 DSM 26809 0.54 ABZR88_RS18635 single-stranded-DNA-specific exonuclease RecJ 0.56 ABZR88_RS21080 transcription-repair coupling factor low > 71
Parabacteroides merdae CL09T00C40 0.51 HMPREF1078_RS07725 single-stranded-DNA-specific exonuclease RecJ 0.47 HMPREF1078_RS02110 transcription-repair coupling factor low > 61
Bacteroides stercoris CC31F 0.50 HMPREF1181_RS06545 single-stranded-DNA-specific exonuclease RecJ 0.47 HMPREF1181_RS04640 transcription-repair coupling factor low > 56
Bacteroides thetaiotaomicron VPI-5482 0.49 BT3939 single-stranded-DNA-specific exonuclease recJ (NCBI ptt file) 0.47 BT0252 transcription-repair coupling factor (NCBI ptt file) — —
Bacteroides ovatus ATCC 8483 0.49 BACOVA_01165 single-stranded-DNA-specific exonuclease RecJ 0.47 BACOVA_00401 transcription-repair coupling factor — —
Phocaeicola vulgatus CL09T03C04 0.48 HMPREF1058_RS14835 single-stranded-DNA-specific exonuclease RecJ 0.47 HMPREF1058_RS15450 transcription-repair coupling factor low > 67
Phocaeicola dorei CL03T12C01 0.48 ABI39_RS10550 single-stranded-DNA-specific exonuclease RecJ 0.47 ABI39_RS11420 transcription-repair coupling factor — —
Synechococcus elongatus PCC 7942 0.27 Synpcc7942_1886 recJ exonuclease RecJ 0.28 Synpcc7942_1326 mfd transcription-repair coupling factor low > 38
Pseudomonas simiae WCS417 0.24 PS417_22855 ssDNA exonuclease RecJ 0.25 PS417_07635 transcription-repair coupling factor low > 88
Cupriavidus basilensis FW507-4G11 0.24 RR42_RS06090 single-stranded DNA exonuclease 0.26 RR42_RS07845 transcription-repair coupling factor 0.62 11
Pseudomonas syringae pv. syringae B728a ΔmexB 0.24 Psyr_1298 exonuclease RecJ 0.28 Psyr_1896 transcription-repair coupling factor low > 86
Pseudomonas syringae pv. syringae B728a 0.24 Psyr_1298 exonuclease RecJ 0.28 Psyr_1896 transcription-repair coupling factor 0.29 42
Vibrio cholerae E7946 ATCC 55056 0.24 CSW01_12240 single-stranded-DNA-specific exonuclease RecJ 0.27 CSW01_09445 transcription-repair coupling factor low > 62
Alteromonas macleodii MIT1002 0.24 MIT1002_00788 Single-stranded-DNA-specific exonuclease RecJ 0.25 MIT1002_01646 Transcription-repair-coupling factor low > 70
Pseudomonas fluorescens SBW25-INTG 0.24 PFLU_RS24515 single-stranded-DNA-specific exonuclease RecJ 0.25 PFLU_RS07710 transcription-repair coupling factor low > 109
Pseudomonas fluorescens SBW25 0.24 PFLU_RS24515 single-stranded-DNA-specific exonuclease RecJ 0.25 PFLU_RS07710 transcription-repair coupling factor low > 109
Pseudomonas fluorescens FW300-N2C3 0.24 AO356_06345 single-stranded-DNA-specific exonuclease RecJ 0.26 AO356_02270 transcription-repair coupling factor low > 104
Pseudomonas sp. RS175 0.24 PFR28_00339 Single-stranded-DNA-specific exonuclease RecJ 0.26 PFR28_01123 Transcription-repair-coupling factor low > 88
Kangiella aquimarina DSM 16071 0.24 B158DRAFT_2268 single-stranded-DNA-specific exonuclease RecJ 0.27 B158DRAFT_1800 transcription-repair coupling factor 0.75 2
Marinobacter adhaerens HP15 0.23 HP15_766 bacterial RecJ exonuclease 0.27 HP15_2257 transcription-repair-coupling factor 0.77 7
Shewanella loihica PV-4 0.23 Shew_0772 single-stranded-DNA-specific exonuclease RecJ (RefSeq) 0.28 Shew_1630 transcription-repair coupling factor (RefSeq) 0.61 16
Pseudomonas sp. S08-1 0.23 OH686_06955 single-stranded-DNA-specific exonuclease RecJ 0.28 OH686_21990 transcription-repair coupling factor low > 80
Magnetospirillum magneticum AMB-1 0.23 AMB_RS18875 single-stranded-DNA-specific exonuclease RecJ 0.26 AMB_RS12390 transcription-repair coupling factor — —
Agrobacterium fabrum C58 0.23 Atu1586 single-stranded-DNA-specific exonuclease 0.26 Atu1778 transcription-repair coupling factor — —
Shewanella amazonensis SB2B 0.22 Sama_2737 single-stranded-DNA-specific exonuclease RecJ (RefSeq) 0.28 Sama_1330 transcription-repair coupling factor (RefSeq) 0.59 12
Bosea sp. OAE506 0.22 ABIE41_RS19130 single-stranded-DNA-specific exonuclease RecJ 0.26 ABIE41_RS15825 transcription-repair coupling factor low > 77
Rhizobium sp. OAE497 0.22 ABIE40_RS08655 single-stranded-DNA-specific exonuclease RecJ 0.23 ABIE40_RS09310 transcription-repair coupling factor — —
Pseudomonas stutzeri RCH2 0.22 Psest_1544 single-stranded-DNA-specific exonuclease RecJ 0.26 Psest_1653 transcription-repair coupling factor (mfd) 0.24 33
Dechlorosoma suillum PS 0.21 Dsui_2860 single-stranded-DNA-specific exonuclease RecJ 0.25 Dsui_2385 transcription-repair coupling factor Mfd — —
Ralstonia sp. UNC404CL21Col 0.21 ABZR87_RS10395 single-stranded-DNA-specific exonuclease RecJ 0.27 ABZR87_RS13240 transcription-repair coupling factor low > 80
Rhodopseudomonas palustris CGA009 0.20 TX73_012960 single-stranded-DNA-specific exonuclease RecJ 0.27 TX73_013805 transcription-repair coupling factor — —
Dyella japonica UNC79MFTsu3.2 0.19 ABZR86_RS02800 single-stranded-DNA-specific exonuclease RecJ 0.27 ABZR86_RS21210 transcription-repair coupling factor low > 74
Sinorhizobium meliloti 1021 0.19 SMc00292 single-stranded-DNA-specific exonuclease 0.26 SMc04450 transcription-repair coupling factor — —
Xanthomonas campestris pv. campestris strain 8004 0.19 Xcc-8004.2909.1 Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) 0.27 Xcc-8004.1775.1 Transcription-repair coupling factor low > 74
Rhodanobacter denitrificans FW104-10B01 0.19 LRK54_RS00315 single-stranded-DNA-specific exonuclease RecJ 0.28 LRK54_RS02040 transcription-repair coupling factor low > 59
Brevundimonas sp. GW460-12-10-14-LB2 0.18 A4249_RS05895 single-stranded-DNA-specific exonuclease RecJ 0.23 A4249_RS04775 transcription-repair coupling factor — —
Rhodanobacter denitrificans MT42 0.17 LRK55_RS18310 DHHA1 domain-containing protein 0.28 LRK55_RS01815 transcription-repair coupling factor low > 63

Not shown: 57 genomes with orthologs for CA264_17545 only; 3 genomes with orthologs for CA264_15820 only