Conservation of cofitness between B158DRAFT_2275 and B158DRAFT_1465 in Kangiella aquimarina DSM 16071

53 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Kangiella aquimarina DSM 16071 1.0 B158DRAFT_2275 23S rRNA (uracil-5-)-methyltransferase RumA 1.0 B158DRAFT_1465 FeS assembly protein IscX 0.46 6
Acinetobacter radioresistens SK82 0.41 MPMX26_00538 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.59 MPMX26_00424 Protein IscX low > 36
Paraburkholderia bryophila 376MFSha3.1 0.40 H281DRAFT_00846 23S rRNA m(5)U-1939 methyltransferase 0.62 H281DRAFT_00484 FeS assembly protein IscX — —
Cupriavidus basilensis FW507-4G11 0.40 RR42_RS13170 23S rRNA methyltransferase 0.63 RR42_RS06060 hypothetical protein — —
Burkholderia phytofirmans PsJN 0.40 BPHYT_RS09125 23S rRNA methyltransferase 0.62 BPHYT_RS12750 hypothetical protein — —
Herbaspirillum seropedicae SmR1 0.38 HSERO_RS14825 23S rRNA methyltransferase 0.69 HSERO_RS15735 hypothetical protein low > 78
Paraburkholderia sabiae LMG 24235 0.38 QEN71_RS22225 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.66 QEN71_RS05815 Fe-S cluster assembly protein IscX — —
Ralstonia sp. UNC404CL21Col 0.38 ABZR87_RS10885 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.62 ABZR87_RS10015 Fe-S cluster assembly protein IscX low > 80
Ralstonia solanacearum GMI1000 0.38 RS_RS06055 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.59 RS_RS05080 Fe-S assembly protein IscX low > 80
Vibrio cholerae E7946 ATCC 55056 0.38 CSW01_12410 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.61 CSW01_03915 Fe-S assembly protein IscX low > 62
Ralstonia solanacearum UW163 0.38 UW163_RS12710 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.63 UW163_RS11765 Fe-S assembly protein IscX — —
Ralstonia solanacearum IBSBF1503 0.38 RALBFv3_RS15245 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.63 RALBFv3_RS14300 Fe-S assembly protein IscX — —
Ralstonia solanacearum PSI07 0.38 RPSI07_RS18130 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.63 RPSI07_RS19165 Fe-S assembly protein IscX low > 81
Pectobacterium carotovorum WPP14 0.37 HER17_RS04110 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.50 HER17_RS06045 Fe-S cluster assembly protein IscX low > 75
Pseudomonas fluorescens SBW25-INTG 0.37 PFLU_RS22100 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.52 PFLU_RS24825 Fe-S cluster assembly protein IscX low > 109
Pseudomonas fluorescens SBW25 0.37 PFLU_RS22100 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.52 PFLU_RS24825 Fe-S cluster assembly protein IscX low > 109
Dechlorosoma suillum PS 0.37 Dsui_1981 23S rRNA (uracil-5-)-methyltransferase RumA 0.70 Dsui_2377 FeS assembly protein IscX low > 51
Pseudomonas simiae WCS417 0.36 PS417_20155 23S rRNA methyltransferase 0.52 PS417_23170 FeS assembly protein IscX low > 88
Escherichia coli ECRC101 0.36 MCAODC_10770 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.57 MCAODC_12180 iscX Fe-S cluster assembly protein IscX — —
Escherichia coli ECRC99 0.36 KEDOAH_07885 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.57 KEDOAH_06570 iscX Fe-S cluster assembly protein IscX — —
Escherichia coli ECRC98 0.36 JDDGAC_23910 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.57 JDDGAC_25325 iscX Fe-S cluster assembly protein IscX — —
Escherichia coli ECRC100 0.36 OKFHMN_20245 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.57 OKFHMN_21650 iscX Fe-S cluster assembly protein IscX low > 80
Escherichia coli ECRC102 0.36 NIAGMN_18015 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.57 NIAGMN_19420 iscX Fe-S cluster assembly protein IscX — —
Escherichia coli BW25113 0.36 b2785 rumA 23S rRNA (uracil-5-)-methyltransferase (NCBI) 0.57 b2524 yfhJ hypothetical protein (NCBI) — —
Dickeya dadantii 3937 0.36 DDA3937_RS17020 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.54 DDA3937_RS15515 Fe-S cluster assembly protein IscX — —
Pseudomonas stutzeri RCH2 0.36 Psest_1639 23S rRNA (uracil-5-)-methyltransferase RumA 0.66 Psest_1257 FeS assembly protein IscX — —
Serratia liquefaciens MT49 0.36 IAI46_03595 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.58 IAI46_19325 Fe-S cluster assembly protein IscX low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.36 OHPLBJKB_00946 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.57 OHPLBJKB_01185 Protein IscX low > 73
Escherichia coli ECOR38 0.36 HEPCGN_19495 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.57 HEPCGN_20790 iscX Fe-S cluster assembly protein IscX low > 87
Escherichia coli ECRC62 0.36 BNILDI_10625 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.57 BNILDI_12120 iscX Fe-S cluster assembly protein IscX low > 75
Escherichia coli Nissle 1917 0.36 ECOLIN_RS15520 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.58 ECOLIN_RS14335 Fe-S cluster assembly protein IscX — —
Escherichia coli BL21 0.35 ECD_02630 23S rRNA m(5)U1939 methyltransferase, SAM-dependent 0.57 ECD_02416 Fe(2+) donor and activity modulator for cysteine desulfurase low > 61
Escherichia coli ECOR27 0.35 NOLOHH_12120 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.57 NOLOHH_13320 iscX Fe-S cluster assembly protein IscX low > 75
Enterobacter sp. TBS_079 0.35 MPMX20_03654 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.44 MPMX20_03405 Protein IscX low > 85
Dickeya dianthicola ME23 0.35 DZA65_RS18150 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.54 DZA65_RS16690 Fe-S cluster assembly protein IscX low > 75
Escherichia fergusonii Becca 0.35 EFB2_01132 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.58 EFB2_01366 Protein IscX low > 86
Pseudomonas fluorescens FW300-N1B4 0.35 Pf1N1B4_3507 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 0.66 Pf1N1B4_859 Believed to be involved in assembly of Fe-S clusters — —
Dickeya dianthicola 67-19 0.35 HGI48_RS17075 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.54 HGI48_RS15615 Fe-S cluster assembly protein IscX low > 71
Pseudomonas fluorescens FW300-N2C3 0.34 AO356_19055 23S rRNA methyltransferase 0.55 AO356_06615 FeS assembly protein IscX low > 104
Pseudomonas sp. S08-1 0.34 OH686_18955 23S rRNA (uracil-5-)-methyltransferase RumA 0.65 OH686_17505 FeS assembly protein IscX low > 80
Pseudomonas fluorescens FW300-N2E2 0.34 Pf6N2E2_5722 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 0.52 Pf6N2E2_3183 Believed to be involved in assembly of Fe-S clusters low > 103
Enterobacter asburiae PDN3 0.34 EX28DRAFT_2865 23S rRNA (uracil-5-)-methyltransferase RumA 0.57 EX28DRAFT_0116 FeS assembly protein IscX low > 76
Shewanella sp. ANA-3 0.34 Shewana3_1110 rumA 23S rRNA 5-methyluridine methyltransferase (RefSeq) 0.69 Shewana3_2273 hypothetical protein (RefSeq) — —
Pseudomonas fluorescens FW300-N2E3 0.34 AO353_02715 23S rRNA methyltransferase 0.67 AO353_15865 Fe-S assembly protein IscX — —
Pseudomonas syringae pv. syringae B728a 0.34 Psyr_3696 23S rRNA m(5)U-1939 methyltransferase 0.61 Psyr_1243 Protein of unknown function DUF528 — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.34 Psyr_3696 23S rRNA m(5)U-1939 methyltransferase 0.61 Psyr_1243 Protein of unknown function DUF528 — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.34 GFF4838 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) 0.57 GFF2429 Believed to be involved in assembly of Fe-S clusters — —
Shewanella oneidensis MR-1 0.33 SO3456 RNA methyltransferase, TrmA family (NCBI ptt file) 0.68 SO2271 conserved hypothetical protein (NCBI ptt file) — —
Pseudomonas sp. RS175 0.33 PFR28_03224 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.66 PFR28_00292 Protein IscX low > 88
Pseudomonas fluorescens GW456-L13 0.33 PfGW456L13_2033 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 0.67 PfGW456L13_4867 Believed to be involved in assembly of Fe-S clusters — —
Pseudomonas putida KT2440 0.33 PP_1655 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.66 PP_0848 donor of Fe2+ and regulator of cysteine desulfurase activity low > 96
Klebsiella michiganensis M5al 0.32 BWI76_RS22810 23S rRNA (uracil(1939)-C(5))-methyltransferase 0.55 BWI76_RS21130 Fe-S assembly protein IscX low > 92
Shewanella loihica PV-4 0.31 Shew_1201 rumA 23S rRNA 5-methyluridine methyltransferase (RefSeq) 0.66 Shew_2311 hypothetical protein (RefSeq) — —
Magnetospirillum magneticum AMB-1 0.15 AMB_RS01660 class I SAM-dependent RNA methyltransferase 0.56 AMB_RS15225 Fe-S assembly protein IscX — —

Not shown: 42 genomes with orthologs for B158DRAFT_2275 only; 1 genomes with orthologs for B158DRAFT_1465 only