Conservation of cofitness between Atu0690 and Atu2825 in Agrobacterium fabrum C58

52 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Agrobacterium fabrum C58 1.0 Atu0690 hypothetical protein 1.0 Atu2825 Sun protein 0.26 14
Rhizobium sp. OAE497 0.81 ABIE40_RS03765 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.63 ABIE40_RS19140 RsmB/NOP family class I SAM-dependent RNA methyltransferase low > 107
Sinorhizobium meliloti 1021 0.72 SMc00902 hypothetical protein 0.64 SMc04090 sun protein — —
Bosea sp. OAE506 0.56 ABIE41_RS23215 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.39 ABIE41_RS05105 RsmB/NOP family class I SAM-dependent RNA methyltransferase low > 77
Rhodopseudomonas palustris CGA009 0.48 TX73_005985 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.39 TX73_000155 transcription antitermination factor NusB low > 86
Phaeobacter inhibens DSM 17395 0.44 PGA1_c29260 ribosomal RNA small subunit methyltransferase D 0.26 PGA1_c32880 putative ribosomal RNA small subunit methyltransferase B 0.32 5
Caulobacter crescentus NA1000 0.44 CCNA_00227 methyltransferase 0.30 CCNA_00101 16S rRNA m5C methyltransferase RsmB low > 66
Caulobacter crescentus NA1000 Δfur 0.44 CCNA_00227 methyltransferase 0.30 CCNA_00101 16S rRNA m5C methyltransferase RsmB low > 67
Brevundimonas sp. GW460-12-10-14-LB2 0.42 A4249_RS04215 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.29 A4249_RS13165 RsmB/NOP family class I SAM-dependent RNA methyltransferase low > 48
Azospirillum brasilense Sp245 0.37 AZOBR_RS04500 methyltransferase 0.36 AZOBR_RS00235 MFS transporter — —
Dinoroseobacter shibae DFL-12 0.34 Dshi_0115 putative methyltransferase (RefSeq) 0.30 Dshi_3033 Fmu (Sun) domain protein (RefSeq) low > 64
Azospirillum sp. SherDot2 0.33 MPMX19_01626 Ribosomal RNA small subunit methyltransferase D 0.37 MPMX19_02327 Ribosomal RNA small subunit methyltransferase B — —
Rhodospirillum rubrum S1H 0.33 Rru_A0653 hypothetical protein (NCBI) 0.28 Rru_A3660 tRNA and rRNA cytosine-C5-methylase (NCBI) — —
Magnetospirillum magneticum AMB-1 0.33 AMB_RS20860 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.33 AMB_RS00745 MFS transporter low > 64
Sphingomonas koreensis DSMZ 15582 0.28 Ga0059261_0246 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.27 Ga0059261_2239 tRNA and rRNA cytosine-C5-methylases low > 68
Dickeya dianthicola 67-19 0.28 HGI48_RS20760 16S rRNA (guanine(966)-N(2))-methyltransferase 0.20 HGI48_RS19225 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 71
Desulfovibrio vulgaris Miyazaki F 0.28 DvMF_0172 methyltransferase (RefSeq) 0.10 DvMF_2042 NusB/RsmB/TIM44 (RefSeq) 0.45 1
Dickeya dianthicola ME23 0.28 DZA65_RS21770 16S rRNA (guanine(966)-N(2))-methyltransferase 0.20 DZA65_RS20350 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.41 6
Dickeya dadantii 3937 0.27 DDA3937_RS00630 16S rRNA (guanine(966)-N(2))-methyltransferase 0.21 DDA3937_RS19135 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.47 64
Shewanella oneidensis MR-1 0.27 SO4587 conserved hypothetical protein TIGR00095 (NCBI ptt file) 0.19 SO0030 sun sun protein (NCBI ptt file) 0.58 2
Marinobacter adhaerens HP15 0.27 HP15_3491 conserved hypothetical protein 0.16 HP15_3742 Fmu, rRNA SAM-dependent methyltransferase low > 73
Escherichia coli HS(pFamp)R (ATCC 700891) 0.27 OHPLBJKB_00238 Ribosomal RNA small subunit methyltransferase D 0.19 OHPLBJKB_00415 Ribosomal RNA small subunit methyltransferase B 0.80 29
Shewanella sp. ANA-3 0.26 Shewana3_3973 putative methyltransferase (RefSeq) 0.20 Shewana3_0033 sun protein (RefSeq) 0.75 1
Escherichia fergusonii Becca 0.26 EFB2_00351 Ribosomal RNA small subunit methyltransferase D 0.18 EFB2_00535 Ribosomal RNA small subunit methyltransferase B low > 86
Escherichia coli Nissle 1917 0.26 ECOLIN_RS19815 16S rRNA (guanine(966)-N(2))-methyltransferase 0.18 ECOLIN_RS18875 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 52
Escherichia coli ECOR27 0.26 NOLOHH_08500 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.19 NOLOHH_09320 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 57
Escherichia coli ECOR38 0.26 HEPCGN_15525 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.18 HEPCGN_16350 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 85
Escherichia coli BW25113 0.26 b3465 yhhF predicted methyltransferase (NCBI) 0.19 b3289 rsmB 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent (NCBI) 0.65 1
Escherichia coli ECRC62 0.26 BNILDI_03015 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.19 BNILDI_02200 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB — —
Pectobacterium carotovorum WPP14 0.26 HER17_RS00465 16S rRNA (guanine(966)-N(2))-methyltransferase 0.20 HER17_RS02215 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 75
Erwinia tracheiphila SCR3 0.26 LU632_RS19285 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.20 LU632_RS22480 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 74
Pantoea sp. MT58 0.26 IAI47_01535 16S rRNA (guanine(966)-N(2))-methyltransferase 0.20 IAI47_02280 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 76
Escherichia coli ECRC98 0.25 JDDGAC_20325 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.18 JDDGAC_21150 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB — —
Escherichia coli ECRC101 0.25 MCAODC_07225 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.18 MCAODC_08050 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB — —
Escherichia coli ECRC102 0.25 NIAGMN_14465 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.18 NIAGMN_15290 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB — —
Escherichia coli ECRC99 0.25 KEDOAH_11445 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.18 KEDOAH_10620 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB — —
Escherichia coli ECRC101 0.25 OKFHMN_16695 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.18 OKFHMN_17520 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB — —
Escherichia coli BL21 0.25 ECD_03314 16S rRNA m(2)G966 methyltransferase, SAM-dependent 0.19 ECD_03139 16S rRNA m(5)C967 methyltransferase, SAM-dependent 0.71 9
Pseudomonas syringae pv. syringae B728a 0.25 Psyr_4754 16S rRNA m(2)G-966 methyltransferase 0.15 Psyr_0017 16S rRNA m(5)C-967 methyltransferase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.25 Psyr_4754 16S rRNA m(2)G-966 methyltransferase 0.15 Psyr_0017 16S rRNA m(5)C-967 methyltransferase low > 86
Pseudomonas sp. S08-1 0.25 OH686_14220 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.16 OH686_12525 16S rRNA (cytosine(967)-C(5))-methyltransferase low > 80
Rhodanobacter sp. FW510-T8 0.25 OKGIIK_02580 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.14 OKGIIK_13790 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 52
Klebsiella michiganensis M5al 0.25 BWI76_RS26405 16S rRNA (guanine(966)-N(2))-methyltransferase 0.18 BWI76_RS25680 16S rRNA m5C967 methyltransferase low > 92
Serratia liquefaciens MT49 0.25 IAI46_00920 16S rRNA (guanine(966)-N(2))-methyltransferase 0.21 IAI46_23275 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 86
Rhodanobacter denitrificans FW104-10B01 0.24 LRK54_RS13340 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.12 LRK54_RS10125 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 59
Enterobacter sp. TBS_079 0.24 MPMX20_04342 Ribosomal RNA small subunit methyltransferase D 0.18 MPMX20_04196 Ribosomal RNA small subunit methyltransferase B low > 85
Rahnella sp. WP5 0.24 EX31_RS14835 16S rRNA (guanine(966)-N(2))-methyltransferase 0.19 EX31_RS15985 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.30 43
Rhodanobacter denitrificans MT42 0.24 LRK55_RS13080 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.12 LRK55_RS09765 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 63
Enterobacter asburiae PDN3 0.24 EX28DRAFT_4299 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.19 EX28DRAFT_0039 16S rRNA (cytosine(967)-C(5))-methyltransferase 0.39 41
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.24 GFF540 16S rRNA (guanine(966)-N(2))-methyltransferase (EC 2.1.1.171) 0.20 GFF2390 16S rRNA (cytosine(967)-C(5))-methyltransferase (EC 2.1.1.176) ## SSU rRNA m5C967 low > 78
Pseudomonas putida KT2440 0.24 PP_5114 putative adenine methyltransferase 0.16 PP_0066 Ribosomal RNA small subunit methyltransferase B 0.66 2
Shewanella loihica PV-4 0.23 Shew_3607 putative methyltransferase (RefSeq) 0.21 Shew_3738 sun protein (RefSeq) 0.72 1
Dyella japonica UNC79MFTsu3.2 0.22 ABZR86_RS19990 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.17 ABZR86_RS13890 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 74

Not shown: 14 genomes with orthologs for Atu0690 only; 24 genomes with orthologs for Atu2825 only