| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Ralstonia sp. UNC404CL21Col | 1.0 | ABZR87_RS13545 | | amino acid permease | 1.0 | ABZR87_RS10175 | | MucB/RseB C-terminal domain-containing protein | 0.44 | 15 |
| Ralstonia solanacearum PSI07 | 0.91 | RPSI07_RS15760 | | amino acid permease | 0.92 | RPSI07_RS19005 | | sugar dehydratase | low | > 81 |
| Ralstonia solanacearum UW163 | 0.90 | UW163_RS15035 | | amino acid permease | 0.92 | UW163_RS11920 | | sugar dehydratase | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.90 | RALBFv3_RS01725 | | amino acid permease | 0.92 | RALBFv3_RS14455 | | sugar dehydratase | low | > 76 |
| Ralstonia solanacearum GMI1000 | 0.88 | RS_RS08000 | | amino acid permease | 0.92 | RS_RS05235 | | sugar dehydratase | — | — |
| Cupriavidus basilensis FW507-4G11 | 0.79 | RR42_RS01585 | | amino acid permease | 0.62 | RR42_RS14070 | | sugar dehydratase | low | > 128 |
| Paraburkholderia graminis OAS925 | 0.73 | ABIE53_000447 | | APA family basic amino acid/polyamine antiporter | 0.41 | ABIE53_003041 | | sigma-E factor negative regulatory protein RseB | low | > 113 |
| Paraburkholderia sabiae LMG 24235 | 0.71 | QEN71_RS00500 | | amino acid permease | 0.42 | QEN71_RS04585 | | MucB/RseB C-terminal domain-containing protein | low | > 153 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.71 | H281DRAFT_02180 | | amino acid/polyamine/organocation transporter, APC superfamily | 0.41 | H281DRAFT_04357 | | sigma E regulatory protein, MucB/RseB | low | > 103 |
| Burkholderia phytofirmans PsJN | 0.69 | BPHYT_RS01785 | | amino acid permease | 0.41 | BPHYT_RS14395 | | sugar dehydratase | 0.41 | 54 |
| Serratia liquefaciens MT49 | 0.13 | IAI46_17155 | | APC family permease | 0.10 | IAI46_19575 | | sigma-E factor regulatory protein RseB | low | > 86 |
| Pseudomonas putida KT2440 | 0.13 | PP_0544 | | Ethanolamine transporter | 0.14 | PP_1429 | | Sigma factor AlgU regulatory protein MucB | low | > 96 |
| Pseudomonas fluorescens FW300-N2E2 | 0.12 | Pf6N2E2_2179 | | Putrescine importer | 0.11 | Pf6N2E2_2754 | | Sigma factor RpoE negative regulatory protein RseB precursor | low | > 103 |
| Pseudomonas fluorescens FW300-N1B4 | 0.12 | Pf1N1B4_5855 | | Putrescine importer | 0.10 | Pf1N1B4_3325 | | Sigma factor RpoE negative regulatory protein RseB precursor | low | > 87 |
| Pseudomonas sp. RS175 | 0.12 | PFR28_01269 | | Putrescine importer PuuP | 0.11 | PFR28_00692 | | Sigma factor AlgU regulatory protein MucB | 0.38 | 33 |
| Pectobacterium carotovorum WPP14 | 0.12 | HER17_RS12140 | | APC family permease | 0.07 | HER17_RS05790 | | sigma-E factor regulatory protein RseB | low | > 75 |
| Pseudomonas stutzeri RCH2 | 0.12 | Psest_0670 | | ethanolamine permease | 0.11 | Psest_3098 | | Negative regulator of sigma E activity | — | — |
| Rahnella sp. WP5 | 0.12 | EX31_RS20130 | | ethanolamine permease | 0.08 | EX31_RS21810 | | sigma-E factor regulatory protein RseB | low | > 89 |
| Pseudomonas fluorescens FW300-N2C3 | 0.12 | AO356_01520 | | porin | 0.11 | AO356_04565 | | RNA polymerase subunit sigma | low | > 104 |
| Dickeya dianthicola 67-19 | 0.12 | HGI48_RS09825 | | APC family permease | 0.10 | HGI48_RS15840 | | sigma-E factor regulatory protein RseB | low | > 71 |
| Pseudomonas fluorescens FW300-N2E3 | 0.12 | AO353_27910 | | porin | 0.11 | AO353_17635 | | RNA polymerase subunit sigma | low | > 101 |
| Dickeya dadantii 3937 | 0.12 | DDA3937_RS09815 | | APC family permease | 0.10 | DDA3937_RS15755 | | sigma-E factor regulatory protein RseB | low | > 74 |
| Dickeya dianthicola ME23 | 0.12 | DZA65_RS10150 | | APC family permease | 0.10 | DZA65_RS16920 | | sigma-E factor regulatory protein RseB | low | > 75 |
| Shewanella sp. ANA-3 | 0.12 | Shewana3_3634 | | amino acid permease-associated region (RefSeq) | 0.08 | Shewana3_3030 | | sigma E regulatory protein, MucB/RseB (RefSeq) | low | > 73 |
| Klebsiella michiganensis M5al | 0.12 | BWI76_RS03640 | | amino acid permease-associated protein | 0.09 | BWI76_RS21345 | | sigma-E factor regulatory protein RseB | low | > 92 |
| Shewanella oneidensis MR-1 | 0.12 | SO4081 | | amino acid permease (NCBI ptt file) | 0.09 | SO1344 | rseB | sigma-E factor regulatory protein RseB (NCBI ptt file) | low | > 76 |
| Escherichia coli BW25113 | 0.11 | b1296 | ycjJ | putative amino acid/amine transport protein (VIMSS) | 0.12 | b2571 | rseB | periplasmic negative regulator of sigmaE (NCBI) | low | > 76 |
| Escherichia coli BL21 | 0.11 | ECD_01273 | | putrescine importer | 0.12 | ECD_02465 | | anti-sigma E factor, binds RseA | low | > 61 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.11 | OHPLBJKB_02386 | | Putrescine importer PuuP | 0.12 | OHPLBJKB_01136 | | Sigma-E factor regulatory protein RseB | low | > 73 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.11 | Psyr_2379 | | amino acid/polyamine/organocation transporter, APC superfamily | 0.11 | Psyr_3956 | | sigma E regulatory protein, MucB/RseB | low | > 86 |
| Escherichia coli ECOR27 | 0.11 | NOLOHH_20135 | puuP | putrescine/proton symporter PuuP | 0.12 | NOLOHH_13060 | rseB | sigma-E factor regulatory protein RseB | low | > 75 |
| Pseudomonas syringae pv. syringae B728a | 0.11 | Psyr_2379 | | amino acid/polyamine/organocation transporter, APC superfamily | 0.11 | Psyr_3956 | | sigma E regulatory protein, MucB/RseB | low | > 86 |
| Escherichia coli ECRC62 | 0.11 | BNILDI_18285 | puuP | putrescine/proton symporter PuuP | 0.12 | BNILDI_11860 | rseB | sigma-E factor regulatory protein RseB | 0.78 | 3 |
| Herbaspirillum seropedicae SmR1 | 0.11 | HSERO_RS12590 | | ethanolamin permease | 0.30 | HSERO_RS09635 | | transcriptional regulator | low | > 78 |
| Escherichia coli ECRC101 | 0.11 | MCAODC_15820 | puuP | putrescine/proton symporter PuuP | 0.12 | MCAODC_11915 | rseB | sigma-E factor regulatory protein RseB | low | > 87 |
| Escherichia coli ECRC99 | 0.11 | KEDOAH_26325 | puuP | putrescine/proton symporter PuuP | 0.12 | KEDOAH_06835 | rseB | sigma-E factor regulatory protein RseB | — | — |
| Enterobacter asburiae PDN3 | 0.11 | EX28DRAFT_1496 | | Amino acid transporters | 0.10 | EX28DRAFT_0074 | | sigma E regulatory protein, MucB/RseB | low | > 76 |
| Escherichia coli ECRC102 | 0.11 | NIAGMN_26620 | puuP | putrescine/proton symporter PuuP | 0.12 | NIAGMN_19155 | rseB | sigma-E factor regulatory protein RseB | — | — |
| Escherichia coli ECRC100 | 0.11 | OKFHMN_02450 | puuP | putrescine/proton symporter PuuP | 0.12 | OKFHMN_21385 | rseB | sigma-E factor regulatory protein RseB | low | > 80 |
| Escherichia coli ECRC98 | 0.11 | JDDGAC_04995 | puuP | putrescine/proton symporter PuuP | 0.12 | JDDGAC_25050 | rseB | sigma-E factor regulatory protein RseB | low | > 86 |
| Escherichia coli Nissle 1917 | 0.11 | ECOLIN_RS11915 | | putrescine/proton symporter PlaP | 0.12 | ECOLIN_RS14550 | | sigma-E factor regulatory protein RseB | low | > 55 |
| Pantoea sp. MT58 | 0.11 | IAI47_07130 | | APC family permease | 0.09 | IAI47_04860 | | sigma-E factor regulatory protein RseB | low | > 76 |
| Enterobacter sp. TBS_079 | 0.11 | MPMX20_02998 | | Low-affinity putrescine importer PlaP | 0.11 | MPMX20_03442 | | Sigma-E factor regulatory protein RseB | low | > 85 |
| Escherichia fergusonii Becca | 0.10 | EFB2_01842 | | Low-affinity putrescine importer PlaP | 0.12 | EFB2_01325 | | Sigma-E factor regulatory protein RseB | low | > 86 |
| Escherichia coli ECOR38 | 0.10 | HEPCGN_03255 | plaP | putrescine/proton symporter PlaP | 0.12 | HEPCGN_20530 | rseB | sigma-E factor regulatory protein RseB | low | > 87 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.10 | GFF3916 | | Putrescine importer | 0.11 | GFF2109 | | Sigma factor RpoE negative regulatory protein RseB precursor | low | > 78 |
| Variovorax sp. OAS795 | 0.10 | ABID97_RS19505 | | ethanolamine permease | 0.28 | ABID97_RS08340 | | MucB/RseB C-terminal domain-containing protein | low | > 91 |
| Pseudomonas sp. S08-1 | 0.09 | OH686_03555 | | Lysine/cadaverine antiporter membrane protein CadB | 0.13 | OH686_20055 | | Sigma factor RpoE negative regulatory protein RseB precursor | — | — |
| Marinobacter adhaerens HP15 | 0.08 | HP15_180 | | amino acid transporter | 0.14 | HP15_777 | | sigma E regulatory protein, MucB/RseB | — | — |
Not shown: 26 genomes with orthologs for ABZR87_RS13545 only; 11 genomes with orthologs for ABZR87_RS10175 only