Conservation of cofitness between Sama_0255 and Sama_3334 in Shewanella amazonensis SB2B

54 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Shewanella amazonensis SB2B 1.0 Sama_0255 acetylornithine deacetylase (RefSeq) 1.0 Sama_3334 ornithine decarboxylase (RefSeq) 0.49 5
Escherichia coli BW25113 0.58 b3957 argE acetylornithine deacetylase (NCBI) 0.72 b0693 speF ornithine decarboxylase isozyme, inducible (NCBI) low > 76
Escherichia coli ECOR27 0.58 NOLOHH_05735 argE acetylornithine deacetylase 0.73 NOLOHH_23470 speF ornithine decarboxylase SpeF low > 75
Enterobacter sp. TBS_079 0.58 MPMX20_04523 Acetylornithine deacetylase 0.73 MPMX20_01336 Inducible ornithine decarboxylase low > 85
Escherichia coli BL21 0.58 ECD_03842 acetylornithine deacetylase 0.72 ECD_00649 ornithine decarboxylase isozyme, inducible low > 61
Escherichia coli HS(pFamp)R (ATCC 700891) 0.58 OHPLBJKB_04093 Acetylornithine deacetylase 0.68 OHPLBJKB_00751 Constitutive ornithine decarboxylase low > 73
Enterobacter asburiae PDN3 0.58 EX28DRAFT_4419 acetylornithine deacetylase (ArgE) 0.74 EX28DRAFT_2285 ornithine decarboxylase SpeF low > 76
Escherichia fergusonii Becca 0.58 EFB2_04657 Acetylornithine deacetylase 0.73 EFB2_03404 Inducible ornithine decarboxylase low > 86
Escherichia coli Nissle 1917 0.58 ECOLIN_RS22840 acetylornithine deacetylase 0.73 ECOLIN_RS03740 ornithine decarboxylase SpeF — —
Escherichia coli ECOR38 0.58 HEPCGN_12235 argE acetylornithine deacetylase 0.72 HEPCGN_01145 speF ornithine decarboxylase SpeF low > 87
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.57 GFF2343 Acetylornithine deacetylase (EC 3.5.1.16) 0.73 GFF4604 Ornithine decarboxylase (EC 4.1.1.17) low > 78
Escherichia coli ECRC62 0.57 BNILDI_05790 argE acetylornithine deacetylase 0.73 BNILDI_21475 speF ornithine decarboxylase SpeF low > 75
Escherichia coli ECRC101 0.57 MCAODC_04090 argE acetylornithine deacetylase 0.73 MCAODC_26305 speF ornithine decarboxylase SpeF low > 87
Escherichia coli ECRC100 0.57 OKFHMN_13590 argE acetylornithine deacetylase 0.73 OKFHMN_07090 speF ornithine decarboxylase SpeF low > 80
Escherichia coli ECRC98 0.57 JDDGAC_17215 argE acetylornithine deacetylase 0.73 JDDGAC_10740 speF ornithine decarboxylase SpeF low > 86
Escherichia coli ECRC99 0.57 KEDOAH_14570 argE acetylornithine deacetylase 0.73 KEDOAH_20880 speF ornithine decarboxylase SpeF — —
Escherichia coli ECRC102 0.57 NIAGMN_11340 argE acetylornithine deacetylase 0.73 NIAGMN_05145 speF ornithine decarboxylase SpeF — —
Pectobacterium carotovorum WPP14 0.57 HER17_RS20635 acetylornithine deacetylase 0.69 HER17_RS16680 ornithine decarboxylase low > 75
Serratia liquefaciens MT49 0.57 IAI46_24520 acetylornithine deacetylase 0.78 IAI46_02040 ornithine decarboxylase SpeF low > 86
Klebsiella michiganensis M5al 0.57 BWI76_RS00840 acetylornithine deacetylase 0.69 BWI76_RS24175 ornithine decarboxylase low > 92
Rahnella sp. WP5 0.56 EX31_RS14195 acetylornithine deacetylase 0.72 EX31_RS02805 ornithine decarboxylase SpeF low > 89
Dickeya dianthicola ME23 0.56 DZA65_RS00930 acetylornithine deacetylase 0.68 DZA65_RS05225 ornithine decarboxylase low > 75
Dickeya dianthicola 67-19 0.56 HGI48_RS00870 acetylornithine deacetylase 0.68 HGI48_RS04890 ornithine decarboxylase low > 71
Dickeya dadantii 3937 0.56 DDA3937_RS20355 acetylornithine deacetylase 0.68 DDA3937_RS04870 ornithine decarboxylase low > 74
Pantoea sp. MT58 0.55 IAI47_00900 acetylornithine deacetylase 0.69 IAI47_03545 ornithine decarboxylase low > 76
Erwinia tracheiphila SCR3 0.55 LU632_RS19620 argE acetylornithine deacetylase 0.69 LU632_RS05390 ornithine decarboxylase low > 74
Pseudomonas stutzeri RCH2 0.50 Psest_4001 acetylornithine deacetylase (ArgE) 0.24 Psest_2075 Arginine/lysine/ornithine decarboxylases low > 67
Pseudomonas putida KT2440 0.49 PP_5186 acetylornithine deacetylase 0.24 PP_4140 lysine decarboxylase low > 96
Pseudomonas fluorescens FW300-N1B4 0.49 Pf1N1B4_2242 Acetylornithine deacetylase (EC 3.5.1.16) 0.24 Pf1N1B4_4600 Lysine decarboxylase, inducible (EC 4.1.1.18) low > 87
Pseudomonas fluorescens GW456-L13 0.48 PfGW456L13_912 Acetylornithine deacetylase (EC 3.5.1.16) 0.24 PfGW456L13_3336 Lysine decarboxylase, inducible (EC 4.1.1.18) low > 87
Pseudomonas simiae WCS417 0.48 PS417_27200 acetylornithine deacetylase 0.24 PS417_12240 lysine decarboxylase low > 88
Pseudomonas fluorescens SBW25 0.47 PFLU_RS28860 acetylornithine deacetylase 0.24 PFLU_RS12930 lysine decarboxylase low > 109
Pseudomonas fluorescens SBW25-INTG 0.47 PFLU_RS28860 acetylornithine deacetylase 0.24 PFLU_RS12930 lysine decarboxylase low > 109
Pseudomonas fluorescens FW300-N2E3 0.47 AO353_08690 acetylornithine deacetylase 0.24 AO353_23560 lysine decarboxylase low > 101
Vibrio cholerae E7946 ATCC 55056 0.46 CSW01_13385 acetylornithine deacetylase 0.90 CSW01_19405 ornithine decarboxylase SpeF low > 62
Pseudomonas sp. S08-1 0.46 OH686_11125 acetylornithine deacetylase (ArgE) 0.25 OH686_03560 Lysine decarboxylase, inducible low > 80
Ralstonia solanacearum GMI1000 0.26 RS_RS08270 acetylornithine deacetylase 0.24 RS_RS11875 lysine decarboxylase — —
Paraburkholderia bryophila 376MFSha3.1 0.25 H281DRAFT_04940 acetylornithine deacetylase 0.25 H281DRAFT_00160 ornithine decarboxylase — —
Herbaspirillum seropedicae SmR1 0.25 HSERO_RS13940 acetylornithine deacetylase 0.24 HSERO_RS17280 lysine decarboxylase — —
Burkholderia phytofirmans PsJN 0.25 BPHYT_RS11720 acetylornithine deacetylase 0.24 BPHYT_RS04980 lysine decarboxylase — —
Ralstonia solanacearum UW163 0.24 UW163_RS14760 acetylornithine deacetylase 0.24 UW163_RS09345 lysine decarboxylase — —
Ralstonia solanacearum IBSBF1503 0.24 RALBFv3_RS01450 acetylornithine deacetylase 0.24 RALBFv3_RS04325 lysine decarboxylase — —
Paraburkholderia graminis OAS925 0.24 ABIE53_001520 acetylornithine deacetylase 0.25 ABIE53_001270 arginine decarboxylase — —
Ralstonia solanacearum PSI07 0.24 RPSI07_RS16035 acetylornithine deacetylase 0.24 RPSI07_RS13045 lysine decarboxylase — —
Ralstonia sp. UNC404CL21Col 0.24 ABZR87_RS13245 acetylornithine deacetylase 0.24 ABZR87_RS16180 arginine/lysine/ornithine decarboxylase low > 80
Sinorhizobium meliloti 1021 0.23 SMa1836 acetylornithine deacetylase 0.48 SMa0680 amino acid (ornithine, lysine, arginine) decarboxylase low > 103
Variovorax sp. OAS795 0.23 ABID97_RS04175 acetylornithine deacetylase 0.22 ABID97_RS16535 arginine/lysine/ornithine decarboxylase low > 91
Paraburkholderia sabiae LMG 24235 0.23 QEN71_RS22070 acetylornithine deacetylase 0.46 QEN71_RS33025 ornithine decarboxylase low > 153
Cupriavidus basilensis FW507-4G11 0.23 RR42_RS07840 acetylornithine deacetylase 0.25 RR42_RS15940 lysine decarboxylase — —
Variovorax sp. SCN45 0.23 GFF5006 Uncharacterized deacetylase 0.22 GFF232 Arginine decarboxylase (EC 4.1.1.19); Ornithine decarboxylase (EC 4.1.1.17); Lysine decarboxylase (EC 4.1.1.18) low > 127
Magnetospirillum magneticum AMB-1 0.23 AMB_RS11990 acetylornithine deacetylase 0.41 AMB_RS05630 amino acid decarboxylase low > 64
Acidovorax sp. GW101-3H11 0.23 Ac3H11_4519 Acetylornithine deacetylase (EC 3.5.1.16) 0.24 Ac3H11_2914 Arginine decarboxylase (EC 4.1.1.19); Ornithine decarboxylase (EC 4.1.1.17); Lysine decarboxylase (EC 4.1.1.18) — —
Azospirillum sp. SherDot2 0.22 MPMX19_03397 Acetylornithine deacetylase 0.40 MPMX19_05197 Inducible ornithine decarboxylase low > 112
Rhizobium sp. OAE497 0.22 ABIE40_RS24525 acetylornithine deacetylase 0.48 ABIE40_RS23765 ornithine decarboxylase low > 107
Azospirillum brasilense Sp245 0.20 AZOBR_RS31030 acetylornithine deacetylase 0.39 AZOBR_RS27535 amino acid decarboxylase low > 97

Not shown: 20 genomes with orthologs for Sama_0255 only; 6 genomes with orthologs for Sama_3334 only