Conservation of cofitness between Sama_2008 and Sama_2627 in Shewanella amazonensis SB2B

47 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Shewanella amazonensis SB2B 1.0 Sama_2008 cystathionine beta-lyase (RefSeq) 1.0 Sama_2627 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase (RefSeq) 0.83 11
Shewanella oneidensis MR-1 0.83 SO2191 metC cystathionine beta-lyase (NCBI ptt file) 0.75 SO0818 metE 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (NCBI ptt file) 0.96 7
Shewanella sp. ANA-3 0.82 Shewana3_2414 cystathionine beta-lyase (RefSeq) 0.75 Shewana3_3469 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase (RefSeq) low > 73
Shewanella loihica PV-4 0.82 Shew_1789 cystathionine beta-lyase (RefSeq) 0.70 Shew_2986 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase (RefSeq) low > 60
Vibrio cholerae E7946 ATCC 55056 0.65 CSW01_08400 cystathionine beta-lyase 0.53 CSW01_08575 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase low > 62
Dickeya dadantii 3937 0.55 DDA3937_RS01815 cystathionine beta-lyase 0.56 DDA3937_RS20380 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase low > 74
Dickeya dianthicola 67-19 0.55 HGI48_RS01710 cystathionine beta-lyase 0.56 HGI48_RS00820 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase 0.90 3
Dickeya dianthicola ME23 0.55 DZA65_RS01785 cystathionine beta-lyase 0.56 DZA65_RS00875 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase low > 75
Pectobacterium carotovorum WPP14 0.54 HER17_RS19690 cystathionine beta-lyase 0.56 HER17_RS20685 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase low > 75
Serratia liquefaciens MT49 0.53 IAI46_21725 cystathionine beta-lyase 0.57 IAI46_01035 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase low > 86
Rahnella sp. WP5 0.52 EX31_RS08025 cystathionine beta-lyase 0.56 EX31_RS14710 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase 0.53 4
Escherichia coli ECRC102 0.52 NIAGMN_16725 metC cystathionine beta-lyase 0.56 NIAGMN_12080 metE 5-methyltetrahydropteroyltriglutamate--homocystei ne S-methyltransferase — —
Escherichia coli ECRC101 0.52 MCAODC_09475 metC cystathionine beta-lyase 0.56 MCAODC_04830 metE 5-methyltetrahydropteroyltriglutamate--homocystei ne S-methyltransferase — —
Escherichia coli ECRC99 0.52 KEDOAH_09185 metC cystathionine beta-lyase 0.56 KEDOAH_13825 metE 5-methyltetrahydropteroyltriglutamate--homocystei ne S-methyltransferase — —
Escherichia coli Nissle 1917 0.52 ECOLIN_RS17315 cystathionine beta-lyase 0.56 ECOLIN_RS21980 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase low > 52
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.52 GFF3120 Cystathionine beta-lyase (EC 4.4.1.8) 0.56 GFF254 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase (EC 2.1.1.14) low > 78
Escherichia fergusonii Becca 0.52 EFB2_00802 Cystathionine beta-lyase MetC 0.56 EFB2_04808 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase low > 86
Escherichia coli ECRC98 0.52 JDDGAC_22595 metC cystathionine beta-lyase 0.56 JDDGAC_17950 metE 5-methyltetrahydropteroyltriglutamate--homocystei ne S-methyltransferase — —
Escherichia coli ECRC101 0.52 OKFHMN_18960 metC cystathionine beta-lyase 0.56 OKFHMN_14325 metE 5-methyltetrahydropteroyltriglutamate--homocystei ne S-methyltransferase — —
Escherichia coli ECOR27 0.52 NOLOHH_10735 metC cystathionine beta-lyase 0.56 NOLOHH_06455 metE 5-methyltetrahydropteroyltriglutamate--homocystei ne S-methyltransferase low > 57
Escherichia coli BL21 0.52 ECD_02881 cystathionine beta-lyase, PLP-dependent 0.56 ECD_03708 5-methyltetrahydropteroyltriglutamate- homocysteine S-methyltransferase low > 60
Escherichia coli ECOR38 0.52 HEPCGN_17825 metC cystathionine beta-lyase 0.56 HEPCGN_13025 metE 5-methyltetrahydropteroyltriglutamate--homocystei ne S-methyltransferase low > 85
Escherichia coli HS(pFamp)R (ATCC 700891) 0.52 OHPLBJKB_00693 Cystathionine beta-lyase MetC 0.56 OHPLBJKB_04222 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase low > 73
Escherichia coli ECRC62 0.52 BNILDI_00780 metC cystathionine beta-lyase 0.56 BNILDI_05075 metE 5-methyltetrahydropteroyltriglutamate--homocystei ne S-methyltransferase — —
Escherichia coli BW25113 0.51 b3008 metC cystathionine beta-lyase (NCBI) 0.56 b3829 metE 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase (NCBI) low > 76
Klebsiella michiganensis M5al 0.51 BWI76_RS24285 cystathionine beta-lyase 0.56 BWI76_RS01280 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase low > 92
Enterobacter asburiae PDN3 0.51 EX28DRAFT_3046 cystathionine beta-lyase, bacterial 0.56 EX28DRAFT_4494 methionine synthase (B12-independent) (EC 2.1.1.14) 0.68 41
Enterobacter sp. TBS_079 0.50 MPMX20_03852 Cystathionine beta-lyase MetC 0.56 MPMX20_04451 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase low > 85
Erwinia tracheiphila SCR3 0.49 LU632_RS20545 metC cystathionine beta-lyase 0.55 LU632_RS24030 metE 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase low > 74
Rhodopseudomonas palustris CGA009 0.47 TX73_013235 cystathionine beta-lyase 0.51 TX73_012380 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase low > 86
Pantoea sp. MT58 0.47 IAI47_03215 cystathionine beta-lyase 0.57 IAI47_18310 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase low > 76
Pseudomonas fluorescens FW300-N2E3 0.47 AO353_24330 cystathionine beta-lyase 0.55 AO353_16215 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase low > 101
Rhodospirillum rubrum S1H 0.46 Rru_A1613 Cystathionine beta-lyase (NCBI) 0.48 Rru_A1718 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase (NCBI) low > 58
Azospirillum brasilense Sp245 0.45 AZOBR_RS08650 cystathionine beta-lyase 0.54 AZOBR_RS24275 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase low > 97
Ralstonia sp. UNC404CL21Col 0.44 ABZR87_RS11250 cystathionine beta-lyase 0.54 ABZR87_RS20880 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase low > 80
Variovorax sp. OAS795 0.43 ABID97_RS22430 cystathionine beta-lyase 0.48 ABID97_RS19395 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase low > 91
Variovorax sp. SCN45 0.41 GFF1749 Cystathionine beta-lyase (EC 4.4.1.8) 0.53 GFF795 5-methyltetrahydropteroyltriglutamate--homocystei ne methyltransferase (EC 2.1.1.14) low > 127
Ralstonia solanacearum PSI07 0.39 RPSI07_RS02185 cystathionine beta-lyase 0.55 RPSI07_RS02545 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase low > 81
Ralstonia solanacearum IBSBF1503 0.38 RALBFv3_RS20555 cystathionine beta-lyase 0.53 RALBFv3_RS20320 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase low > 76
Ralstonia solanacearum UW163 0.38 UW163_RS18620 cystathionine beta-lyase 0.53 UW163_RS18855 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase — —
Cupriavidus basilensis FW507-4G11 0.38 RR42_RS30610 cystathionine beta-lyase 0.51 RR42_RS30660 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase low > 128
Paraburkholderia sabiae LMG 24235 0.38 QEN71_RS22165 cystathionine beta-lyase 0.52 QEN71_RS19725 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase low > 153
Caulobacter crescentus NA1000 Δfur 0.37 CCNA_01491 cystathionine beta-lyase 0.50 CCNA_00515 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase 0.72 8
Caulobacter crescentus NA1000 0.37 CCNA_01491 cystathionine beta-lyase 0.50 CCNA_00515 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase low > 66
Burkholderia phytofirmans PsJN 0.36 BPHYT_RS09190 cystathionine beta-lyase 0.53 BPHYT_RS26655 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase low > 109
Castellaniella sp019104865 MT123 0.36 ABCV34_RS12385 PLP-dependent aspartate aminotransferase family protein 0.56 ABCV34_RS04445 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase low > 48
Ralstonia solanacearum GMI1000 0.34 RS_RS08260 cystathionine beta-lyase 0.54 RS_RS20360 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase low > 80
Acidovorax sp. GW101-3H11 0.26 Ac3H11_4146 Cystathionine beta-lyase (EC 4.4.1.8) 0.51 Ac3H11_2345 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase (EC 2.1.1.14) low > 79

Not shown: 14 genomes with orthologs for Sama_2008 only; 20 genomes with orthologs for Sama_2627 only