Conservation of cofitness between b0060 and b2616 in Escherichia coli BW25113

51 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BW25113 1.0 b0060 polB DNA polymerase II (NCBI) 1.0 b2616 recN recombination and repair protein (NCBI) 0.32 14
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_03598 DNA polymerase II 1.00 OHPLBJKB_01091 DNA repair protein RecN low > 73
Escherichia coli BL21 1.00 ECD_00062 DNA polymerase II 1.00 ECD_02504 recombination and repair protein low > 60
Escherichia coli ECOR27 0.99 NOLOHH_03140 polB DNA polymerase II 1.00 NOLOHH_12815 recN DNA repair protein RecN low > 57
Escherichia coli ECRC62 0.99 BNILDI_08465 polB DNA polymerase II 1.00 BNILDI_11620 recN DNA repair protein RecN — —
Escherichia coli ECRC102 0.99 NIAGMN_08645 polB DNA polymerase II 0.99 NIAGMN_18915 recN DNA repair protein RecN — —
Escherichia coli ECRC99 0.99 KEDOAH_17360 polB DNA polymerase II 0.99 KEDOAH_07075 recN DNA repair protein RecN — —
Escherichia coli ECRC101 0.99 MCAODC_01310 polB DNA polymerase II 0.99 MCAODC_11670 recN DNA repair protein RecN — —
Escherichia coli ECRC101 0.99 OKFHMN_10795 polB DNA polymerase II 0.99 OKFHMN_21145 recN DNA repair protein RecN — —
Escherichia coli ECRC98 0.99 JDDGAC_14390 polB DNA polymerase II 0.99 JDDGAC_24810 recN DNA repair protein RecN — —
Escherichia coli ECOR38 0.99 HEPCGN_08785 polB DNA polymerase II 0.99 HEPCGN_20265 recN DNA repair protein RecN low > 85
Escherichia fergusonii Becca 0.98 EFB2_03985 DNA polymerase II 0.99 EFB2_01277 DNA repair protein RecN low > 86
Escherichia coli Nissle 1917 0.98 ECOLIN_RS00320 DNA polymerase II 0.99 ECOLIN_RS14775 DNA repair protein RecN low > 52
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.91 GFF182 DNA polymerase II (EC 2.7.7.7) 0.92 GFF4162 DNA repair protein RecN low > 78
Enterobacter sp. TBS_079 0.88 MPMX20_00754 DNA polymerase II 0.85 MPMX20_03486 DNA repair protein RecN low > 85
Enterobacter asburiae PDN3 0.88 EX28DRAFT_3652 DNA polymerase elongation subunit (family B) 0.86 EX28DRAFT_2719 DNA repair protein RecN low > 76
Klebsiella michiganensis M5al 0.84 BWI76_RS04575 DNA polymerase II 0.84 BWI76_RS21560 DNA repair protein RecN low > 92
Pantoea sp. MT58 0.77 IAI47_16050 DNA polymerase II 0.77 IAI47_04810 DNA repair protein RecN low > 76
Erwinia tracheiphila SCR3 0.77 LU632_RS02810 polB DNA polymerase II 0.73 LU632_RS16985 recN DNA repair protein RecN low > 74
Dickeya dadantii 3937 0.70 DDA3937_RS18230 DNA polymerase II 0.73 DDA3937_RS04325 DNA repair protein RecN low > 74
Rahnella sp. WP5 0.70 EX31_RS03740 DNA polymerase II 0.75 EX31_RS21760 DNA repair protein RecN low > 89
Paraburkholderia graminis OAS925 0.70 ABIE53_004018 DNA polymerase-2 0.35 ABIE53_000856 DNA repair protein RecN (Recombination protein N) low > 113
Burkholderia phytofirmans PsJN 0.70 BPHYT_RS23105 DNA polymerase 0.35 BPHYT_RS03560 DNA repair protein low > 109
Dickeya dianthicola 67-19 0.70 HGI48_RS18165 DNA polymerase II 0.72 HGI48_RS04320 DNA repair protein RecN low > 71
Serratia liquefaciens MT49 0.70 IAI46_03280 DNA polymerase II 0.77 IAI46_19635 DNA repair protein RecN 0.54 32
Dickeya dianthicola ME23 0.69 DZA65_RS19305 DNA polymerase II 0.72 DZA65_RS04235 DNA repair protein RecN low > 75
Paraburkholderia bryophila 376MFSha3.1 0.69 H281DRAFT_01369 DNA damage-inducible DNA polymerase II 0.35 H281DRAFT_04692 DNA replication and repair protein RecN low > 103
Cupriavidus basilensis FW507-4G11 0.69 RR42_RS09335 DNA polymerase II 0.35 RR42_RS05910 DNA repair protein 0.46 10
Pectobacterium carotovorum WPP14 0.69 HER17_RS02995 DNA polymerase II 0.72 HER17_RS17420 DNA repair protein RecN low > 75
Pseudomonas fluorescens FW300-N2C3 0.68 AO356_01325 DNA polymerase II 0.38 AO356_07510 DNA repair protein RecN 0.47 6
Pseudomonas fluorescens FW300-N2E3 0.68 AO353_29350 DNA polymerase II 0.38 AO353_05660 DNA repair protein RecN 0.46 21
Pseudomonas fluorescens FW300-N2E2 0.68 Pf6N2E2_2137 DNA polymerase II (EC 2.7.7.7) 0.39 Pf6N2E2_3370 DNA repair protein RecN 0.19 29
Pseudomonas fluorescens GW456-L13 0.68 PfGW456L13_2472 DNA polymerase II (EC 2.7.7.7) 0.40 PfGW456L13_5106 DNA repair protein RecN low > 87
Pseudomonas syringae pv. syringae B728a 0.67 Psyr_2361 DNA damage-inducible DNA polymerase II 0.38 Psyr_4197 DNA replication and repair protein RecN low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.67 Psyr_2361 DNA damage-inducible DNA polymerase II 0.38 Psyr_4197 DNA replication and repair protein RecN low > 86
Pseudomonas sp. RS175 0.67 PFR28_01299 DNA polymerase II 0.39 PFR28_00071 DNA repair protein RecN low > 88
Paraburkholderia sabiae LMG 24235 0.67 QEN71_RS13385 DNA polymerase II 0.37 QEN71_RS26535 DNA repair protein RecN low > 153
Pseudomonas fluorescens FW300-N1B4 0.67 Pf1N1B4_87 DNA polymerase II (EC 2.7.7.7) 0.39 Pf1N1B4_1178 DNA repair protein RecN low > 87
Pseudomonas putida KT2440 0.67 PP_2393 DNA polymerase II 0.37 PP_4729 factor used in recombination and DNA repair low > 96
Pseudomonas simiae WCS417 0.67 PS417_09565 DNA polymerase II 0.39 PS417_24070 recombination and repair protein 0.21 36
Pseudomonas sp. S08-1 0.66 OH686_16850 DNA polymerase II 0.39 OH686_17050 DNA repair protein RecN low > 80
Pseudomonas stutzeri RCH2 0.66 Psest_1519 DNA polymerase elongation subunit (family B) 0.38 Psest_0962 DNA repair protein RecN 0.35 3
Pseudomonas fluorescens SBW25-INTG 0.65 PFLU_RS10185 DNA polymerase II 0.38 PFLU_RS25910 DNA repair protein RecN low > 109
Pseudomonas fluorescens SBW25 0.65 PFLU_RS10185 DNA polymerase II 0.38 PFLU_RS25910 DNA repair protein RecN low > 109
Herbaspirillum seropedicae SmR1 0.62 HSERO_RS12200 DNA polymerase II 0.38 HSERO_RS03060 DNA repair protein low > 78
Variovorax sp. SCN45 0.55 GFF7213 DNA polymerase II (EC 2.7.7.7) 0.32 GFF2357 DNA repair protein RecN low > 127
Vibrio cholerae E7946 ATCC 55056 0.50 CSW01_06130 DNA polymerase II 0.53 CSW01_04395 DNA repair protein RecN low > 62
Shewanella amazonensis SB2B 0.40 Sama_1250 DNA polymerase II (RefSeq) 0.54 Sama_1026 recombination and repair protein (RefSeq) 0.69 1
Alteromonas macleodii MIT1002 0.40 MIT1002_03358 DNA polymerase II 0.43 MIT1002_01443 Recombination protein N low > 70
Shewanella loihica PV-4 0.38 Shew_2482 DNA polymerase II (RefSeq) 0.53 Shew_1196 recombination and repair protein (RefSeq) 0.58 17
Shewanella oneidensis MR-1 0.38 SO1820 polB DNA polymerase II (NCBI ptt file) 0.55 SO3462 recN DNA repair protein RecN (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.37 Shewana3_2629 DNA polymerase II (RefSeq) 0.55 Shewana3_1104 recombination and repair protein (RefSeq) low > 73

Not shown: 0 genomes with orthologs for b0060 only; 48 genomes with orthologs for b2616 only