Conservation of cofitness between b0060 and b3813 in Escherichia coli BW25113

50 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BW25113 1.0 b0060 polB DNA polymerase II (NCBI) 1.0 b3813 uvrD DNA-dependent ATPase I and helicase II (NCBI) 0.37 13
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_03598 DNA polymerase II 1.00 OHPLBJKB_04237 DNA helicase II low > 73
Escherichia coli BL21 1.00 ECD_00062 DNA polymerase II 1.00 ECD_03689 DNA-dependent ATPase I and helicase II — —
Escherichia coli ECOR27 0.99 NOLOHH_03140 polB DNA polymerase II 1.00 NOLOHH_06540 uvrD DNA helicase II low > 57
Escherichia coli ECRC62 0.99 BNILDI_08465 polB DNA polymerase II 1.00 BNILDI_04995 uvrD DNA helicase II — —
Escherichia coli ECRC101 0.99 OKFHMN_10795 polB DNA polymerase II 1.00 OKFHMN_14410 uvrD DNA helicase II — —
Escherichia coli ECRC101 0.99 MCAODC_01310 polB DNA polymerase II 1.00 MCAODC_04915 uvrD DNA helicase II — —
Escherichia coli ECRC102 0.99 NIAGMN_08645 polB DNA polymerase II 1.00 NIAGMN_12165 uvrD DNA helicase II — —
Escherichia coli ECRC98 0.99 JDDGAC_14390 polB DNA polymerase II 1.00 JDDGAC_18035 uvrD DNA helicase II — —
Escherichia coli ECRC99 0.99 KEDOAH_17360 polB DNA polymerase II 1.00 KEDOAH_13740 uvrD DNA helicase II — —
Escherichia coli ECOR38 0.99 HEPCGN_08785 polB DNA polymerase II 1.00 HEPCGN_13115 uvrD DNA helicase II low > 85
Escherichia fergusonii Becca 0.98 EFB2_03985 DNA polymerase II 1.00 EFB2_04824 DNA helicase II low > 86
Escherichia coli Nissle 1917 0.98 ECOLIN_RS00320 DNA polymerase II 1.00 ECOLIN_RS21885 DNA helicase II low > 52
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.91 GFF182 DNA polymerase II (EC 2.7.7.7) 0.99 GFF241 ATP-dependent DNA helicase UvrD/PcrA low > 78
Enterobacter sp. TBS_079 0.88 MPMX20_00754 DNA polymerase II 0.97 MPMX20_04463 DNA helicase II low > 85
Enterobacter asburiae PDN3 0.88 EX28DRAFT_3652 DNA polymerase elongation subunit (family B) 0.97 EX28DRAFT_4482 ATP-dependent DNA helicase UvrD (EC 3.6.1.-) low > 76
Klebsiella michiganensis M5al 0.84 BWI76_RS04575 DNA polymerase II 0.98 BWI76_RS01220 DNA-dependent helicase II low > 92
Pantoea sp. MT58 0.77 IAI47_16050 DNA polymerase II 0.89 IAI47_18390 DNA helicase II low > 76
Erwinia tracheiphila SCR3 0.77 LU632_RS02810 polB DNA polymerase II 0.90 LU632_RS24125 uvrD DNA helicase II — —
Dickeya dadantii 3937 0.70 DDA3937_RS18230 DNA polymerase II 0.89 DDA3937_RS19880 DNA helicase II low > 74
Rahnella sp. WP5 0.70 EX31_RS03740 DNA polymerase II 0.87 EX31_RS15175 DNA helicase II low > 89
Paraburkholderia graminis OAS925 0.70 ABIE53_004018 DNA polymerase-2 0.44 ABIE53_002936 DNA helicase-2/ATP-dependent DNA helicase PcrA — —
Burkholderia phytofirmans PsJN 0.70 BPHYT_RS23105 DNA polymerase 0.44 BPHYT_RS13840 DNA-dependent helicase — —
Dickeya dianthicola 67-19 0.70 HGI48_RS18165 DNA polymerase II 0.89 HGI48_RS20035 DNA helicase II low > 71
Serratia liquefaciens MT49 0.70 IAI46_03280 DNA polymerase II 0.89 IAI46_00735 DNA helicase II 0.66 17
Dickeya dianthicola ME23 0.69 DZA65_RS19305 DNA polymerase II 0.89 DZA65_RS21080 DNA helicase II low > 75
Paraburkholderia bryophila 376MFSha3.1 0.69 H281DRAFT_01369 DNA damage-inducible DNA polymerase II 0.44 H281DRAFT_04469 ATP-dependent DNA helicase UvrD — —
Cupriavidus basilensis FW507-4G11 0.69 RR42_RS09335 DNA polymerase II 0.42 RR42_RS15090 DNA helicase 0.42 12
Pectobacterium carotovorum WPP14 0.69 HER17_RS02995 DNA polymerase II 0.91 HER17_RS01360 DNA helicase II low > 75
Pseudomonas fluorescens FW300-N2C3 0.68 AO356_01325 DNA polymerase II 0.62 AO356_11990 DNA helicase II 0.33 19
Pseudomonas fluorescens FW300-N2E3 0.68 AO353_29350 DNA polymerase II 0.62 AO353_10055 DNA helicase II 0.29 84
Pseudomonas fluorescens FW300-N2E2 0.68 Pf6N2E2_2137 DNA polymerase II (EC 2.7.7.7) 0.62 Pf6N2E2_4273 ATP-dependent DNA helicase UvrD/PcrA 0.24 19
Pseudomonas fluorescens GW456-L13 0.68 PfGW456L13_2472 DNA polymerase II (EC 2.7.7.7) 0.62 PfGW456L13_724 ATP-dependent DNA helicase UvrD/PcrA low > 87
Pseudomonas syringae pv. syringae B728a ΔmexB 0.67 Psyr_2361 DNA damage-inducible DNA polymerase II 0.61 Psyr_5065 ATP-dependent DNA helicase UvrD low > 86
Pseudomonas syringae pv. syringae B728a 0.67 Psyr_2361 DNA damage-inducible DNA polymerase II 0.61 Psyr_5065 ATP-dependent DNA helicase UvrD low > 86
Pseudomonas sp. RS175 0.67 PFR28_01299 DNA polymerase II 0.62 PFR28_04523 DNA helicase II low > 88
Paraburkholderia sabiae LMG 24235 0.67 QEN71_RS13385 DNA polymerase II 0.43 QEN71_RS05110 3'-5' exonuclease — —
Pseudomonas fluorescens FW300-N1B4 0.67 Pf1N1B4_87 DNA polymerase II (EC 2.7.7.7) 0.61 Pf1N1B4_2005 ATP-dependent DNA helicase UvrD/PcrA 0.29 60
Pseudomonas putida KT2440 0.67 PP_2393 DNA polymerase II 0.62 PP_5352 DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex low > 96
Pseudomonas sp. S08-1 0.66 OH686_16850 DNA polymerase II 0.60 OH686_13045 ATP-dependent DNA helicase UvrD/PcrA low > 80
Pseudomonas stutzeri RCH2 0.66 Psest_1519 DNA polymerase elongation subunit (family B) 0.61 Psest_4098 Superfamily I DNA and RNA helicases 0.19 63
Pseudomonas fluorescens SBW25-INTG 0.65 PFLU_RS10185 DNA polymerase II 0.62 PFLU_RS29900 DNA helicase II low > 109
Pseudomonas fluorescens SBW25 0.65 PFLU_RS10185 DNA polymerase II 0.62 PFLU_RS29900 DNA helicase II low > 109
Herbaspirillum seropedicae SmR1 0.62 HSERO_RS12200 DNA polymerase II 0.43 HSERO_RS02160 DNA-dependent helicase low > 78
Variovorax sp. SCN45 0.55 GFF7213 DNA polymerase II (EC 2.7.7.7) 0.41 GFF4000 ATP-dependent DNA helicase UvrD/PcrA (EC 3.6.4.12) low > 127
Vibrio cholerae E7946 ATCC 55056 0.50 CSW01_06130 DNA polymerase II 0.71 CSW01_01015 DNA helicase II low > 62
Shewanella amazonensis SB2B 0.40 Sama_1250 DNA polymerase II (RefSeq) 0.71 Sama_0419 uvrD DNA-dependent helicase II (RefSeq) low > 62
Alteromonas macleodii MIT1002 0.40 MIT1002_03358 DNA polymerase II 0.67 MIT1002_00153 DNA helicase II low > 70
Shewanella loihica PV-4 0.38 Shew_2482 DNA polymerase II (RefSeq) 0.72 Shew_3385 uvrD DNA-dependent helicase II (RefSeq) 0.45 27
Shewanella oneidensis MR-1 0.38 SO1820 polB DNA polymerase II (NCBI ptt file) 0.72 SO0467 uvrD DNA helicase II (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.37 Shewana3_2629 DNA polymerase II (RefSeq) 0.72 Shewana3_0469 uvrD DNA-dependent helicase II (RefSeq) low > 73

Not shown: 1 genomes with orthologs for b0060 only; 41 genomes with orthologs for b3813 only