Conservation of cofitness between b3564 and b3565 in Escherichia coli BW25113

54 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BW25113 1.0 b3564 xylB xylulokinase (NCBI) 1.0 b3565 xylA xylose isomerase (NCBI) 0.79 1
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_00140 Xylulose kinase 1.00 OHPLBJKB_00139 Xylose isomerase low > 73
Escherichia coli BL21 1.00 ECD_03416 xylulokinase 1.00 ECD_03417 D-xylose isomerase low > 60
Escherichia coli ECOR27 0.99 NOLOHH_07905 xylB xylulokinase 1.00 NOLOHH_07900 xylA xylose isomerase low > 57
Escherichia coli ECRC98 0.99 JDDGAC_19590 xylB xylulokinase 0.99 JDDGAC_19585 xylA xylose isomerase — —
Escherichia coli ECRC102 0.99 NIAGMN_13720 xylB xylulokinase 0.99 NIAGMN_13715 xylA xylose isomerase — —
Escherichia coli ECRC101 0.99 OKFHMN_15960 xylB xylulokinase 0.99 OKFHMN_15955 xylA xylose isomerase — —
Escherichia coli ECRC101 0.99 MCAODC_06475 xylB xylulokinase 0.99 MCAODC_06470 xylA xylose isomerase — —
Escherichia coli ECRC99 0.99 KEDOAH_12190 xylB xylulokinase 0.99 KEDOAH_12195 xylA xylose isomerase — —
Escherichia coli ECRC62 0.99 BNILDI_03640 xylB xylulokinase 1.00 BNILDI_03645 xylA xylose isomerase — —
Escherichia fergusonii Becca 0.99 EFB2_00243 Xylulose kinase 1.00 EFB2_00242 Xylose isomerase low > 86
Escherichia coli ECOR38 0.98 HEPCGN_14845 xylB xylulokinase 1.00 HEPCGN_14840 xylA xylose isomerase low > 85
Escherichia coli Nissle 1917 0.98 ECOLIN_RS20385 xylulokinase 1.00 ECOLIN_RS20390 xylose isomerase low > 52
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.84 GFF445 Xylulose kinase (EC 2.7.1.17) 0.94 GFF444 Xylose isomerase (EC 5.3.1.5) low > 78
Klebsiella michiganensis M5al 0.81 BWI76_RS27020 Xylulose kinase (EC 2.7.1.17) (from data) 0.93 BWI76_RS27025 Xylose isomerase (EC 5.3.1.5) (from data) 0.49 1
Enterobacter sp. TBS_079 0.80 MPMX20_00166 Xylulose kinase 0.94 MPMX20_00165 Xylose isomerase 0.95 1
Enterobacter asburiae PDN3 0.80 EX28DRAFT_3829 D-xylulose kinase 0.93 EX28DRAFT_3830 xylose isomerase low > 76
Pectobacterium carotovorum WPP14 0.73 HER17_RS21090 xylulokinase 0.85 HER17_RS21085 xylose isomerase low > 75
Rahnella sp. WP5 0.72 EX31_RS09770 xylulokinase 0.87 EX31_RS09765 xylose isomerase 0.87 1
Dickeya dadantii 3937 0.71 DDA3937_RS20940 xylulokinase 0.85 DDA3937_RS20935 xylose isomerase low > 74
Serratia liquefaciens MT49 0.70 IAI46_00275 xylulokinase 0.87 IAI46_00280 xylose isomerase low > 86
Dickeya dianthicola 67-19 0.68 HGI48_RS00305 xylulokinase 0.84 HGI48_RS00310 xylose isomerase low > 71
Dickeya dianthicola ME23 0.67 DZA65_RS00300 xylulokinase 0.85 DZA65_RS00310 xylose isomerase low > 75
Pantoea sp. MT58 0.67 IAI47_00200 xylulokinase 0.85 IAI47_00195 xylose isomerase 0.41 2
Burkholderia phytofirmans PsJN 0.52 BPHYT_RS16080 xylulokinase 0.68 BPHYT_RS32825 Xylose isomerase (EC 5.3.1.5) (from data) 0.32 28
Paraburkholderia graminis OAS925 0.51 ABIE53_003390 xylulokinase 0.68 ABIE53_004929 xylose isomerase low > 113
Dyella japonica UNC79MFTsu3.2 0.51 ABZR86_RS14425 xylulokinase 0.68 ABZR86_RS14430 xylose isomerase low > 74
Paraburkholderia bryophila 376MFSha3.1 0.51 H281DRAFT_04153 xylulokinase 0.69 H281DRAFT_03876 D-xylose isomerase low > 103
Paraburkholderia sabiae LMG 24235 0.51 QEN71_RS02625 xylulokinase 0.69 QEN71_RS25875 xylose isomerase 0.50 11
Sinorhizobium meliloti 1021 0.44 SMc03164 Xylulose kinase (EC 2.7.1.17) (from data) 0.62 SMc03163 Xylose isomerase (EC 5.3.1.5) (from data) 0.94 1
Rhizobium sp. OAE497 0.44 ABIE40_RS16815 xylulokinase 0.63 ABIE40_RS16810 xylose isomerase 0.58 1
Agrobacterium fabrum C58 0.43 Atu4482 xylulokinase 0.61 Atu4483 xylose isomerase 0.85 1
Dinoroseobacter shibae DFL-12 0.41 Dshi_1997 Xylulose kinase (EC 2.7.1.17) (from data) 0.59 Dshi_1996 xylose isomerase (RefSeq) low > 64
Azospirillum sp. SherDot2 0.41 MPMX19_03030 Xylulose kinase 0.60 MPMX19_03029 Xylose isomerase low > 112
Pseudomonas simiae WCS417 0.40 PS417_13655 xylulose kinase 0.68 PS417_10945 Xylose isomerase (EC 5.3.1.5) (from data) low > 88
Pseudomonas fluorescens SBW25 0.40 PFLU_RS15190 xylulokinase 0.68 PFLU_RS11305 xylose isomerase low > 109
Pseudomonas fluorescens SBW25-INTG 0.40 PFLU_RS15190 xylulokinase 0.68 PFLU_RS11305 xylose isomerase low > 109
Phaeobacter inhibens DSM 17395 0.37 PGA1_c14010 Xylulose kinase (EC 2.7.1.17) (from data) 0.59 PGA1_c14000 Xylose isomerase (EC 5.3.1.5) (from data) 0.74 1
Bacteroides thetaiotaomicron VPI-5482 0.24 BT4423 xylulose kinase (NCBI ptt file) 0.47 BT0793 xylose isomerase (NCBI ptt file) low > 81
Pseudomonas syringae pv. syringae B728a 0.23 Psyr_2435 Xylulokinase 0.69 Psyr_2883 D-xylose isomerase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.23 Psyr_2435 Xylulokinase 0.69 Psyr_2883 D-xylose isomerase low > 86
Xanthomonas campestris pv. campestris strain 8004 0.23 Xcc-8004.3065.1 Xylulose kinase (EC 2.7.1.17) 0.52 Xcc-8004.5213.1 Xylose isomerase (EC 5.3.1.5) low > 74
Pseudomonas sp. RS175 0.22 PFR28_01708 Xylulose kinase 0.69 PFR28_02348 Xylose isomerase 0.56 9
Pseudomonas fluorescens FW300-N2C3 0.22 AO356_27695 Xylulose kinase (EC 2.7.1.17) (from data) 0.66 AO356_28500 Xylose isomerase (EC 5.3.1.5) (from data) 0.78 2
Lysobacter sp. OAE881 0.22 ABIE51_RS03610 xylulokinase 0.48 ABIE51_RS03615 xylose isomerase 0.80 1
Pseudomonas fluorescens FW300-N2E2 0.22 Pf6N2E2_805 Xylulose kinase (EC 2.7.1.17) (from data) 0.69 Pf6N2E2_1454 Xylose isomerase (EC 5.3.1.5) low > 103
Pedobacter sp. GW460-11-11-14-LB5 0.19 CA265_RS19710 carbohydrate kinase 0.47 CA265_RS19715 xylose isomerase 0.42 3
Mucilaginibacter yixingensis YX-36 DSM 26809 0.18 ABZR88_RS16155 xylulokinase 0.48 ABZR88_RS16150 xylose isomerase 0.89 1
Echinicola vietnamensis KMM 6221, DSM 17526 0.17 Echvi_1875 xylulokinase (EC 2.7.1.17) (from data) 0.51 Echvi_1876 Xylose isomerase (EC 5.3.1.5) (from data) 0.87 1
Bacteroides ovatus ATCC 8483 0.17 BACOVA_02533 carbohydrate kinase, FGGY family protein 0.47 BACOVA_02534 xylose isomerase 0.98 1
Pontibacter actiniarum KMM 6156, DSM 19842 0.17 CA264_13995 carbohydrate kinase 0.50 CA264_14000 xylose isomerase 0.72 4
Bacteroides stercoris CC31F 0.17 HMPREF1181_RS14650 xylulokinase 0.49 HMPREF1181_RS14645 xylose isomerase 0.95 2
Parabacteroides merdae CL09T00C40 0.17 HMPREF1078_RS00450 FGGY family carbohydrate kinase 0.47 HMPREF1078_RS00455 xylose isomerase 0.96 2
Phocaeicola vulgatus CL09T03C04 0.16 HMPREF1058_RS06655 carbohydrate kinase 0.46 HMPREF1058_RS06650 xylose isomerase 0.91 1
Phocaeicola dorei CL03T12C01 0.16 ABI39_RS20450 carbohydrate kinase 0.46 ABI39_RS20445 xylose isomerase 0.97 1

Not shown: 14 genomes with orthologs for b3564 only; 1 genomes with orthologs for b3565 only