Conservation of cofitness between b3823 and b3365 in Escherichia coli BW25113

58 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BW25113 1.0 b3823 rhtC threonine efflux system (NCBI) 1.0 b3365 nirB nitrite reductase, large subunit, NAD(P)H-binding (NCBI) 0.15 4
Escherichia coli ECRC100 1.00 OKFHMN_14355 rhtC threonine export protein RhtC 1.00 OKFHMN_17195 nirB NADPH-nitrite reductase large subunit low > 79
Escherichia coli ECRC98 1.00 JDDGAC_17980 rhtC threonine export protein RhtC 1.00 JDDGAC_20825 nirB NADPH-nitrite reductase large subunit low > 87
Escherichia coli ECRC102 1.00 NIAGMN_12110 rhtC threonine export protein RhtC 1.00 NIAGMN_14965 nirB NADPH-nitrite reductase large subunit low > 80
Escherichia coli ECRC101 1.00 MCAODC_04860 rhtC threonine export protein RhtC 1.00 MCAODC_07725 nirB NADPH-nitrite reductase large subunit low > 88
Escherichia coli ECRC99 1.00 KEDOAH_13795 rhtC threonine export protein RhtC 1.00 KEDOAH_10945 nirB NADPH-nitrite reductase large subunit — —
Escherichia coli ECOR27 1.00 NOLOHH_06485 rhtC threonine export protein RhtC 1.00 NOLOHH_08995 nirB NADPH-nitrite reductase large subunit low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_04228 Threonine efflux protein 1.00 OHPLBJKB_00337 Nitrite reductase [NAD(P)H] low > 74
Escherichia coli ECOR38 1.00 HEPCGN_13055 rhtC threonine export protein RhtC 1.00 HEPCGN_16025 nirB NADPH-nitrite reductase large subunit low > 88
Escherichia coli BL21 1.00 ECD_03702 threonine efflux pump 1.00 ECD_03216 nitrite reductase, large subunit, NAD(P)H-binding low > 61
Escherichia fergusonii Becca 0.99 EFB2_04814 Threonine efflux protein 1.00 EFB2_00457 Nitrite reductase [NAD(P)H] low > 86
Escherichia coli Nissle 1917 0.99 ECOLIN_RS21940 threonine export protein RhtC 1.00 ECOLIN_RS19270 NADPH-nitrite reductase large subunit low > 55
Escherichia coli ECRC62 0.99 BNILDI_05045 rhtC threonine export protein RhtC 1.00 BNILDI_02525 nirB NADPH-nitrite reductase large subunit low > 75
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.93 GFF249 L-lysine permease 0.93 GFF3704 Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4) low > 78
Klebsiella pneumoniae MKP103 0.89 KDGMDA_09740 threonine export protein RhtC 0.93 KDGMDA_06870 nitrite reductase (NAD(P)H) low > 95
Klebsiella michiganensis M5al 0.88 BWI76_RS01250 threonine export protein RhtC 0.95 BWI76_RS26040 nitrite reductase large subunit low > 92
Enterobacter asburiae PDN3 0.87 EX28DRAFT_4488 The Resistance to Homoserine/Threonine (RhtB) Family protein 0.93 EX28DRAFT_4162 nitrite reductase [NAD(P)H], large subunit low > 76
Enterobacter sp. TBS_079 0.84 MPMX20_04457 Threonine efflux protein 0.92 MPMX20_04269 Nitrite reductase [NAD(P)H] low > 85
Serratia liquefaciens MT49 0.78 IAI46_00775 threonine export protein RhtC 0.84 IAI46_23655 nitrite reductase large subunit low > 86
Pantoea agglomerans CFBP13505 P0401 0.74 PagCFBP13505_RS15335 threonine export protein RhtC 0.80 PagCFBP13505_RS21660 nitrite reductase large subunit low > 74
Rahnella sp. WP5 0.74 EX31_RS15215 threonine export protein RhtC 0.83 EX31_RS04670 nitrite reductase large subunit low > 89
Pectobacterium carotovorum WPP14 0.72 HER17_RS01400 threonine export protein RhtC 0.84 HER17_RS01845 nitrite reductase large subunit NirB low > 75
Dyella japonica UNC79MFTsu3.2 0.58 ABZR86_RS11510 homoserine/threonine efflux transporter 0.60 ABZR86_RS03855 Nitrite reductase (NAD(P)H) (EC 1.7.1.4) (from data) low > 74
Acinetobacter baumannii LAC-4 0.56 RR41_RS14900 threonine export protein RhtC 0.60 RR41_RS07880 nitrite reductase large subunit NirB low > 55
Acinetobacter radioresistens SK82 0.50 MPMX26_00309 Threonine efflux protein 0.60 MPMX26_01574 Nitrite reductase [NAD(P)H] — —
Pseudomonas syringae pv. syringae B728a 0.31 Psyr_2743 Lysine exporter protein (LYSE/YGGA) 0.56 Psyr_3099 assimilatory nitrite reductase (NAD(P)H) large subunit precursor low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.31 Psyr_2743 Lysine exporter protein (LYSE/YGGA) 0.56 Psyr_3099 assimilatory nitrite reductase (NAD(P)H) large subunit precursor — —
Paraburkholderia sabiae LMG 24235 0.28 QEN71_RS00520 LysE family transporter 0.63 QEN71_RS37810 nitrite reductase large subunit NirB low > 153
Pseudomonas stutzeri RCH2 0.27 Psest_3222 Putative threonine efflux protein 0.56 Psest_2406 nitrite reductase [NAD(P)H], large subunit low > 67
Paraburkholderia bryophila 376MFSha3.1 0.27 H281DRAFT_03862 Threonine/homoserine/homoserine lactone efflux protein 0.62 H281DRAFT_00967 assimilatory nitrite reductase (NAD(P)H) large subunit precursor (EC 1.7.1.4) low > 103
Paraburkholderia graminis OAS925 0.27 ABIE53_004917 threonine/homoserine/homoserine lactone efflux protein 0.63 ABIE53_002205 nitrite reductase (NADH) large subunit low > 113
Pseudomonas fluorescens FW300-N2C3 0.27 AO356_06930 lysine transporter LysE 0.56 AO356_26200 nitrite reductase low > 104
Burkholderia phytofirmans PsJN 0.27 BPHYT_RS33475 threonine transporter 0.63 BPHYT_RS09840 nitrite reductase low > 109
Pseudomonas fluorescens GW456-L13 0.26 PfGW456L13_1618 L-lysine permease 0.26 PfGW456L13_4101 Nitrite reductase (NAD(P)H) (EC 1.7.1.4) (from data) low > 87
Pseudomonas fluorescens FW300-N2E2 0.26 Pf6N2E2_3245 L-lysine permease 0.56 Pf6N2E2_1114 Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4) 0.15 94
Pseudomonas lactucae CFBP13502 0.26 GEMAOFIL_01110 Threonine efflux protein 0.54 GEMAOFIL_03263 Nitrite reductase [NAD(P)H] low > 93
Pseudomonas sp. DMC3 0.26 GFF4453 Threonine efflux protein 0.26 GFF5247 Nitrite reductase [NAD(P)H] low > 89
Pseudomonas fluorescens SBW25-INTG 0.26 PFLU_RS04580 lysine transporter LysE 0.55 PFLU_RS16715 nitrite reductase large subunit low > 109
Pseudomonas fluorescens SBW25 0.26 PFLU_RS04580 lysine transporter LysE 0.55 PFLU_RS16715 nitrite reductase large subunit low > 109
Rhizobium sp. OAE497 0.26 ABIE40_RS00900 LysE family translocator 0.27 ABIE40_RS25560 nitrite reductase large subunit NirB low > 107
Pseudomonas simiae WCS417 0.26 PS417_04535 lysine transporter LysE 0.55 PS417_14730 Nitrite reductase (NAD(P)H) (EC 1.7.1.4) (from data) low > 88
Pseudomonas sp. RS175 0.26 PFR28_03621 Threonine efflux protein 0.56 PFR28_01856 Nitrite reductase [NAD(P)H] low > 88
Pseudomonas fluorescens FW300-N2E3 0.25 AO353_15005 lysine transporter LysE 0.25 AO353_00805 Nitrite reductase (NAD(P)H) (EC 1.7.1.4) (from data) low > 101
Pseudomonas segetis P6 0.25 MPMX49_03706 Threonine efflux protein 0.56 MPMX49_02119 Nitrite reductase [NAD(P)H] low > 75
Pseudomonas fluorescens FW300-N1B4 0.25 Pf1N1B4_2955 L-lysine permease 0.55 Pf1N1B4_5042 Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4) low > 87
Pseudomonas sp. S08-1 0.25 OH686_06335 L-lysine permease 0.57 OH686_20575 Nitrite reductase [NAD(P)H] large subunit low > 80
Pseudomonas sp. SVBP6 0.24 COO64_RS03395 LysE family translocator 0.56 COO64_RS07075 nirB nitrite reductase large subunit NirB low > 93
Pseudomonas aeruginosa PA14 0.22 IKLFDK_14880 amino acid transporter 0.26 IKLFDK_08610 nitrite reductase large subunit low > 100
Variovorax sp. SCN45 0.22 GFF6288 L-lysine permease 0.26 GFF4734 Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4) low > 127
Sinorhizobium meliloti 1021 0.22 SMc02484 amino acid efflux transmembrane protein 0.28 SM_b20984 Nitrite reductase (NAD(P)H) (EC 1.7.1.4) (from data) low > 103
Alteromonas macleodii MIT1002 0.22 MIT1002_02144 Threonine efflux protein 0.60 MIT1002_00698 Nitrite reductase [NAD(P)H] low > 70
Agrobacterium fabrum C58 0.21 Atu2633 RhtB family transporter 0.25 Atu3902 nitrite reductase large subunit low > 89
Marinobacter adhaerens HP15 0.21 HP15_2657 threonine efflux protein 0.57 HP15_3880 nitrite reductase (NAD(P)H), large subunit — —
Azospirillum brasilense Sp245 0.19 AZOBR_RS14545 threonine transporter 0.29 AZOBR_RS18565 Nitrite reductase (NAD(P)H) (EC 1.7.1.4) (from data) low > 97
Dinoroseobacter shibae DFL-12 0.18 Dshi_1792 Lysine exporter protein (LYSE/YGGA) (RefSeq) 0.28 Dshi_1667 Nitrite reductase (NAD(P)H) (EC 1.7.1.4) (from data) low > 64
Sphingobium sp. HT1-2 0.18 GFF4561 Transporter, LysE family 0.29 GFF1183 Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4) low > 95
Caulobacter crescentus NA1000 0.18 CCNA_00488 amino acid efflux permease 0.26 CCNA_00651 Nitrite reductase (NAD(P)H) (EC 1.7.1.4) (from data) low > 66
Caulobacter crescentus NA1000 Δfur 0.18 CCNA_00488 amino acid efflux permease 0.26 CCNA_00651 nitrite reductase (NAD(P)H) catalytic subunit low > 67
Pseudomonas sp. BP01 0.17 JOY50_RS19740 LysE family translocator 0.56 JOY50_RS27810 nirB nitrite reductase large subunit NirB — —

Not shown: 15 genomes with orthologs for b3823 only; 22 genomes with orthologs for b3365 only