Conservation of cofitness between b2290 and b2479 in Escherichia coli BW25113

49 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BW25113 1.0 b2290 yfbQ aspartate aminotransferase (NCBI) 1.0 b2479 gcvR transcriptional regulation of gcv operon (VIMSS) 0.63 6
Escherichia coli Nissle 1917 1.00 ECOLIN_RS13295 alanine transaminase AlaA 1.00 ECOLIN_RS14150 glycine cleavage system transcriptional repressor low > 52
Escherichia coli ECRC62 1.00 BNILDI_13365 alaA alanine transaminase AlaA 1.00 BNILDI_12380 gcvR glycine cleavage system transcriptional repressor — —
Escherichia coli ECOR38 1.00 HEPCGN_22030 alaA alanine transaminase AlaA 1.00 HEPCGN_21080 gcvR glycine cleavage system transcriptional repressor low > 85
Escherichia fergusonii Becca 1.00 EFB2_01568 Glutamate-pyruvate aminotransferase AlaA 1.00 EFB2_01407 Glycine cleavage system transcriptional repressor low > 86
Escherichia coli BL21 1.00 ECD_02215 glutamate-pyruvate aminotransferase; glutamic-pyruvic transaminase (GPT); alanine transaminase 1.00 ECD_02371 transcriptional repressor, regulatory protein accessory to GcvA low > 60
Escherichia coli ECOR27 1.00 NOLOHH_14445 alaA alanine transaminase AlaA 1.00 NOLOHH_13570 gcvR glycine cleavage system transcriptional repressor low > 57
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_01415 Glutamate-pyruvate aminotransferase AlaA 1.00 OHPLBJKB_01250 Glycine cleavage system transcriptional repressor low > 73
Escherichia coli ECRC101 1.00 MCAODC_13865 alaA alanine transaminase AlaA 1.00 MCAODC_12440 gcvR glycine cleavage system transcriptional repressor — —
Escherichia coli ECRC99 1.00 KEDOAH_05370 alaA alanine transaminase AlaA 1.00 KEDOAH_06310 gcvR glycine cleavage system transcriptional repressor — —
Escherichia coli ECRC101 1.00 OKFHMN_22825 alaA alanine transaminase AlaA 1.00 OKFHMN_21910 gcvR glycine cleavage system transcriptional repressor — —
Escherichia coli ECRC98 1.00 JDDGAC_26790 alaA alanine transaminase AlaA 1.00 JDDGAC_25855 gcvR glycine cleavage system transcriptional repressor — —
Escherichia coli ECRC102 1.00 NIAGMN_20595 alaA alanine transaminase AlaA 1.00 NIAGMN_19680 gcvR glycine cleavage system transcriptional repressor — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.97 GFF1894 Aspartate aminotransferase (EC 2.6.1.1) 0.91 GFF2179 Glycine cleavage system transcriptional antiactivator GcvR low > 78
Klebsiella michiganensis M5al 0.97 BWI76_RS20205 aminotransferase AlaT 0.84 BWI76_RS20910 glycine cleavage system transcriptional repressor low > 92
Enterobacter asburiae PDN3 0.97 EX28DRAFT_0319 Aspartate/tyrosine/aromatic aminotransferase 0.86 EX28DRAFT_0181 Glycine cleavage system regulatory protein low > 76
Enterobacter sp. TBS_079 0.96 MPMX20_03220 Glutamate-pyruvate aminotransferase AlaA 0.87 MPMX20_03341 Glycine cleavage system transcriptional repressor low > 85
Pantoea sp. MT58 0.93 IAI47_06350 pyridoxal phosphate-dependent aminotransferase 0.71 IAI47_05260 glycine cleavage system transcriptional repressor low > 76
Dickeya dadantii 3937 0.93 DDA3937_RS14345 pyridoxal phosphate-dependent aminotransferase 0.79 DDA3937_RS06060 glycine cleavage system transcriptional repressor low > 74
Dickeya dianthicola ME23 0.93 DZA65_RS14995 pyridoxal phosphate-dependent aminotransferase 0.78 DZA65_RS06455 glycine cleavage system transcriptional repressor low > 75
Dickeya dianthicola 67-19 0.92 HGI48_RS14320 pyridoxal phosphate-dependent aminotransferase 0.78 HGI48_RS06105 glycine cleavage system transcriptional repressor low > 71
Pectobacterium carotovorum WPP14 0.91 HER17_RS07115 pyridoxal phosphate-dependent aminotransferase 0.74 HER17_RS15420 glycine cleavage system transcriptional repressor low > 75
Serratia liquefaciens MT49 0.91 IAI46_17720 pyridoxal phosphate-dependent aminotransferase 0.81 IAI46_18785 glycine cleavage system transcriptional repressor low > 86
Erwinia tracheiphila SCR3 0.91 LU632_RS07955 pyridoxal phosphate-dependent aminotransferase 0.77 LU632_RS08320 glycine cleavage system transcriptional repressor low > 74
Rahnella sp. WP5 0.88 EX31_RS19445 pyridoxal phosphate-dependent aminotransferase 0.76 EX31_RS22735 glycine cleavage system transcriptional repressor 0.59 53
Vibrio cholerae E7946 ATCC 55056 0.81 CSW01_09870 pyridoxal phosphate-dependent aminotransferase 0.37 CSW01_10760 glycine cleavage system transcriptional regulator low > 62
Pseudomonas sp. RS175 0.75 PFR28_00984 Glutamate-pyruvate aminotransferase AlaA 0.16 PFR28_00698 Glycine cleavage system transcriptional repressor low > 88
Pseudomonas fluorescens FW300-N2E2 0.75 Pf6N2E2_2446 Aspartate aminotransferase (EC 2.6.1.1) 0.16 Pf6N2E2_2748 Glycine cleavage system transcriptional antiactivator GcvR low > 103
Pseudomonas fluorescens GW456-L13 0.75 PfGW456L13_2252 Aspartate aminotransferase (EC 2.6.1.1) 0.14 PfGW456L13_4508 Glycine cleavage system transcriptional antiactivator GcvR low > 87
Pseudomonas putida KT2440 0.75 PP_1872 glutamate-pyruvate aminotransferase 0.16 PP_1236 putative Glycine cleavage system transcriptional repressor low > 96
Pseudomonas fluorescens FW300-N2C3 0.75 AO356_03090 aminotransferase 0.16 AO356_04535 glycine cleavage system protein R low > 104
Pseudomonas fluorescens FW300-N2E3 0.75 AO353_19150 aminotransferase 0.13 AO353_17665 glycine cleavage system protein R low > 101
Pseudomonas fluorescens FW300-N1B4 0.74 Pf1N1B4_261 Aspartate aminotransferase (EC 2.6.1.1) 0.15 Pf1N1B4_3331 Glycine cleavage system transcriptional antiactivator GcvR low > 87
Pseudomonas sp. S08-1 0.74 OH686_22575 Alanine transaminase 0.14 OH686_19210 Glycine cleavage system transcriptional antiactivator GcvR low > 80
Pseudomonas fluorescens SBW25 0.74 PFLU_RS08510 pyridoxal phosphate-dependent aminotransferase 0.14 PFLU_RS07270 glycine cleavage system protein R low > 109
Pseudomonas fluorescens SBW25-INTG 0.74 PFLU_RS08510 pyridoxal phosphate-dependent aminotransferase 0.14 PFLU_RS07270 glycine cleavage system protein R low > 109
Pseudomonas simiae WCS417 0.74 PS417_08560 aminotransferase 0.15 PS417_07160 glycine cleavage system protein R low > 88
Pseudomonas stutzeri RCH2 0.74 Psest_1772 Aspartate/tyrosine/aromatic aminotransferase 0.14 Psest_1514 Glycine cleavage system regulatory protein low > 67
Pseudomonas syringae pv. syringae B728a 0.73 Psyr_3615 Aminotransferase, class I and II 0.14 Psyr_1547 glycine cleavage system transcriptional repressor low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.73 Psyr_3615 Aminotransferase, class I and II 0.14 Psyr_1547 glycine cleavage system transcriptional repressor low > 86
Shewanella oneidensis MR-1 0.73 SO2483 aspartate aminotransferase, putative (NCBI ptt file) 0.29 SO1878 glycine cleavage system transcriptional repressor, putative (NCBI ptt file) low > 76
Shewanella loihica PV-4 0.73 Shew_1914 aminotransferase AlaT (RefSeq) 0.29 Shew_1847 amino acid-binding ACT domain-containing protein (RefSeq) — —
Shewanella amazonensis SB2B 0.73 Sama_1697 aminotransferase AlaT (RefSeq) 0.28 Sama_1909 glycine cleavage system transcriptional repressor, putative (RefSeq) low > 62
Shewanella sp. ANA-3 0.72 Shewana3_2145 aminotransferase AlaT (RefSeq) 0.28 Shewana3_1655 glycine cleavage system transcriptional repressor, putative (RefSeq) low > 73
Alteromonas macleodii MIT1002 0.66 MIT1002_02306 Glutamate-pyruvate aminotransferase AlaA 0.25 MIT1002_02208 Gcv operon repressor low > 70
Lysobacter sp. OAE881 0.43 ABIE51_RS18840 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme 0.18 ABIE51_RS07990 glycine cleavage system protein R low > 62
Xanthomonas campestris pv. campestris strain 8004 0.39 Xcc-8004.1010.1 Aspartate aminotransferase (EC 2.6.1.1) 0.17 Xcc-8004.3086.1 Glycine cleavage system transcriptional antiactivator GcvR — —
Rhodanobacter denitrificans MT42 0.39 LRK55_RS10860 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme 0.19 LRK55_RS14795 glycine cleavage system protein R low > 63
Rhodanobacter denitrificans FW104-10B01 0.39 LRK54_RS11155 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme 0.19 LRK54_RS15080 glycine cleavage system protein R low > 59
Dyella japonica UNC79MFTsu3.2 0.38 ABZR86_RS12435 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme 0.21 ABZR86_RS00780 glycine cleavage system protein R low > 74

Not shown: 33 genomes with orthologs for b2290 only; 0 genomes with orthologs for b2479 only