Conservation of cofitness between b0311 and b1832 in Escherichia coli BW25113

48 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BW25113 1.0 b0311 betA choline dehydrogenase (NCBI) 1.0 b1832 yebR free methionine-(R)-sulfoxide reductase (RefSeq) 0.16 19
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_03364 Oxygen-dependent choline dehydrogenase 0.99 OHPLBJKB_01899 Free methionine-R-sulfoxide reductase low > 73
Escherichia coli ECOR27 1.00 NOLOHH_01900 betA choline dehydrogenase 0.99 NOLOHH_16965 msrC L-methionine (R)-S-oxide reductase low > 57
Escherichia coli ECRC62 1.00 BNILDI_00025 betA choline dehydrogenase 0.99 BNILDI_15760 msrC L-methionine (R)-S-oxide reductase — —
Escherichia coli BL21 1.00 ECD_00267 choline dehydrogenase, a flavoprotein 0.99 ECD_01803 free methionine-(R)-sulfoxide reductase low > 60
Escherichia fergusonii Becca 0.99 EFB2_03724 Oxygen-dependent choline dehydrogenase 0.99 EFB2_02169 Free methionine-R-sulfoxide reductase low > 86
Escherichia coli ECRC102 0.99 NIAGMN_07105 betA choline dehydrogenase 0.99 NIAGMN_01605 msrC L-methionine (R)-S-oxide reductase — —
Escherichia coli ECRC101 0.99 OKFHMN_09050 betA choline dehydrogenase 0.99 OKFHMN_26455 msrC L-methionine (R)-S-oxide reductase — —
Escherichia coli ECRC101 0.99 MCAODC_28275 betA choline dehydrogenase 0.99 MCAODC_18950 msrC L-methionine (R)-S-oxide reductase — —
Escherichia coli ECRC99 0.99 KEDOAH_18915 betA choline dehydrogenase 0.99 KEDOAH_01650 msrC L-methionine (R)-S-oxide reductase — —
Escherichia coli ECRC98 0.99 JDDGAC_12700 betA choline dehydrogenase 0.99 JDDGAC_01030 msrC L-methionine (R)-S-oxide reductase — —
Escherichia coli ECOR38 0.98 HEPCGN_07610 betA choline dehydrogenase 0.98 HEPCGN_04855 msrC L-methionine (R)-S-oxide reductase low > 85
Enterobacter sp. TBS_079 0.95 MPMX20_01228 Oxygen-dependent choline dehydrogenase 0.92 MPMX20_02739 Free methionine-R-sulfoxide reductase low > 85
Enterobacter asburiae PDN3 0.95 EX28DRAFT_2388 choline dehydrogenase 0.92 EX28DRAFT_0724 GAF domain-containing protein low > 76
Klebsiella michiganensis M5al 0.92 BWI76_RS07610 choline dehydrogenase 0.81 BWI76_RS17985 hypothetical protein low > 92
Pantoea sp. MT58 0.87 IAI47_08645 choline dehydrogenase 0.68 IAI47_08695 GAF domain-containing protein low > 76
Rahnella sp. WP5 0.83 EX31_RS18815 choline dehydrogenase 0.66 EX31_RS24870 GAF domain-containing protein low > 89
Serratia liquefaciens MT49 0.83 IAI46_07720 choline dehydrogenase 0.65 IAI46_10790 GAF domain-containing protein low > 86
Pectobacterium carotovorum WPP14 0.82 HER17_RS08395 choline dehydrogenase 0.65 HER17_RS11700 GAF domain-containing protein low > 75
Pseudomonas sp. RS175 0.81 PFR28_04168 Oxygen-dependent choline dehydrogenase 0.49 PFR28_00990 Free methionine-R-sulfoxide reductase low > 88
Pseudomonas putida KT2440 0.81 PP_5064 choline dehydrogenase 0.50 PP_1877 free methionine-(R)-sulfoxide reductase low > 96
Pseudomonas syringae pv. syringae B728a ΔmexB 0.80 Psyr_4732 choline dehydrogenase 0.50 Psyr_3610 GAF — —
Pseudomonas syringae pv. syringae B728a 0.80 Psyr_4732 choline dehydrogenase 0.50 Psyr_3610 GAF low > 86
Pseudomonas fluorescens FW300-N2E2 0.80 Pf6N2E2_4677 Choline dehydrogenase (EC 1.1.99.1) 0.52 Pf6N2E2_2440 Free methionine-(R)-sulfoxide reductase, contains GAF domain low > 103
Pseudomonas fluorescens FW300-N2C3 0.80 AO356_13790 choline dehydrogenase 0.51 AO356_03060 GAF domain-containing protein low > 104
Pseudomonas fluorescens GW456-L13 0.80 PfGW456L13_1082 Choline dehydrogenase (EC 1.1.99.1) 0.51 PfGW456L13_2258 Free methionine-(R)-sulfoxide reductase, contains GAF domain low > 87
Pseudomonas fluorescens FW300-N2E3 0.80 AO353_07810 choline dehydrogenase 0.49 AO353_19180 GAF domain-containing protein low > 101
Pseudomonas simiae WCS417 0.80 PS417_26345 choline dehydrogenase 0.51 PS417_08590 hypothetical protein low > 88
Pseudomonas fluorescens SBW25-INTG 0.80 PFLU_RS27995 choline dehydrogenase 0.51 PFLU_RS08545 GAF domain-containing protein low > 109
Pseudomonas fluorescens SBW25 0.80 PFLU_RS27995 choline dehydrogenase 0.51 PFLU_RS08545 GAF domain-containing protein low > 109
Pseudomonas fluorescens FW300-N1B4 0.79 Pf1N1B4_2416 Choline dehydrogenase (EC 1.1.99.1) 0.51 Pf1N1B4_255 Free methionine-(R)-sulfoxide reductase, contains GAF domain low > 87
Paraburkholderia sabiae LMG 24235 0.79 QEN71_RS08170 choline dehydrogenase 0.48 QEN71_RS15555 GAF domain-containing protein low > 153
Paraburkholderia graminis OAS925 0.79 ABIE53_006149 choline dehydrogenase 0.46 ABIE53_001450 L-methionine (R)-S-oxide reductase — —
Xanthomonas campestris pv. campestris strain 8004 0.78 Xcc-8004.964.1 Choline dehydrogenase (EC 1.1.99.1) 0.41 Xcc-8004.4532.1 Free methionine-(R)-sulfoxide reductase, contains GAF domain low > 74
Burkholderia phytofirmans PsJN 0.78 BPHYT_RS25155 oxygen-dependent choline dehydrogenase 0.47 BPHYT_RS06285 diguanylate cyclase low > 109
Paraburkholderia bryophila 376MFSha3.1 0.78 H281DRAFT_02463 choline dehydrogenase 0.45 H281DRAFT_00323 GAF domain-containing protein low > 103
Dickeya dadantii 3937 0.75 DDA3937_RS13260 choline dehydrogenase 0.60 DDA3937_RS11975 GAF domain-containing protein low > 74
Alteromonas macleodii MIT1002 0.48 MIT1002_02909 Choline dehydrogenase 0.54 MIT1002_02022 Free methionine-R-sulfoxide reductase low > 70
Rhizobium sp. OAE497 0.46 ABIE40_RS04515 choline dehydrogenase 0.54 ABIE40_RS12595 GAF domain-containing protein low > 107
Phaeobacter inhibens DSM 17395 0.44 PGA1_c21660 choline dehydrogenase BetA 0.30 PGA1_c33170 putative sensor protein low > 62
Caulobacter crescentus NA1000 Δfur 0.43 CCNA_02725 choline dehydrogenase 0.34 CCNA_02362 GAF domain-containing protein low > 67
Caulobacter crescentus NA1000 0.43 CCNA_02725 choline dehydrogenase 0.34 CCNA_02362 GAF domain-containing protein low > 66
Lysobacter sp. OAE881 0.35 ABIE51_RS16345 choline dehydrogenase 0.46 ABIE51_RS17995 GAF domain-containing protein low > 62
Rhodanobacter sp. FW510-T8 0.34 OKGIIK_01330 betA GMC family oxidoreductase 0.46 OKGIIK_16450 msrC diguanylate cyclase low > 52
Rhodanobacter denitrificans MT42 0.33 LRK55_RS05245 choline dehydrogenase 0.47 LRK55_RS06935 GAF domain-containing protein low > 63
Rhodanobacter denitrificans FW104-10B01 0.33 LRK54_RS05470 choline dehydrogenase 0.46 LRK54_RS07200 GAF domain-containing protein low > 59
Castellaniella sp019104865 MT123 0.31 ABCV34_RS13185 GMC family oxidoreductase N-terminal domain-containing protein 0.46 ABCV34_RS14700 GAF domain-containing protein low > 48
Sphingomonas koreensis DSMZ 15582 0.29 Ga0059261_2257 Choline dehydrogenase and related flavoproteins 0.47 Ga0059261_3708 GAF domain-containing protein low > 68
Dyella japonica UNC79MFTsu3.2 0.29 ABZR86_RS18900 GMC family oxidoreductase N-terminal domain-containing protein 0.48 ABZR86_RS12705 GAF domain-containing protein low > 74

Not shown: 22 genomes with orthologs for b0311 only; 21 genomes with orthologs for b1832 only