Conservation of cofitness between b0060 and b0779 in Escherichia coli BW25113

51 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BW25113 1.0 b0060 polB DNA polymerase II (NCBI) 1.0 b0779 uvrB excinuclease ABC subunit B (NCBI) 0.50 7
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_03598 DNA polymerase II 1.00 OHPLBJKB_02934 UvrABC system protein B low > 73
Escherichia coli BL21 1.00 ECD_00062 DNA polymerase II 1.00 ECD_00746 exision nuclease of nucleotide excision repair, DNA damage recognition component low > 60
Escherichia coli ECOR27 0.99 NOLOHH_03140 polB DNA polymerase II 1.00 NOLOHH_22750 uvrB excinuclease ABC subunit UvrB low > 57
Escherichia coli ECRC62 0.99 BNILDI_08465 polB DNA polymerase II 1.00 BNILDI_21020 uvrB excinuclease ABC subunit UvrB — —
Escherichia coli ECRC101 0.99 OKFHMN_10795 polB DNA polymerase II 1.00 OKFHMN_06380 uvrB excinuclease ABC subunit UvrB — —
Escherichia coli ECRC101 0.99 MCAODC_01310 polB DNA polymerase II 1.00 MCAODC_25595 uvrB excinuclease ABC subunit UvrB — —
Escherichia coli ECRC99 0.99 KEDOAH_17360 polB DNA polymerase II 1.00 KEDOAH_21530 uvrB excinuclease ABC subunit UvrB — —
Escherichia coli ECRC102 0.99 NIAGMN_08645 polB DNA polymerase II 1.00 NIAGMN_04425 uvrB excinuclease ABC subunit UvrB — —
Escherichia coli ECRC98 0.99 JDDGAC_14390 polB DNA polymerase II 1.00 JDDGAC_10015 uvrB excinuclease ABC subunit UvrB — —
Escherichia coli ECOR38 0.99 HEPCGN_08785 polB DNA polymerase II 1.00 HEPCGN_01660 uvrB excinuclease ABC subunit UvrB low > 85
Escherichia fergusonii Becca 0.98 EFB2_03985 DNA polymerase II 1.00 EFB2_03326 UvrABC system protein B low > 86
Escherichia coli Nissle 1917 0.98 ECOLIN_RS00320 DNA polymerase II 1.00 ECOLIN_RS04150 excinuclease ABC subunit UvrB low > 52
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.91 GFF182 DNA polymerase II (EC 2.7.7.7) 0.93 GFF675 Excinuclease ABC subunit B low > 78
Enterobacter sp. TBS_079 0.88 MPMX20_00754 DNA polymerase II 0.94 MPMX20_01408 UvrABC system protein B low > 85
Enterobacter asburiae PDN3 0.88 EX28DRAFT_3652 DNA polymerase elongation subunit (family B) 0.94 EX28DRAFT_2211 Excinuclease ABC subunit B low > 76
Klebsiella michiganensis M5al 0.84 BWI76_RS04575 DNA polymerase II 0.93 BWI76_RS08785 excinuclease ABC subunit B low > 92
Pantoea sp. MT58 0.77 IAI47_16050 DNA polymerase II 0.89 IAI47_13505 excinuclease ABC subunit B low > 76
Erwinia tracheiphila SCR3 0.77 LU632_RS02810 polB DNA polymerase II 0.90 LU632_RS09160 uvrB excinuclease ABC subunit B low > 74
Dickeya dadantii 3937 0.70 DDA3937_RS18230 DNA polymerase II 0.87 DDA3937_RS08530 excinuclease ABC subunit B low > 74
Rahnella sp. WP5 0.70 EX31_RS03740 DNA polymerase II 0.87 EX31_RS23720 excinuclease ABC subunit B low > 89
Paraburkholderia graminis OAS925 0.70 ABIE53_004018 DNA polymerase-2 0.65 ABIE53_001645 excinuclease ABC subunit B low > 113
Burkholderia phytofirmans PsJN 0.70 BPHYT_RS23105 DNA polymerase 0.65 BPHYT_RS06905 excinuclease ABC subunit B low > 109
Dickeya dianthicola 67-19 0.70 HGI48_RS18165 DNA polymerase II 0.86 HGI48_RS08695 excinuclease ABC subunit B low > 71
Serratia liquefaciens MT49 0.70 IAI46_03280 DNA polymerase II 0.88 IAI46_06550 excinuclease ABC subunit B 0.72 11
Dickeya dianthicola ME23 0.69 DZA65_RS19305 DNA polymerase II 0.87 DZA65_RS08990 excinuclease ABC subunit B low > 75
Paraburkholderia bryophila 376MFSha3.1 0.69 H281DRAFT_01369 DNA damage-inducible DNA polymerase II 0.65 H281DRAFT_04973 Excinuclease ABC subunit B low > 103
Cupriavidus basilensis FW507-4G11 0.69 RR42_RS09335 DNA polymerase II 0.66 RR42_RS05995 excinuclease ABC subunit B 0.63 5
Pectobacterium carotovorum WPP14 0.69 HER17_RS02995 DNA polymerase II 0.88 HER17_RS13420 excinuclease ABC subunit B low > 75
Pseudomonas fluorescens FW300-N2C3 0.68 AO356_01325 DNA polymerase II 0.71 AO356_21335 excinuclease ABC subunit B 0.48 5
Pseudomonas fluorescens FW300-N2E3 0.68 AO353_29350 DNA polymerase II 0.71 AO353_20545 excinuclease ABC subunit B 0.60 5
Pseudomonas fluorescens FW300-N2E2 0.68 Pf6N2E2_2137 DNA polymerase II (EC 2.7.7.7) 0.71 Pf6N2E2_52 Excinuclease ABC subunit B 0.39 6
Pseudomonas fluorescens GW456-L13 0.68 PfGW456L13_2472 DNA polymerase II (EC 2.7.7.7) 0.70 PfGW456L13_3959 Excinuclease ABC subunit B low > 87
Pseudomonas syringae pv. syringae B728a 0.67 Psyr_2361 DNA damage-inducible DNA polymerase II 0.71 Psyr_1974 Excinuclease ABC subunit B low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.67 Psyr_2361 DNA damage-inducible DNA polymerase II 0.71 Psyr_1974 Excinuclease ABC subunit B low > 86
Pseudomonas sp. RS175 0.67 PFR28_01299 DNA polymerase II 0.71 PFR28_02837 UvrABC system protein B low > 88
Paraburkholderia sabiae LMG 24235 0.67 QEN71_RS13385 DNA polymerase II 0.65 QEN71_RS23870 excinuclease ABC subunit UvrB low > 153
Pseudomonas fluorescens FW300-N1B4 0.67 Pf1N1B4_87 DNA polymerase II (EC 2.7.7.7) 0.71 Pf1N1B4_26 Excinuclease ABC subunit B 0.28 76
Pseudomonas putida KT2440 0.67 PP_2393 DNA polymerase II 0.70 PP_1974 excinuclease UvrABC protein B — —
Pseudomonas simiae WCS417 0.67 PS417_09565 DNA polymerase II 0.70 PS417_18685 excinuclease ABC subunit B 0.22 24
Pseudomonas sp. S08-1 0.66 OH686_16850 DNA polymerase II 0.70 OH686_04580 excinuclease ABC subunit B low > 80
Pseudomonas stutzeri RCH2 0.66 Psest_1519 DNA polymerase elongation subunit (family B) 0.70 Psest_1296 excinuclease ABC, B subunit 0.29 11
Pseudomonas fluorescens SBW25 0.65 PFLU_RS10185 DNA polymerase II 0.70 PFLU_RS20655 excinuclease ABC subunit B low > 109
Pseudomonas fluorescens SBW25-INTG 0.65 PFLU_RS10185 DNA polymerase II 0.70 PFLU_RS20655 excinuclease ABC subunit B low > 109
Herbaspirillum seropedicae SmR1 0.62 HSERO_RS12200 DNA polymerase II 0.64 HSERO_RS15840 excinuclease ABC subunit B 0.24 16
Variovorax sp. SCN45 0.55 GFF7213 DNA polymerase II (EC 2.7.7.7) 0.63 GFF945 Excinuclease ABC subunit B low > 127
Vibrio cholerae E7946 ATCC 55056 0.50 CSW01_06130 DNA polymerase II 0.78 CSW01_05185 excinuclease ABC subunit UvrB low > 62
Shewanella amazonensis SB2B 0.40 Sama_1250 DNA polymerase II (RefSeq) 0.74 Sama_1828 excinuclease ABC subunit B (RefSeq) 0.40 21
Alteromonas macleodii MIT1002 0.40 MIT1002_03358 DNA polymerase II 0.74 MIT1002_01261 Excinuclease ABC subunit B low > 70
Shewanella loihica PV-4 0.38 Shew_2482 DNA polymerase II (RefSeq) 0.74 Shew_2064 excinuclease ABC subunit B (RefSeq) 0.74 8
Shewanella oneidensis MR-1 0.38 SO1820 polB DNA polymerase II (NCBI ptt file) 0.75 SO2506 uvrB excinuclease ABC, B subunit (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.37 Shewana3_2629 DNA polymerase II (RefSeq) 0.74 Shewana3_2166 excinuclease ABC subunit B (RefSeq) low > 73

Not shown: 0 genomes with orthologs for b0060 only; 47 genomes with orthologs for b0779 only