Conservation of cofitness between b0060 and b0472 in Escherichia coli BW25113

51 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BW25113 1.0 b0060 polB DNA polymerase II (NCBI) 1.0 b0472 recR recombination protein RecR (NCBI) 0.58 2
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_03598 DNA polymerase II 1.00 OHPLBJKB_03202 Recombination protein RecR low > 73
Escherichia coli BL21 1.00 ECD_00062 DNA polymerase II 1.00 ECD_00423 gap repair protein low > 60
Escherichia coli ECOR27 0.99 NOLOHH_03140 polB DNA polymerase II 1.00 NOLOHH_01085 recR recombination mediator RecR low > 57
Escherichia coli ECRC62 0.99 BNILDI_08465 polB DNA polymerase II 1.00 BNILDI_22505 recR recombination mediator RecR — —
Escherichia coli ECRC101 0.99 MCAODC_01310 polB DNA polymerase II 1.00 MCAODC_27380 recR recombination mediator RecR — —
Escherichia coli ECRC99 0.99 KEDOAH_17360 polB DNA polymerase II 1.00 KEDOAH_19810 recR recombination mediator RecR — —
Escherichia coli ECRC98 0.99 JDDGAC_14390 polB DNA polymerase II 1.00 JDDGAC_11805 recR recombination mediator RecR — —
Escherichia coli ECRC102 0.99 NIAGMN_08645 polB DNA polymerase II 1.00 NIAGMN_06210 recR recombination mediator RecR — —
Escherichia coli ECRC101 0.99 OKFHMN_10795 polB DNA polymerase II 1.00 OKFHMN_08155 recR recombination mediator RecR — —
Escherichia coli ECOR38 0.99 HEPCGN_08785 polB DNA polymerase II 1.00 HEPCGN_06770 recR recombination mediator RecR low > 85
Escherichia fergusonii Becca 0.98 EFB2_03985 DNA polymerase II 1.00 EFB2_03586 Recombination protein RecR low > 86
Escherichia coli Nissle 1917 0.98 ECOLIN_RS00320 DNA polymerase II 1.00 ECOLIN_RS02805 recombination mediator RecR — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.91 GFF182 DNA polymerase II (EC 2.7.7.7) 0.96 GFF4390 Recombination protein RecR low > 78
Enterobacter sp. TBS_079 0.88 MPMX20_00754 DNA polymerase II 0.96 MPMX20_01074 Recombination protein RecR low > 85
Enterobacter asburiae PDN3 0.88 EX28DRAFT_3652 DNA polymerase elongation subunit (family B) 0.95 EX28DRAFT_2485 DNA replication and repair protein RecR low > 76
Klebsiella michiganensis M5al 0.84 BWI76_RS04575 DNA polymerase II 0.96 BWI76_RS06830 recombination protein RecR low > 92
Pantoea sp. MT58 0.77 IAI47_16050 DNA polymerase II 0.90 IAI47_14465 recombination protein RecR low > 76
Erwinia tracheiphila SCR3 0.77 LU632_RS02810 polB DNA polymerase II 0.89 LU632_RS18105 recR recombination mediator RecR low > 74
Dickeya dadantii 3937 0.70 DDA3937_RS18230 DNA polymerase II 0.90 DDA3937_RS05790 recombination protein RecR low > 74
Rahnella sp. WP5 0.70 EX31_RS03740 DNA polymerase II 0.90 EX31_RS22525 recombination protein RecR low > 89
Paraburkholderia graminis OAS925 0.70 ABIE53_004018 DNA polymerase-2 0.48 ABIE53_002048 recombination protein RecR low > 113
Burkholderia phytofirmans PsJN 0.70 BPHYT_RS23105 DNA polymerase 0.48 BPHYT_RS09070 recombination protein RecR low > 109
Dickeya dianthicola 67-19 0.70 HGI48_RS18165 DNA polymerase II 0.89 HGI48_RS05840 recombination protein RecR — —
Serratia liquefaciens MT49 0.70 IAI46_03280 DNA polymerase II 0.91 IAI46_05240 recombination protein RecR 0.75 10
Dickeya dianthicola ME23 0.69 DZA65_RS19305 DNA polymerase II 0.89 DZA65_RS06165 recombination protein RecR low > 75
Paraburkholderia bryophila 376MFSha3.1 0.69 H281DRAFT_01369 DNA damage-inducible DNA polymerase II 0.49 H281DRAFT_00834 DNA replication and repair protein RecR low > 103
Cupriavidus basilensis FW507-4G11 0.69 RR42_RS09335 DNA polymerase II 0.49 RR42_RS13270 recombination protein RecR 0.63 4
Pectobacterium carotovorum WPP14 0.69 HER17_RS02995 DNA polymerase II 0.89 HER17_RS15695 recombination mediator RecR low > 75
Pseudomonas fluorescens FW300-N2C3 0.68 AO356_01325 DNA polymerase II 0.61 AO356_02495 recombination protein RecR 0.44 10
Pseudomonas fluorescens FW300-N2E3 0.68 AO353_29350 DNA polymerase II 0.61 AO353_00675 recombination protein RecR 0.48 15
Pseudomonas fluorescens FW300-N2E2 0.68 Pf6N2E2_2137 DNA polymerase II (EC 2.7.7.7) 0.61 Pf6N2E2_2325 Recombination protein RecR 0.26 18
Pseudomonas fluorescens GW456-L13 0.68 PfGW456L13_2472 DNA polymerase II (EC 2.7.7.7) 0.60 PfGW456L13_4074 Recombination protein RecR low > 87
Pseudomonas syringae pv. syringae B728a ΔmexB 0.67 Psyr_2361 DNA damage-inducible DNA polymerase II 0.61 Psyr_3396 DNA replication and repair protein RecR low > 86
Pseudomonas syringae pv. syringae B728a 0.67 Psyr_2361 DNA damage-inducible DNA polymerase II 0.61 Psyr_3396 DNA replication and repair protein RecR low > 86
Pseudomonas sp. RS175 0.67 PFR28_01299 DNA polymerase II 0.61 PFR28_01077 Recombination protein RecR low > 88
Paraburkholderia sabiae LMG 24235 0.67 QEN71_RS13385 DNA polymerase II 0.48 QEN71_RS22285 recombination mediator RecR low > 153
Pseudomonas fluorescens FW300-N1B4 0.67 Pf1N1B4_87 DNA polymerase II (EC 2.7.7.7) 0.61 Pf1N1B4_3864 Recombination protein RecR low > 87
Pseudomonas putida KT2440 0.67 PP_2393 DNA polymerase II 0.64 PP_4267 Recombination protein RecR low > 96
Pseudomonas simiae WCS417 0.67 PS417_09565 DNA polymerase II 0.62 PS417_20800 recombination protein RecR low > 88
Pseudomonas sp. S08-1 0.66 OH686_16850 DNA polymerase II 0.60 OH686_02385 recombination protein RecR low > 80
Pseudomonas stutzeri RCH2 0.66 Psest_1519 DNA polymerase elongation subunit (family B) 0.61 Psest_2545 recombination protein RecR 0.31 7
Pseudomonas fluorescens SBW25 0.65 PFLU_RS10185 DNA polymerase II 0.62 PFLU_RS22415 recombination protein RecR low > 109
Pseudomonas fluorescens SBW25-INTG 0.65 PFLU_RS10185 DNA polymerase II 0.62 PFLU_RS22415 recombination protein RecR low > 109
Herbaspirillum seropedicae SmR1 0.62 HSERO_RS12200 DNA polymerase II 0.50 HSERO_RS18355 recombinase RecR 0.29 9
Variovorax sp. SCN45 0.55 GFF7213 DNA polymerase II (EC 2.7.7.7) 0.49 GFF1110 Recombination protein RecR low > 127
Vibrio cholerae E7946 ATCC 55056 0.50 CSW01_06130 DNA polymerase II 0.80 CSW01_05375 recombination protein RecR low > 62
Shewanella amazonensis SB2B 0.40 Sama_1250 DNA polymerase II (RefSeq) 0.64 Sama_1312 recR recombination protein RecR (RefSeq) 0.41 20
Alteromonas macleodii MIT1002 0.40 MIT1002_03358 DNA polymerase II 0.67 MIT1002_02649 Recombination protein RecR low > 70
Shewanella loihica PV-4 0.38 Shew_2482 DNA polymerase II (RefSeq) 0.67 Shew_2233 recombination protein RecR (RefSeq) 0.42 30
Shewanella oneidensis MR-1 0.38 SO1820 polB DNA polymerase II (NCBI ptt file) 0.64 SO2015 recR recombination protein RecR (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.37 Shewana3_2629 DNA polymerase II (RefSeq) 0.65 Shewana3_2444 recR recombination protein RecR (RefSeq) low > 73

Not shown: 0 genomes with orthologs for b0060 only; 49 genomes with orthologs for b0472 only