Conservation of cofitness between b3403 and b0441 in Escherichia coli BW25113

50 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BW25113 1.0 b3403 pck phosphoenolpyruvate carboxykinase (NCBI) 1.0 b0441 ppiD peptidyl-prolyl cis-trans isomerase (rotamase D) (NCBI) 0.40 11
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_00300 Phosphoenolpyruvate carboxykinase (ATP) 1.00 OHPLBJKB_03232 Peptidyl-prolyl cis-trans isomerase D low > 73
Escherichia coli ECOR27 1.00 NOLOHH_08835 pckA phosphoenolpyruvate carboxykinase (ATP) 1.00 NOLOHH_01245 ppiD peptidylprolyl isomerase — —
Escherichia coli BL21 1.00 ECD_03255 phosphoenolpyruvate carboxykinase [ATP] 1.00 ECD_00393 periplasmic folding chaperone, has an inactive PPIase domain low > 60
Escherichia fergusonii Becca 1.00 EFB2_00425 Phosphoenolpyruvate carboxykinase (ATP) 1.00 EFB2_03616 Peptidyl-prolyl cis-trans isomerase D low > 86
Escherichia coli Nissle 1917 1.00 ECOLIN_RS19435 phosphoenolpyruvate carboxykinase (ATP) 1.00 ECOLIN_RS02645 peptidylprolyl isomerase low > 52
Escherichia coli ECRC62 1.00 BNILDI_02685 pckA phosphoenolpyruvate carboxykinase (ATP) 1.00 BNILDI_22660 ppiD peptidylprolyl isomerase — —
Escherichia coli ECRC102 1.00 NIAGMN_14815 pckA phosphoenolpyruvate carboxykinase (ATP) 1.00 NIAGMN_06365 ppiD peptidylprolyl isomerase — —
Escherichia coli ECRC99 1.00 KEDOAH_11095 pckA phosphoenolpyruvate carboxykinase (ATP) 1.00 KEDOAH_19655 ppiD peptidylprolyl isomerase — —
Escherichia coli ECRC101 1.00 OKFHMN_17045 pckA phosphoenolpyruvate carboxykinase (ATP) 1.00 OKFHMN_08310 ppiD peptidylprolyl isomerase — —
Escherichia coli ECRC98 1.00 JDDGAC_20675 pckA phosphoenolpyruvate carboxykinase (ATP) 1.00 JDDGAC_11965 ppiD peptidylprolyl isomerase — —
Escherichia coli ECRC101 1.00 MCAODC_07575 pckA phosphoenolpyruvate carboxykinase (ATP) 1.00 MCAODC_27535 ppiD peptidylprolyl isomerase — —
Escherichia coli ECOR38 1.00 HEPCGN_15865 pckA phosphoenolpyruvate carboxykinase (ATP) 1.00 HEPCGN_06925 ppiD peptidylprolyl isomerase low > 85
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.94 GFF615 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) 0.87 GFF4357 Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8) low > 78
Klebsiella michiganensis M5al 0.93 BWI76_RS26155 phosphoenolpyruvate carboxykinase (ATP) 0.81 BWI76_RS06545 peptidylprolyl isomerase low > 92
Enterobacter asburiae PDN3 0.92 EX28DRAFT_4140 phosphoenolpyruvate carboxykinase (ATP) 0.85 EX28DRAFT_2529 Parvulin-like peptidyl-prolyl isomerase low > 76
Enterobacter sp. TBS_079 0.92 MPMX20_04290 Phosphoenolpyruvate carboxykinase (ATP) 0.85 MPMX20_01032 Peptidyl-prolyl cis-trans isomerase D low > 85
Pectobacterium carotovorum WPP14 0.88 HER17_RS01710 phosphoenolpyruvate carboxykinase (ATP) 0.57 HER17_RS15830 peptidylprolyl isomerase low > 75
Dickeya dianthicola 67-19 0.88 HGI48_RS19740 phosphoenolpyruvate carboxykinase (ATP) 0.57 HGI48_RS05705 peptidylprolyl isomerase low > 71
Dickeya dadantii 3937 0.88 DDA3937_RS19610 phosphoenolpyruvate carboxykinase (ATP) 0.58 DDA3937_RS05660 peptidylprolyl isomerase low > 74
Serratia liquefaciens MT49 0.88 IAI46_23770 phosphoenolpyruvate carboxykinase (ATP) 0.57 IAI46_05030 peptidylprolyl isomerase low > 86
Dickeya dianthicola ME23 0.87 DZA65_RS20830 phosphoenolpyruvate carboxykinase (ATP) 0.57 DZA65_RS06030 peptidylprolyl isomerase low > 75
Rahnella sp. WP5 0.85 EX31_RS04780 phosphoenolpyruvate carboxykinase (ATP) 0.53 EX31_RS22265 peptidylprolyl isomerase low > 89
Erwinia tracheiphila SCR3 0.82 LU632_RS22930 pckA phosphoenolpyruvate carboxykinase (ATP) 0.69 LU632_RS18325 ppiD peptidylprolyl isomerase low > 74
Vibrio cholerae E7946 ATCC 55056 0.81 CSW01_13810 phosphoenolpyruvate carboxykinase (ATP) 0.32 CSW01_09595 peptidylprolyl isomerase low > 62
Pantoea sp. MT58 0.81 IAI47_01830 phosphoenolpyruvate carboxykinase (ATP) 0.68 IAI47_14635 peptidylprolyl isomerase low > 76
Kangiella aquimarina DSM 16071 0.78 B158DRAFT_2395 phosphoenolpyruvate carboxykinase (ATP) 0.16 B158DRAFT_1042 Parvulin-like peptidyl-prolyl isomerase low > 40
Rhodopseudomonas palustris CGA009 0.42 TX73_001865 phosphoenolpyruvate carboxykinase 0.11 TX73_014975 SurA N-terminal domain-containing protein — —
Rhizobium sp. OAE497 0.41 ABIE40_RS19415 phosphoenolpyruvate carboxykinase 0.09 ABIE40_RS09540 peptidylprolyl isomerase low > 107
Dinoroseobacter shibae DFL-12 0.40 Dshi_0213 Phosphoenolpyruvate carboxykinase (ATP) (RefSeq) 0.09 Dshi_1795 putative peptidyl-prolyl cis-trans isomerse D (RefSeq) — —
Phaeobacter inhibens DSM 17395 0.40 PGA1_c01140 phosphoenolpyruvate carboxykinase 0.08 PGA1_c16850 putative peptidyl-prolyl cis-trans isomerase D 0.67 28
Sphingomonas koreensis DSMZ 15582 0.39 Ga0059261_0913 phosphoenolpyruvate carboxykinase (ATP) 0.10 Ga0059261_0255 SurA N-terminal domain/PPIC-type PPIASE domain low > 68
Shewanella amazonensis SB2B 0.39 Sama_0165 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) (from data) 0.27 Sama_1228 peptidyl-prolyl cis-trans isomerase D (RefSeq) low > 62
Shewanella sp. ANA-3 0.38 Shewana3_0147 phosphoenolpyruvate carboxykinase (RefSeq) 0.27 Shewana3_2657 PpiC-type peptidyl-prolyl cis-trans isomerase (RefSeq) low > 73
Marinobacter adhaerens HP15 0.38 HP15_3498 phosphoenolpyruvate carboxykinase (ATP) 0.17 HP15_2181 PpiC-type peptidyl-prolyl cis-trans isomerase — —
Alteromonas macleodii MIT1002 0.38 MIT1002_03972 Phosphoenolpyruvate carboxykinase [ATP] 0.23 MIT1002_02755 Peptidyl-prolyl cis-trans isomerase D low > 70
Shewanella oneidensis MR-1 0.37 SO0162 pckA phosphoenolpyruvate carboxykinase (ATP) (NCBI ptt file) 0.28 SO1798 ppiD peptidyl-prolyl cis-trans isomerase D (NCBI ptt file) low > 76
Shewanella loihica PV-4 0.37 Shew_3623 phosphoenolpyruvate carboxykinase (RefSeq) 0.27 Shew_2504 PpiC-type peptidyl-prolyl cis-trans isomerase (RefSeq) low > 60
Pseudomonas sp. RS175 0.35 PFR28_04874 Phosphoenolpyruvate carboxykinase (ATP) 0.20 PFR28_01231 Peptidyl-prolyl cis-trans isomerase D low > 88
Pseudomonas simiae WCS417 0.35 PS417_01210 hypothetical protein 0.18 PS417_17215 peptidylprolyl isomerase low > 88
Pseudomonas fluorescens FW300-N1B4 0.34 Pf1N1B4_1779 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) 0.19 Pf1N1B4_3949 Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8) — —
Pseudomonas syringae pv. syringae B728a 0.34 Psyr_0168 Phosphoenolpyruvate carboxykinase (ATP) 0.17 Psyr_1751 PpiC-type peptidyl-prolyl cis-trans isomerase low > 86
Pseudomonas fluorescens SBW25 0.34 PFLU_RS01320 phosphoenolpyruvate carboxykinase 0.19 PFLU_RS19150 peptidyl-prolyl cis-trans isomerase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.34 Psyr_0168 Phosphoenolpyruvate carboxykinase (ATP) 0.17 Psyr_1751 PpiC-type peptidyl-prolyl cis-trans isomerase low > 86
Pseudomonas fluorescens SBW25-INTG 0.34 PFLU_RS01320 phosphoenolpyruvate carboxykinase 0.19 PFLU_RS19150 peptidyl-prolyl cis-trans isomerase — —
Pseudomonas fluorescens GW456-L13 0.34 PfGW456L13_420 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) 0.19 PfGW456L13_2556 Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8) low > 87
Pseudomonas fluorescens FW300-N2E3 0.34 AO353_11775 phosphoenolpyruvate carboxykinase [ATP] 0.20 AO353_20200 peptidylprolyl isomerase low > 101
Pseudomonas sp. S08-1 0.33 OH686_11060 phosphoenolpyruvate carboxykinase (ATP) 0.19 OH686_03625 Peptidyl-prolyl cis-trans isomerase PpiD low > 80
Pseudomonas stutzeri RCH2 0.33 Psest_3988 phosphoenolpyruvate carboxykinase (ATP) 0.19 Psest_2283 Parvulin-like peptidyl-prolyl isomerase — —
Pseudomonas fluorescens FW300-N2C3 0.33 AO356_10140 phosphoenolpyruvate carboxykinase [ATP] 0.19 AO356_01725 peptidylprolyl isomerase — —
Pseudomonas fluorescens FW300-N2E2 0.33 Pf6N2E2_3899 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) 0.19 Pf6N2E2_2214 Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8) — —

Not shown: 13 genomes with orthologs for b3403 only; 31 genomes with orthologs for b0441 only