| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Rhodospirillum rubrum S1H | 1.0 | Rru_A1435 | | Two Component, Sigma54 Specific, Transcriptional Regulator, Fis family (NCBI) | 1.0 | Rru_A3678 | | TRAP dicarboxylate transporter- DctP subunit (NCBI) | 0.75 | 4 |
| Sinorhizobium meliloti 1021 | 0.62 | SM_b20613 | | C4-dicarboxylate transport transcriptional regulator | 0.27 | SM_b20036 | | ABC transporter substrate-binding protein | low | > 103 |
| Agrobacterium fabrum C58 | 0.60 | Atu3296 | | two component response regulator for C4-dicarboxylate transport | 0.21 | Atu3137 | | C4-dicarboxylate-binding protein | low | > 89 |
| Rhizobium sp. OAE497 | 0.59 | ABIE40_RS26335 | | sigma-54 dependent transcriptional regulator | 0.17 | ABIE40_RS25820 | | sialic acid TRAP transporter substrate-binding protein SiaP | low | > 107 |
| Castellaniella sp019104865 MT123 | 0.57 | ABCV34_RS02725 | | sigma-54 dependent transcriptional regulator | 0.68 | ABCV34_RS13980 | | TRAP transporter substrate-binding protein | low | > 48 |
| Azospirillum brasilense Sp245 | 0.51 | AZOBR_RS21130 | | Fis family transcriptional regulator | 0.74 | AZOBR_RS09605 | | C4-dicarboxylate ABC transporter | low | > 97 |
| Pseudomonas stutzeri RCH2 | 0.49 | Psest_4132 | | alpha-ketoglutarate DNA-binding response regulator (mifR) (from data) | 0.46 | Psest_4268 | | tripartite ATP-independent periplasmic transporter solute receptor, DctP family | low | > 67 |
| Azospirillum sp. SherDot2 | 0.49 | MPMX19_04251 | | C4-dicarboxylate transport transcriptional regulatory protein DctD | 0.75 | MPMX19_00659 | | C4-dicarboxylate-binding periplasmic protein DctP | low | > 112 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.49 | Psyr_3995 | | Helix-turn-helix, Fis-type | 0.21 | Psyr_0900 | | TRAP dicarboxylate transporter- DctP subunit | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.49 | Psyr_3995 | | Helix-turn-helix, Fis-type | 0.21 | Psyr_0900 | | TRAP dicarboxylate transporter- DctP subunit | low | > 86 |
| Herbaspirillum seropedicae SmR1 | 0.48 | HSERO_RS16810 | | Fis family transcriptional regulator | 0.73 | HSERO_RS04240 | | C4-dicarboxylate ABC transporter | low | > 78 |
| Dechlorosoma suillum PS | 0.48 | Dsui_3467 | | response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains | 0.69 | Dsui_3155 | | tripartite ATP-independent periplasmic transporter solute receptor, DctP family | low | > 51 |
| Pseudomonas sp. S08-1 | 0.48 | OH686_14355 | | C4-dicarboxylate transport transcriptional regulatory protein | 0.36 | OH686_16140 | | TRAP-type transporter, substrate-binding protein | low | > 80 |
| Pseudomonas putida KT2440 | 0.48 | PP_1401 | | C4-dicarboxylate transport transcriptional regulatory protein | 0.19 | PP_1169 | | D-glucuronate / D-galacturonate TRAP transporter, solute receptor component (from data) | low | > 96 |
| Pseudomonas fluorescens FW300-N2E2 | 0.48 | Pf6N2E2_5487 | | Nitrogen regulation protein NR(I) | 0.42 | Pf6N2E2_3238 | | TRAP-type C4-dicarboxylate transport system, periplasmic component | low | > 103 |
| Pseudomonas fluorescens FW300-N2C3 | 0.48 | AO356_17800 | | C4-dicarboxylate ABC transporter | 0.41 | AO356_06880 | | C4-dicarboxylate ABC transporter | low | > 104 |
| Vibrio cholerae E7946 ATCC 55056 | 0.47 | CSW01_09635 | | sigma-54-dependent Fis family transcriptional regulator | 0.35 | CSW01_09650 | | C4-dicarboxylate ABC transporter | 0.50 | 51 |
| Paraburkholderia graminis OAS925 | 0.47 | ABIE53_000648 | | two-component system C4-dicarboxylate transport response regulator DctD | 0.19 | ABIE53_006502 | | tripartite ATP-independent transporter DctP family solute receptor | low | > 113 |
| Pseudomonas sp. RS175 | 0.47 | PFR28_03462 | | C4-dicarboxylate transport transcriptional regulatory protein DctD | 0.45 | PFR28_00119 | | C4-dicarboxylate-binding periplasmic protein DctP | low | > 88 |
| Magnetospirillum magneticum AMB-1 | 0.47 | AMB_RS08380 | | sigma-54-dependent Fis family transcriptional regulator | 0.82 | AMB_RS04560 | | C4-dicarboxylate ABC transporter | low | > 64 |
| Pseudomonas simiae WCS417 | 0.47 | PS417_05535 | | Fis family transcriptional regulator | 0.42 | PS417_14910 | | C4-dicarboxylate ABC transporter | low | > 88 |
| Marinobacter adhaerens HP15 | 0.47 | HP15_725 | | two component, sigma54 specific, transcriptional regulator, Fis family | 0.16 | HP15_2560 | | TRAP dicarboxylate transporter- DctP subunit | low | > 73 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.47 | H281DRAFT_02037 | | two component, sigma54 specific, transcriptional regulator, NtrC subfamily, Fis family | 0.20 | H281DRAFT_03761 | | tripartite ATP-independent transporter solute receptor, DctP family | low | > 103 |
| Pseudomonas fluorescens SBW25 | 0.47 | PFLU_RS05620 | | sigma-54-dependent Fis family transcriptional regulator | 0.42 | PFLU_RS16930 | | TRAP transporter substrate-binding protein | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.47 | PFLU_RS05620 | | sigma-54-dependent Fis family transcriptional regulator | 0.42 | PFLU_RS16930 | | TRAP transporter substrate-binding protein | low | > 109 |
| Burkholderia phytofirmans PsJN | 0.47 | BPHYT_RS02520 | | Fis family transcriptional regulator | 0.19 | BPHYT_RS35760 | | ABC transporter substrate-binding protein | low | > 109 |
| Shewanella sp. ANA-3 | 0.46 | Shewana3_1412 | | two component, sigma54 specific, Fis family transcriptional regulator (RefSeq) | 0.38 | Shewana3_1416 | | TRAP dicarboxylate transporter, DctP subunit (RefSeq) | 0.90 | 3 |
| Shewanella oneidensis MR-1 | 0.46 | SO3138 | dctD | C4-dicarboxylate transport transcriptional regulatory protein (NCBI ptt file) | 0.38 | SO3134 | dctP | C4-dicarboxylate-binding periplasmic protein (NCBI ptt file) | low | > 76 |
| Shewanella loihica PV-4 | 0.45 | Shew_1442 | | two component, sigma54 specific, Fis family transcriptional regulator (RefSeq) | 0.36 | Shew_1446 | | dicarboxylate TRAP transporter (succinate, fumarate, L-malate, and alpha-ketoglutarate), solute receptor component (from data) | 0.97 | 1 |
| Shewanella amazonensis SB2B | 0.45 | Sama_2213 | | response regulator receiver protein (RefSeq) | 0.36 | Sama_2209 | | alpha-ketoglutarate TRAP transporter, solute receptor component (from data) | 0.89 | 3 |
| Variovorax sp. OAS795 | 0.45 | ABID97_RS26605 | | sigma-54 dependent transcriptional regulator | 0.26 | ABID97_RS19625 | | TRAP transporter substrate-binding protein | low | > 91 |
| Variovorax sp. SCN45 | 0.43 | GFF1691 | | Two component, Sigma-54 Specific, central transcriptional regulator of acidic amino acid uptake | 0.24 | GFF6468 | | TRAP-type transport system, periplasmic component, predicted N-acetylneuraminate-binding protein | low | > 127 |
| Dinoroseobacter shibae DFL-12 | 0.41 | Dshi_1196 | | two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) | 0.22 | Dshi_3326 | | TRAP dicarboxylate transporter, DctP subunit (RefSeq) | low | > 64 |
| Phaeobacter inhibens DSM 17395 | 0.32 | PGA1_c13440 | | C4-dicarboxylate transport transcriptional regulatory protein DctD | 0.36 | PGA1_c20680 | | TRAP transporter for fumarate, succinate, L-malate, and 2-oxogulatarate, substrate-binding component (from data) | — | — |
Not shown: 19 genomes with orthologs for Rru_A1435 only; 19 genomes with orthologs for Rru_A3678 only