Conservation of cofitness between Rru_A3203 and Rru_A1200 in Rhodospirillum rubrum S1H

51 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Rhodospirillum rubrum S1H 1.0 Rru_A3203 ribonuclease R (NCBI) 1.0 Rru_A1200 Citrate lyase (NCBI) 0.73 4
Magnetospirillum magneticum AMB-1 0.48 AMB_RS04465 ribonuclease R 0.68 AMB_RS19980 CoA ester lyase low > 64
Azospirillum brasilense Sp245 0.47 AZOBR_RS16165 ribonuclease R 0.71 AZOBR_RS14115 (3S)-malyl-CoA thiolesterase low > 97
Azospirillum sp. SherDot2 0.44 MPMX19_01812 Ribonuclease R 0.64 MPMX19_00611 (3S)-malyl-CoA thioesterase low > 112
Rhodopseudomonas palustris CGA009 0.40 TX73_016160 ribonuclease R 0.43 TX73_001205 CoA ester lyase low > 86
Phaeobacter inhibens DSM 17395 0.39 PGA1_c36430 putative ribonuclease R 0.44 PGA1_c03680 (3S)-malyl-CoA thioesterase [EC:3.1.2.30] (from data) low > 62
Brevundimonas sp. GW460-12-10-14-LB2 0.39 A4249_RS08325 ribonuclease R 0.33 A4249_RS01015 CoA ester lyase low > 48
Caulobacter crescentus NA1000 0.38 CCNA_02537 ribonuclease R 0.40 CCNA_03774 citrate lyase beta chain/citryl-CoA lyase subunit low > 66
Caulobacter crescentus NA1000 Δfur 0.38 CCNA_02537 ribonuclease R 0.40 CCNA_03774 citrate lyase beta chain/citryl-CoA lyase subunit low > 67
Rhizobium sp. OAE497 0.38 ABIE40_RS07350 ribonuclease R 0.31 ABIE40_RS19025 CoA ester lyase low > 107
Sinorhizobium meliloti 1021 0.38 SMc01365 exoribonuclease II protein 0.31 SMc03793 citrate lyase subunit beta low > 103
Agrobacterium fabrum C58 0.37 Atu1303 exoribonuclease 0.36 Atu2788 citrate lyase, beta subunit low > 89
Dinoroseobacter shibae DFL-12 0.34 Dshi_0015 ribonuclease R (RefSeq) 0.45 Dshi_2874 Citrate (pro-3S)-lyase (RefSeq) low > 64
Bosea sp. OAE506 0.33 ABIE41_RS18140 ribonuclease R 0.43 ABIE41_RS08145 CoA ester lyase low > 77
Sphingomonas koreensis DSMZ 15582 0.32 Ga0059261_3266 ribonuclease R 0.27 Ga0059261_0896 Citrate lyase beta subunit low > 68
Pseudomonas stutzeri RCH2 0.24 Psest_0691 ribonuclease R 0.20 Psest_2665 Citrate lyase beta subunit — —
Klebsiella michiganensis M5al 0.24 BWI76_RS02575 exoribonuclease R 0.24 BWI76_RS04445 citrate (pro-3S)-lyase subunit beta low > 92
Castellaniella sp019104865 MT123 0.24 ABCV34_RS06625 ribonuclease R 0.19 ABCV34_RS09445 CoA ester lyase low > 48
Vibrio cholerae E7946 ATCC 55056 0.24 CSW01_13155 ribonuclease R 0.25 CSW01_04125 citrate (pro-3S)-lyase subunit beta low > 62
Pseudomonas simiae WCS417 0.24 PS417_02555 exoribonuclease R 0.23 PS417_14915 host specificity protein low > 88
Pseudomonas fluorescens FW300-N2C3 0.24 AO356_08610 exoribonuclease R 0.18 AO356_28780 host specificity protein — —
Pseudomonas fluorescens SBW25 0.24 PFLU_RS02625 ribonuclease R 0.21 PFLU_RS16935 CoA ester lyase low > 109
Pseudomonas syringae pv. syringae B728a ΔmexB 0.24 Psyr_0579 RNAse R 0.19 Psyr_2171 HpcH/HpaI aldolase low > 86
Pseudomonas syringae pv. syringae B728a 0.24 Psyr_0579 RNAse R 0.19 Psyr_2171 HpcH/HpaI aldolase low > 86
Pseudomonas fluorescens SBW25-INTG 0.24 PFLU_RS02625 ribonuclease R 0.21 PFLU_RS16935 CoA ester lyase low > 109
Dickeya dadantii 3937 0.23 DDA3937_RS17260 ribonuclease R 0.24 DDA3937_RS09785 citrate (pro-3S)-lyase subunit beta low > 74
Dickeya dianthicola 67-19 0.23 HGI48_RS17315 ribonuclease R 0.25 HGI48_RS09800 citrate (pro-3S)-lyase subunit beta low > 71
Cupriavidus basilensis FW507-4G11 0.23 RR42_RS13065 ribonuclease R 0.58 RR42_RS24350 malyl-CoA thiolesterase low > 128
Escherichia coli ECRC101 0.23 OKFHMN_12220 rnr ribonuclease R 0.25 OKFHMN_07455 citE citrate (pro-3S)-lyase subunit beta — —
Escherichia coli BL21 0.23 ECD_04046 exoribonuclease R, RNase R 0.25 ECD_00584 citrate lyase, citryl-ACP lyase (beta) subunit low > 60
Dickeya dianthicola ME23 0.23 DZA65_RS18405 ribonuclease R 0.25 DZA65_RS10110 citrate (pro-3S)-lyase subunit beta low > 75
Escherichia coli BW25113 0.23 b4179 vacB putative enzyme (VIMSS) 0.25 b0616 citE citrate lyase beta chain (acyl lyase subunit) (VIMSS) low > 76
Escherichia coli ECRC62 0.23 BNILDI_07005 rnr ribonuclease R 0.25 BNILDI_21840 citE citrate (pro-3S)-lyase subunit beta — —
Escherichia coli ECRC99 0.23 KEDOAH_15935 rnr ribonuclease R 0.25 KEDOAH_20515 citE citrate (pro-3S)-lyase subunit beta — —
Escherichia coli ECRC101 0.23 MCAODC_02735 rnr ribonuclease R 0.25 MCAODC_26670 citE citrate (pro-3S)-lyase subunit beta — —
Escherichia coli ECRC102 0.23 NIAGMN_10070 rnr ribonuclease R 0.25 NIAGMN_05510 citE citrate lyase subunit beta — —
Escherichia coli ECRC98 0.23 JDDGAC_15860 rnr ribonuclease R 0.25 JDDGAC_11100 citE citrate (pro-3S)-lyase subunit beta — —
Escherichia fergusonii Becca 0.23 EFB2_04356 Ribonuclease R 0.25 EFB2_03475 Citrate lyase subunit beta low > 86
Escherichia coli Nissle 1917 0.23 ECOLIN_RS24265 ribonuclease R 0.25 ECOLIN_RS03365 citrate (pro-3S)-lyase subunit beta — —
Rahnella sp. WP5 0.23 EX31_RS08785 ribonuclease R 0.24 EX31_RS17795 citrate (pro-3S)-lyase subunit beta low > 89
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.23 GFF832 '3'-to-5' exoribonuclease RNase R' transl_table=11 0.27 GFF4528 Citrate lyase beta chain (EC 4.1.3.6) low > 78
Escherichia coli ECOR27 0.23 NOLOHH_04485 rnr ribonuclease R 0.25 NOLOHH_23830 citE citrate lyase subunit beta — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.23 OHPLBJKB_03863 Ribonuclease R 0.25 OHPLBJKB_03089 Citrate lyase subunit beta low > 73
Pseudomonas fluorescens FW300-N1B4 0.23 Pf1N1B4_1403 3'-to-5' exoribonuclease RNase R 0.18 Pf1N1B4_5615 Citrate lyase beta chain (EC 4.1.3.6) — —
Escherichia coli ECOR38 0.23 HEPCGN_10450 rnr ribonuclease R 0.25 HEPCGN_00820 citE citrate (pro-3S)-lyase subunit beta low > 85
Enterobacter asburiae PDN3 0.23 EX28DRAFT_3376 ribonuclease R 0.25 EX28DRAFT_3005 citrate lyase, beta subunit low > 76
Burkholderia phytofirmans PsJN 0.23 BPHYT_RS08455 ribonuclease R 0.21 BPHYT_RS32670 aldolase low > 109
Enterobacter sp. TBS_079 0.23 MPMX20_00460 Ribonuclease R 0.25 MPMX20_03825 Citrate lyase subunit beta low > 85
Kangiella aquimarina DSM 16071 0.23 B158DRAFT_1989 ribonuclease R 0.34 B158DRAFT_1401 Citrate lyase beta subunit low > 40
Pectobacterium carotovorum WPP14 0.23 HER17_RS03835 ribonuclease R 0.24 HER17_RS12170 citrate (pro-3S)-lyase subunit beta low > 75
Serratia liquefaciens MT49 0.22 IAI46_01660 ribonuclease R 0.29 IAI46_16995 citrate (pro-3S)-lyase subunit beta low > 86
Herbaspirillum seropedicae SmR1 0.22 HSERO_RS09290 ribonuclease R 0.15 HSERO_RS14045 aldolase low > 78

Not shown: 28 genomes with orthologs for Rru_A3203 only; 6 genomes with orthologs for Rru_A1200 only