Homologs of QEN71_RS15840 from Paraburkholderia sabiae LMG 24235

RNA polymerase factor sigma-70
SEED: DNA-directed RNA polymerase specialized sigma subunit, sigma24-like
KEGG: RNA polymerase sigma-70 factor, ECF subfamily

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Paraburkholderia sabiae LMG 24235 QEN71_RS15840 RNA polymerase factor sigma-70 sig. 100 100
o Burkholderia phytofirmans PsJN BPHYT_RS20215 RNA polymerase sigma 70 sig. 70 86
  Pseudomonas fluorescens GW456-L13 PfGW456L13_2293 Sigma factor PvdS, controling pyoverdin biosynthesis insig. 41 78
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_216 Sigma factor PvdS, controling pyoverdin biosynthesis insig. 41 78
o Pseudomonas fluorescens FW300-N2E3 AO353_19345 RNA polymerase subunit sigma-70 insig. 40 84
o Pseudomonas sp. RS175 PFR28_01023 hypothetical protein sig. 40 84
o Pseudomonas fluorescens FW300-N2C3 AO356_02895 RNA polymerase subunit sigma-70 strong 40 84
o Pseudomonas fluorescens SBW25 PFLU_RS21525 RNA polymerase factor sigma-70 insig. 39 84
o Pseudomonas fluorescens SBW25-INTG PFLU_RS21525 RNA polymerase factor sigma-70 sig. 39 84
o Pseudomonas simiae WCS417 PS417_19555 RNA polymerase sigma70 strong 39 84
  Herbaspirillum seropedicae SmR1 HSERO_RS11705 extracytoplasmic-function sigma-70 factor insig. 45 75
  Azospirillum sp. SherDot2 MPMX19_03247 putative RNA polymerase sigma factor FecI insig. 44 76
  Azospirillum brasilense Sp245 AZOBR_RS23325 RNA polymerase sigma70 insig. 44 76
  Pseudomonas putida KT2440 PP_4244 alternative sigma factor sig. 40 77
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_2404 Sigma factor PvdS, controling pyoverdin biosynthesis sig. 40 79
o Pseudomonas syringae pv. syringae B728a Psyr_1943 Sigma-70 region 2 strong 40 81
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_1943 Sigma-70 region 2 sig. 40 81
  Pseudomonas sp. S08-1 OH686_01025 hypothetical protein insig. 45 71
  Rhodospirillum rubrum S1H Rru_A0883 Sigma-24 (FecI) (NCBI) insig. 37 74
  Variovorax sp. SCN45 GFF1645 Sigma factor PvdS, controling pyoverdin biosynthesis insig. 37 78
  Rhodospirillum rubrum S1H Rru_A2397 Sigma-24 (FecI) (NCBI) insig. 34 78
  Variovorax sp. OAS795 ABID97_RS21515 sigma-70 family RNA polymerase sigma factor no data 34 72
  Sinorhizobium meliloti 1021 SMc04203 RNA polymerase sigma factor FECI protein insig. 31 75
  Herbaspirillum seropedicae SmR1 HSERO_RS12165 RNA polymerase sigma factor insig. 35 71
  Pseudomonas simiae WCS417 PS417_16255 RNA polymerase sigma factor sig. 30 69
  Pseudomonas putida KT2440 PP_0704 RNA polymerase sigma-70 factor, ECF subfamily strong 35 68
  Pseudomonas fluorescens SBW25 PFLU_RS18285 sigma-70 family RNA polymerase sigma factor insig. 29 69
  Pseudomonas fluorescens SBW25-INTG PFLU_RS18285 sigma-70 family RNA polymerase sigma factor insig. 29 69
  Azospirillum sp. SherDot2 MPMX19_03088 putative RNA polymerase sigma factor FecI insig. 31 75
  Pseudomonas stutzeri RCH2 Psest_4339 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog strong 30 67
  Pseudomonas fluorescens GW456-L13 PfGW456L13_4951 FIG006045: Sigma factor, ECF subfamily insig. 32 76
  Rahnella sp. WP5 EX31_RS16485 sigma-70 family RNA polymerase sigma factor insig. 31 78
  Cupriavidus basilensis FW507-4G11 RR42_RS14885 DNA-directed RNA polymerase sigma-70 factor insig. 29 65
  Rhodospirillum rubrum S1H Rru_A1438 Sigma-24 (FecI) (NCBI) cofit 34 67
  Pectobacterium carotovorum WPP14 HER17_RS17615 sigma-70 family RNA polymerase sigma factor insig. 29 67
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_3412 FIG006045: Sigma factor, ECF subfamily insig. 31 68
  Pseudomonas fluorescens FW300-N2E3 AO353_04915 RNA polymerase subunit sigma-24 insig. 30 76
  Pseudomonas syringae pv. syringae B728a Psyr_4731 Sigma-70 region 2:Sigma-70 region 4 insig. 28 74
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_4731 Sigma-70 region 2:Sigma-70 region 4 insig. 28 74
  Agrobacterium fabrum C58 Atu3692 sigma factor sig. 31 65
  Pseudomonas fluorescens FW300-N2C3 AO356_07625 RNA polymerase subunit sigma insig. 31 68
  Azospirillum brasilense Sp245 AZOBR_RS27315 RNA polymerase sigma 70 insig. 29 75
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS06665 RNA polymerase sigma factor insig. 32 74
  Ralstonia solanacearum UW163 UW163_RS06960 RNA polymerase sigma factor insig. 32 74
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_21 Sigma-70 factor FpvI (ECF subfamily), controling pyoverdin biosynthesis sig. 30 72
  Dechlorosoma suillum PS Dsui_2977 RNA polymerase sigma factor, sigma-70 family insig. 28 67
  Pseudomonas sp. RS175 PFR28_00037 putative RNA polymerase sigma factor FecI insig. 32 68
  Pseudomonas putida KT2440 PP_0352 RNA polymerase sigma-70 factor, ECF subfamily sig. 27 74
  Pseudomonas fluorescens SBW25 PFLU_RS05190 RNA polymerase sigma factor insig. 27 85
  Pseudomonas fluorescens SBW25-INTG PFLU_RS05190 RNA polymerase sigma factor insig. 27 85
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_133 Sigma-70 factor FpvI (ECF subfamily), controling pyoverdin biosynthesis insig. 29 72
  Pseudomonas fluorescens SBW25 PFLU_RS27705 RNA polymerase sigma factor insig. 27 74
  Pseudomonas fluorescens SBW25-INTG PFLU_RS27705 RNA polymerase sigma factor insig. 27 74
  Bacteroides thetaiotaomicron VPI-5482 BT2169 RNA polymerase ECF-type sigma factor (NCBI ptt file) strong 27 73
  Pseudomonas simiae WCS417 PS417_09655 RNA polymerase sigma factor insig. 33 66
  Variovorax sp. SCN45 GFF4182 Extracytoplasmic function (ECF) sigma factor VreI insig. 31 72
  Pseudomonas simiae WCS417 PS417_05120 RNA polymerase subunit sigma-24 insig. 27 85
  Caulobacter crescentus NA1000 CCNA_01032 RNA polymerase ECF-type sigma factor cofit 27 71
  Caulobacter crescentus NA1000 Δfur CCNA_01032 RNA polymerase ECF-type sigma factor cofit 27 71
  Pseudomonas sp. RS175 PFR28_04114 putative RNA polymerase sigma factor FecI insig. 27 74
  Rhodopseudomonas palustris CGA009 TX73_023085 RNA polymerase sigma factor cofit 33 61
  Pseudomonas sp. RS175 PFR28_02867 putative RNA polymerase sigma factor FecI insig. 29 70
  Agrobacterium fabrum C58 Atu3387 sigma factor insig. 29 71
  Cupriavidus basilensis FW507-4G11 RR42_RS28810 RNA polymerase sigma factor no data 29 75
  Pseudomonas simiae WCS417 PS417_26065 RNA polymerase sigma factor insig. 28 74
  Pseudomonas simiae WCS417 PS417_15890 RNA polymerase sigma factor sig. 31 62
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_4581 RNA polymerase sigma-70 factor, ECF subfamily no data 30 71
  Bacteroides ovatus ATCC 8483 BACOVA_03176 RNA polymerase sigma-70 factor insig. 29 71
  Dickeya dadantii 3937 DDA3937_RS03525 sigma-70 family RNA polymerase sigma factor insig. 30 65
  Ralstonia solanacearum PSI07 RPSI07_RS10560 RNA polymerase sigma factor insig. 29 79
  Bacteroides ovatus ATCC 8483 BACOVA_02944 RNA polymerase sigma-70 factor insig. 27 70
  Pectobacterium carotovorum WPP14 HER17_RS18100 sigma-70 family RNA polymerase sigma factor cofit 28 68
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS21740 RNA polymerase sigma factor sig. 32 60
  Pseudomonas fluorescens GW456-L13 PfGW456L13_2394 Sigma-70 factor FpvI (ECF subfamily), controling pyoverdin biosynthesis @ FIG006045: Sigma factor, ECF subfamily insig. 29 70
  Pseudomonas fluorescens SBW25 PFLU_RS17705 sigma-70 family RNA polymerase sigma factor insig. 31 62
  Pseudomonas fluorescens SBW25-INTG PFLU_RS17705 sigma-70 family RNA polymerase sigma factor sig. 31 62
  Pseudomonas fluorescens FW300-N2C3 AO356_14080 RNA polymerase subunit sigma insig. 26 74
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_2474 RNA polymerase sigma-70 factor, ECF subfamily insig. 27 74
  Variovorax sp. SCN45 GFF1727 no description insig. 28 72
  Azospirillum brasilense Sp245 AZOBR_RS26615 RNA polymerase insig. 28 75
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS19630 RNA polymerase sigma factor sig. 31 65
  Ralstonia solanacearum UW163 UW163_RS19545 RNA polymerase sigma factor insig. 31 65
  Variovorax sp. SCN45 GFF4185 RNA polymerase ECF-type sigma factor insig. 30 73
  Bacteroides ovatus ATCC 8483 BACOVA_05556 RNA polymerase sigma-70 factor insig. 28 60
  Paraburkholderia graminis OAS925 ABIE53_002674 RNA polymerase sigma factor (sigma-70 family) insig. 30 67
  Pseudomonas fluorescens FW300-N2C3 AO356_21175 RNA polymerase subunit sigma strong 29 72
  Pseudomonas fluorescens GW456-L13 PfGW456L13_1135 RNA polymerase sigma-70 factor, ECF subfamily insig. 27 68
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_4748 RNA polymerase sigma-70 factor, ECF subfamily insig. 27 68
  Variovorax sp. SCN45 GFF1723 Extracytoplasmic function (ECF) sigma factor VreI no data 30 68
  Pseudomonas fluorescens SBW25 PFLU_RS17395 sigma-70 family RNA polymerase sigma factor insig. 30 65
  Pseudomonas fluorescens SBW25-INTG PFLU_RS17395 sigma-70 family RNA polymerase sigma factor strong 30 65
  Herbaspirillum seropedicae SmR1 HSERO_RS22395 RNA polymerase sigma factor insig. 28 65
  Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS09540 sigma-70 family RNA polymerase sigma factor no data 26 71
  Dechlorosoma suillum PS Dsui_2948 RNA polymerase sigma factor, sigma-70 family insig. 30 65
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS00205 RNA polymerase sigma factor no data 28 65
  Pectobacterium carotovorum WPP14 HER17_RS15360 sigma-70 family RNA polymerase sigma factor insig. 27 71
  Serratia liquefaciens MT49 IAI46_11745 sigma-70 family RNA polymerase sigma factor no data 26 65
  Ralstonia solanacearum PSI07 RPSI07_RS03580 RNA polymerase sigma factor insig. 31 65
  Pseudomonas stutzeri RCH2 Psest_0650 RNA polymerase sigma factor, sigma-70 family insig. 29 69
  Pseudomonas fluorescens GW456-L13 PfGW456L13_3357 RNA polymerase sigma-70 factor, ECF subfamily insig. 27 71