Homologs of PP_0352 from Pseudomonas putida KT2440

RNA polymerase sigma-70 factor, ECF subfamily
SEED: RNA polymerase sigma-70 factor, ECF subfamily
KEGG: RNA polymerase sigma-70 factor, ECF subfamily

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Pseudomonas putida KT2440 PP_0352 RNA polymerase sigma-70 factor, ECF subfamily sig. 100 100
o Pseudomonas sp. BP01 JOY50_RS17880 RNA polymerase sigma factor insig. 98 100
o Pseudomonas sp. RS175 PFR28_04114 putative RNA polymerase sigma factor FecI insig. 85 100
o Pseudomonas sp. SVBP6 COO64_RS22780 RNA polymerase sigma factor insig. 85 100
o Pseudomonas fluorescens FW300-N2C3 AO356_14080 RNA polymerase subunit sigma insig. 83 100
o Pseudomonas simiae WCS417 PS417_26065 RNA polymerase sigma factor insig. 82 99
o Pseudomonas orientalis W4I3 QF045_RS00470 RNA polymerase sigma factor insig. 81 100
o Pseudomonas fluorescens SBW25 PFLU_RS27705 RNA polymerase sigma factor insig. 81 99
o Pseudomonas fluorescens SBW25-INTG PFLU_RS27705 RNA polymerase sigma factor insig. 81 99
o Pseudomonas syringae pv. syringae B728a Psyr_4731 Sigma-70 region 2:Sigma-70 region 4 insig. 83 100
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_4731 Sigma-70 region 2:Sigma-70 region 4 insig. 83 100
o Pseudomonas aeruginosa MRSN321 DY961_RS22365 RNA polymerase sigma factor insig. 78 99
o Pseudomonas aeruginosa PA14 IKLFDK_23065 RNA polymerase sigma factor sig. 78 99
o Pseudomonas aeruginosa PUPa3 DQ20_RS36960 RNA polymerase sigma factor insig. 78 99
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_2474 RNA polymerase sigma-70 factor, ECF subfamily insig. 82 92
o Pseudomonas lactucae CFBP13502 GEMAOFIL_05333 putative RNA polymerase sigma factor FecI insig. 82 92
o Pseudomonas sp. DMC3 GFF87 putative RNA polymerase sigma factor FecI insig. 80 92
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_4748 RNA polymerase sigma-70 factor, ECF subfamily insig. 84 87
o Pseudomonas fluorescens GW456-L13 PfGW456L13_1135 RNA polymerase sigma-70 factor, ECF subfamily insig. 83 87
o Pseudomonas segetis P6 ACVTMO_RS03680 sigma-70 family RNA polymerase sigma factor insig. 66 91
  Serratia liquefaciens MT49 IAI46_11745 sigma-70 family RNA polymerase sigma factor no data 50 95
  Dechlorosoma suillum PS Dsui_2977 RNA polymerase sigma factor, sigma-70 family insig. 51 97
  Pseudomonas stutzeri RCH2 Psest_4339 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog strong 54 87
  Herbaspirillum seropedicae SmR1 HSERO_RS22395 RNA polymerase sigma factor insig. 51 91
  Klebsiella pneumoniae MKP103 KDGMDA_00205 RNA polymerase sigma factor FecI insig. 49 87
  Pseudomonas aeruginosa MRSN321 DY961_RS28585 sigma-70 family RNA polymerase sigma factor insig. 48 95
  Pseudomonas aeruginosa PA14 IKLFDK_09340 RNA polymerase subunit sigma no data 48 95
  Pseudomonas aeruginosa PUPa3 DQ20_RS38070 sigma-70 family RNA polymerase sigma factor no data 48 95
  Escherichia coli BL21 ECD_04159 RNA polymerase sigma-19 factor, fec operon-specific; ECF sigma factor insig. 49 87
  Escherichia coli Nissle 1917 ECOLIN_RS25750 RNA polymerase sigma factor FecI insig. 49 87
  Escherichia coli BW25113 b4293 fecI KpLE2 phage-like element; RNA polymerase, sigma 19 factor (NCBI) strong 49 87
  Escherichia coli ECOR38 HEPCGN_09830 fecI RNA polymerase sigma factor FecI insig. 49 87
  Dechlorosoma suillum PS Dsui_2948 RNA polymerase sigma factor, sigma-70 family insig. 50 92
  Pseudomonas sp. RS175 PFR28_00037 putative RNA polymerase sigma factor FecI insig. 49 95
  Pseudomonas sp. DMC3 GFF2767 putative RNA polymerase sigma factor FecI insig. 50 92
  Pseudomonas sp. SVBP6 COO64_RS10835 sigma-70 family RNA polymerase sigma factor insig. 49 98
  Pseudomonas segetis P6 ACVTMO_RS15980 sigma-70 family RNA polymerase sigma factor insig. 46 91
  Variovorax sp. SCN45 GFF5284 RNA polymerase ECF-type sigma factor insig. 48 90
  Pseudomonas fluorescens FW300-N2C3 AO356_07625 RNA polymerase subunit sigma insig. 49 95
  Pseudomonas sp. SVBP6 COO64_RS10870 sigma-70 family RNA polymerase sigma factor insig. 49 95
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_3412 FIG006045: Sigma factor, ECF subfamily insig. 49 94
  Pseudomonas segetis P6 ACVTMO_RS11095 sigma-70 family RNA polymerase sigma factor insig. 49 95
  Pseudomonas lactucae CFBP13502 GEMAOFIL_02135 putative RNA polymerase sigma factor FecI cofit 46 95
  Pseudomonas syringae pv. syringae B728a Psyr_2580 Sigma-70 region 2 no data 48 95
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_2580 Sigma-70 region 2 insig. 48 95
  Pseudomonas putida KT2440 PP_3577 RNA polymerase, sigma 19 factor insig. 49 97
  Pseudomonas sp. SVBP6 COO64_RS15350 sigma-70 family RNA polymerase sigma factor insig. 49 87
  Cupriavidus basilensis FW507-4G11 RR42_RS31145 RNA polymerase sigma factor insig. 47 95
  Pseudomonas aeruginosa MRSN321 DY961_RS13375 sigma-70 family RNA polymerase sigma factor insig. 46 89
  Pseudomonas aeruginosa PA14 IKLFDK_20100 RNA polymerase subunit sigma sig. 46 89
  Pseudomonas aeruginosa PUPa3 DQ20_RS48675 sigma-70 family RNA polymerase sigma factor insig. 46 89
  Pseudomonas sp. BP01 JOY50_RS26335 sigma-70 family RNA polymerase sigma factor insig. 46 97
  Dickeya dadantii 3937 DDA3937_RS03525 sigma-70 family RNA polymerase sigma factor insig. 50 90
  Pseudomonas simiae WCS417 PS417_00670 RNA polymerase sigma factor sig. 46 91
  Pseudomonas simiae WCS417 PS417_09655 RNA polymerase sigma factor insig. 45 99
  Pseudomonas sp. SVBP6 COO64_RS11370 sigma-70 family RNA polymerase sigma factor insig. 46 94
  Methylophilus sp. DMC18 GFF1862 putative RNA polymerase sigma factor FecI insig. 46 99
o Ralstonia solanacearum IBSBF1503 RALBFv3_RS19630 RNA polymerase sigma factor sig. 48 97
o Ralstonia solanacearum UW163 UW163_RS19545 RNA polymerase sigma factor insig. 48 97
  Variovorax sp. SCN45 GFF1524 FIG006045: Sigma factor, ECF subfamily insig. 42 97
  Cupriavidus basilensis FW507-4G11 RR42_RS28810 RNA polymerase sigma factor no data 46 98
  Klebsiella michiganensis M5al BWI76_RS11395 RNA polymerase sigma factor FecI strong 47 88
  Pseudomonas putida KT2440 PP_0704 RNA polymerase sigma-70 factor, ECF subfamily strong 46 92
  Variovorax sp. SCN45 GFF5862 KEGG: RNA polymerase sigma-70 factor, ECF subfamily insig. 44 93
  Pseudomonas orientalis W4I3 QF045_RS08085 sigma-70 family RNA polymerase sigma factor insig. 43 94
  Pseudomonas sp. DMC3 GFF2735 putative RNA polymerase sigma factor FecI cofit 49 95
  Pseudomonas fluorescens FW300-N2C3 AO356_16910 RNA polymerase subunit sigma insig. 43 94
  Pseudomonas sp. BP01 JOY50_RS26950 sigma-70 family RNA polymerase sigma factor insig. 44 95
  Paraburkholderia sabiae LMG 24235 QEN71_RS15135 sigma-70 family RNA polymerase sigma factor insig. 46 91
  Pectobacterium carotovorum WPP14 HER17_RS17615 sigma-70 family RNA polymerase sigma factor insig. 45 93
  Pseudomonas fluorescens SBW25 PFLU_RS13600 sigma-70 family RNA polymerase sigma factor insig. 49 94
  Pseudomonas fluorescens SBW25-INTG PFLU_RS13600 sigma-70 family RNA polymerase sigma factor insig. 49 94
  Pseudomonas fluorescens FW300-N2C3 AO356_21710 RNA polymerase subunit sigma insig. 48 88
  Pseudomonas fluorescens GW456-L13 PfGW456L13_3565 heme uptake regulator insig. 47 88
  Pectobacterium carotovorum WPP14 HER17_RS21290 sigma-70 family RNA polymerase sigma factor insig. 47 92
  Pseudomonas sp. BP01 JOY50_RS07315 sigma-70 family RNA polymerase sigma factor insig. 47 97
o Ralstonia solanacearum PSI07 RPSI07_RS03580 RNA polymerase sigma factor insig. 46 97
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_2098 heme uptake regulator insig. 48 88
  Pseudomonas aeruginosa MRSN321 DY961_RS16440 sigma-70 family RNA polymerase sigma factor insig. 45 91
  Pseudomonas aeruginosa PUPa3 DQ20_RS38760 sigma-70 family RNA polymerase sigma factor insig. 45 91
  Pseudomonas lactucae CFBP13502 GEMAOFIL_02847 putative RNA polymerase sigma factor FecI no data 49 88
  Pseudomonas fluorescens FW300-N2C3 AO356_26280 RNA polymerase subunit sigma insig. 48 95
  Pseudomonas aeruginosa PA14 IKLFDK_10030 RNA polymerase subunit sigma insig. 45 91
o Ralstonia solanacearum GMI1000 RS_RS21190 RNA polymerase sigma factor cofit 46 97
  Variovorax sp. SCN45 GFF2431 RNA polymerase ECF-type sigma factor insig. 46 92
  Variovorax sp. SCN45 GFF5858 heme uptake regulator insig. 49 88
  Pseudomonas simiae WCS417 PS417_12935 RNA polymerase sigma factor insig. 49 88
  Pseudomonas sp. BP01 JOY50_RS01650 sigma-70 family RNA polymerase sigma factor insig. 47 88
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_6050 RNA polymerase sigma-70 factor, ECF subfamily insig. 47 93
  Variovorax sp. SCN45 GFF723 RNA polymerase ECF-type sigma factor insig. 48 95
  Pseudomonas putida KT2440 PP_4611 RNA polymerase sigma-70 factor, ECF subfamily sig. 43 96
  Herbaspirillum seropedicae SmR1 HSERO_RS12165 RNA polymerase sigma factor insig. 46 96
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_5307 FIG006045: Sigma factor, ECF subfamily strong 42 94
  Pseudomonas syringae pv. syringae B728a Psyr_1040 RNA polymerase sigma factor, ECF subfamily strong 42 97
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_1040 RNA polymerase sigma factor, ECF subfamily insig. 42 97
  Pseudomonas simiae WCS417 PS417_05100 RNA polymerase sigma factor sig. 42 92
  Pseudomonas fluorescens SBW25 PFLU_RS05170 sigma-70 family RNA polymerase sigma factor insig. 42 92
  Pseudomonas fluorescens SBW25-INTG PFLU_RS05170 sigma-70 family RNA polymerase sigma factor strong 42 92
  Pseudomonas lactucae CFBP13502 GEMAOFIL_01226 putative RNA polymerase sigma factor FecI cofit 42 91
  Pseudomonas sp. BP01 JOY50_RS24800 sigma-70 family RNA polymerase sigma factor insig. 45 92