Homologs of PFLU_RS28550 from Pseudomonas fluorescens SBW25-INTG

RNA polymerase sigma factor
SEED: FIG006045: Sigma factor, ECF subfamily
KEGG: RNA polymerase sigma-70 factor, ECF subfamily

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
o Pseudomonas fluorescens SBW25 PFLU_RS28550 RNA polymerase sigma factor insig. 100 100
  Pseudomonas fluorescens SBW25-INTG PFLU_RS28550 RNA polymerase sigma factor insig. 100 100
o Azospirillum brasilense Sp245 AZOBR_RS29160 putative RNA polymerase sigma-70 factor ECF subfamily insig. 49 93
o Azospirillum sp. SherDot2 MPMX19_03082 ECF RNA polymerase sigma factor SigE insig. 48 93
  Rhodospirillum rubrum S1H Rru_A1438 Sigma-24 (FecI) (NCBI) cofit 37 81
  Pseudomonas simiae WCS417 PS417_24420 RNA polymerase sigma70 no data 39 89
  Pseudomonas fluorescens SBW25 PFLU_RS26350 RNA polymerase sigma factor insig. 39 89
  Pseudomonas fluorescens SBW25-INTG PFLU_RS26350 RNA polymerase sigma factor sig. 39 89
o Dyella japonica UNC79MFTsu3.2 ABZR86_RS15455 RNA polymerase sigma factor insig. 38 87
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_398 FIG006045: Sigma factor, ECF subfamily insig. 37 84
  Dechlorosoma suillum PS Dsui_2977 RNA polymerase sigma factor, sigma-70 family insig. 37 86
  Pseudomonas sp. RS175 PFR28_02540 putative RNA polymerase sigma factor FecI insig. 36 84
  Pseudomonas fluorescens FW300-N2C3 AO356_22495 RNA polymerase subunit sigma-24 insig. 37 84
  Pseudomonas fluorescens GW456-L13 PfGW456L13_2727 FIG006045: Sigma factor, ECF subfamily insig. 35 81
  Pseudomonas putida KT2440 PP_4608 RNA polymerase sigma-70 factor, ECF subfamily insig. 35 90
o Sphingomonas koreensis DSMZ 15582 Ga0059261_3549 RNA polymerase sigma factor, sigma-70 family insig. 37 86
  Pectobacterium carotovorum WPP14 HER17_RS17615 sigma-70 family RNA polymerase sigma factor insig. 31 86
  Dechlorosoma suillum PS Dsui_1673 RNA polymerase sigma factor, sigma-70 family no data 29 90
  Azospirillum sp. SherDot2 MPMX19_03088 putative RNA polymerase sigma factor FecI insig. 33 88
  Pseudomonas fluorescens GW456-L13 PfGW456L13_4951 FIG006045: Sigma factor, ECF subfamily insig. 34 88
o Rhodanobacter denitrificans FW104-10B01 LRK54_RS09435 RNA polymerase sigma factor insig. 33 90
  Azospirillum brasilense Sp245 AZOBR_RS27315 RNA polymerase sigma 70 insig. 32 88
  Pseudomonas fluorescens FW300-N2E3 AO353_04915 RNA polymerase subunit sigma-24 insig. 33 93
  Pseudomonas fluorescens SBW25 PFLU_RS05190 RNA polymerase sigma factor insig. 34 93
  Pseudomonas fluorescens SBW25-INTG PFLU_RS05190 RNA polymerase sigma factor insig. 34 93
  Pseudomonas simiae WCS417 PS417_05120 RNA polymerase subunit sigma-24 insig. 33 93
  Pectobacterium carotovorum WPP14 HER17_RS14055 sigma-70 family RNA polymerase sigma factor insig. 34 86
  Dechlorosoma suillum PS Dsui_0621 RNA polymerase sigma factor, sigma-70 family insig. 31 87
  Pseudomonas putida KT2440 PP_4208 RNA polymerase sigma-70 factor, ECF subfamily strong 36 84
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS09455 RNA polymerase sigma factor insig. 36 77
  Rhodopseudomonas palustris CGA009 TX73_016965 RNA polymerase sigma factor insig. 32 97
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS04645 sigma-70 family RNA polymerase sigma factor cofit 31 90
  Rhodospirillum rubrum S1H Rru_A2372 Sigma-24 (FecI) (NCBI) insig. 32 85
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_133 Sigma-70 factor FpvI (ECF subfamily), controling pyoverdin biosynthesis insig. 34 84
o Caulobacter crescentus NA1000 CCNA_01187 RNA polymerase ECF-type sigma factor insig. 34 86
o Caulobacter crescentus NA1000 Δfur CCNA_01187 RNA polymerase ECF-type sigma factor cofit 34 86
  Pseudomonas putida KT2440 PP_3086 putative RNA polymerase sigma-70 factor insig. 31 90
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.715.1 RNA polymerase sigma factor insig. 33 87
  Pseudomonas simiae WCS417 PS417_17630 RNA polymerase sigma factor insig. 32 84
  Azospirillum brasilense Sp245 AZOBR_RS23325 RNA polymerase sigma70 insig. 30 91
  Azospirillum brasilense Sp245 AZOBR_RS26615 RNA polymerase insig. 32 85
  Azospirillum brasilense Sp245 AZOBR_RS30810 RNA polymerase sigma70 insig. 30 86
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS15920 sigma-70 family RNA polymerase sigma factor insig. 30 92
  Pseudomonas putida KT2440 PP_3577 RNA polymerase, sigma 19 factor insig. 33 85
  Lysobacter sp. OAE881 ABIE51_RS06950 RNA polymerase sigma factor strong 31 92
  Pseudomonas fluorescens SBW25 PFLU_RS19420 sigma-70 family RNA polymerase sigma factor insig. 32 84
  Pseudomonas fluorescens SBW25-INTG PFLU_RS19420 sigma-70 family RNA polymerase sigma factor strong 32 84
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS09420 RNA polymerase sigma factor sig. 34 80
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_5307 FIG006045: Sigma factor, ECF subfamily strong 34 85
  Pseudomonas fluorescens SBW25 PFLU_RS17395 sigma-70 family RNA polymerase sigma factor insig. 32 89
  Pseudomonas fluorescens SBW25-INTG PFLU_RS17395 sigma-70 family RNA polymerase sigma factor strong 32 89
  Dickeya dadantii 3937 DDA3937_RS03525 sigma-70 family RNA polymerase sigma factor insig. 30 86
  Azospirillum sp. SherDot2 MPMX19_03247 putative RNA polymerase sigma factor FecI insig. 27 88
  Pseudomonas sp. RS175 PFR28_00232 putative RNA polymerase sigma factor FecI insig. 34 85
  Pseudomonas sp. S08-1 OH686_01025 hypothetical protein insig. 29 93
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS00640 sigma-70 family RNA polymerase sigma factor cofit 30 90
  Pseudomonas fluorescens GW456-L13 PfGW456L13_2394 Sigma-70 factor FpvI (ECF subfamily), controling pyoverdin biosynthesis @ FIG006045: Sigma factor, ECF subfamily insig. 32 84
  Alteromonas macleodii MIT1002 MIT1002_03920 putative RNA polymerase sigma factor FecI cofit 31 78
  Pseudomonas simiae WCS417 PS417_12935 RNA polymerase sigma factor insig. 30 86
  Dechlorosoma suillum PS Dsui_2948 RNA polymerase sigma factor, sigma-70 family insig. 34 89
  Pseudomonas fluorescens SBW25 PFLU_RS13600 sigma-70 family RNA polymerase sigma factor insig. 32 85
  Pseudomonas fluorescens SBW25-INTG PFLU_RS13600 sigma-70 family RNA polymerase sigma factor insig. 32 85
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_2098 heme uptake regulator insig. 30 89
  Pseudomonas fluorescens SBW25 PFLU_RS18285 sigma-70 family RNA polymerase sigma factor insig. 29 85
  Pseudomonas fluorescens SBW25-INTG PFLU_RS18285 sigma-70 family RNA polymerase sigma factor insig. 29 85
  Bacteroides thetaiotaomicron VPI-5482 BT4070 RNA polymerase ECF-type sigma factor (NCBI ptt file) insig. 32 77
  Pseudomonas sp. RS175 PFR28_02867 putative RNA polymerase sigma factor FecI insig. 32 84
  Pseudomonas fluorescens FW300-N2C3 AO356_16910 RNA polymerase subunit sigma insig. 32 85
  Hydrogenophaga sp. GW460-11-11-14-LB1 GFF1181 FIG006045: Sigma factor, ECF subfamily insig. 31 89
  Pseudomonas simiae WCS417 PS417_16255 RNA polymerase sigma factor sig. 29 85
  Pseudomonas stutzeri RCH2 Psest_4339 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog strong 31 86
  Pseudomonas simiae WCS417 PS417_00670 RNA polymerase sigma factor sig. 37 87
  Variovorax sp. SCN45 GFF5284 RNA polymerase ECF-type sigma factor insig. 31 87
  Castellaniella sp019104865 MT123 ABCV34_RS11175 sigma-70 family RNA polymerase sigma factor insig. 31 80
  Pseudomonas simiae WCS417 PS417_06880 RNA polymerase sigma factor insig. 32 79
  Variovorax sp. SCN45 GFF1525 RNA polymerase ECF-type sigma factor insig. 33 88
  Pseudomonas stutzeri RCH2 Psest_0650 RNA polymerase sigma factor, sigma-70 family insig. 33 82
  Pseudomonas fluorescens FW300-N2C3 AO356_21710 RNA polymerase subunit sigma insig. 29 89
  Pseudomonas putida KT2440 PP_2192 putative RNA polymerase sigma-70 factor, ECF subfamily/transmembrane sensor protein insig. 32 87
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_21 Sigma-70 factor FpvI (ECF subfamily), controling pyoverdin biosynthesis sig. 31 84
  Pseudomonas syringae pv. syringae B728a Psyr_2580 Sigma-70 region 2 no data 29 85
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_2580 Sigma-70 region 2 insig. 29 85
o Bacteroides ovatus ATCC 8483 BACOVA_04866 RNA polymerase sigma-70 factor insig. 31 84
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS24305 hypothetical protein sig. 29 86
  Sphingomonas koreensis DSMZ 15582 Ga0059261_3041 RNA polymerase sigma factor, sigma-70 family insig. 30 94
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS05575 RNA polymerase sigma-70 factor insig. 28 85
  Bacteroides ovatus ATCC 8483 BACOVA_00098 RNA polymerase sigma-70 factor insig. 33 77
  Pseudomonas fluorescens FW300-N2C3 AO356_26280 RNA polymerase subunit sigma insig. 31 85
  Bacteroides thetaiotaomicron VPI-5482 BT0139 RNA polymerase ECF-type sigma factor (NCBI ptt file) sig. 29 82
  Pseudomonas fluorescens FW300-N2C3 AO356_21175 RNA polymerase subunit sigma strong 31 84
  Pseudomonas fluorescens FW300-N2C3 AO356_05230 RNA polymerase subunit sigma-24 insig. 29 88
  Agrobacterium fabrum C58 Atu5309 ECF family RNA polymerase sigma factor no data 25 94
  Sphingomonas koreensis DSMZ 15582 Ga0059261_0584 RNA polymerase sigma factor, sigma-70 family insig. 30 81
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_6050 RNA polymerase sigma-70 factor, ECF subfamily insig. 29 85
  Bacteroides ovatus ATCC 8483 BACOVA_05617 RNA polymerase sigma-70 factor sig. 27 94
  Rhodopseudomonas palustris CGA009 TX73_006920 RNA polymerase sigma factor insig. 27 95
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS09360 RNA polymerase sigma factor insig. 32 81
  Pseudomonas putida KT2440 PP_4611 RNA polymerase sigma-70 factor, ECF subfamily sig. 31 88
  Rhodopseudomonas palustris CGA009 TX73_012350 RNA polymerase sigma factor insig. 29 89
  Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS13105 RNA polymerase sigma factor insig. 32 88