| Orth | Species | Gene | Name | Description | Fitness | %Id | Cov |
| | Azospirillum sp. SherDot2 | MPMX19_06866 | | HTH-type transcriptional regulator NimR | insig. | 100 | 100 |
| | Pseudomonas aeruginosa MRSN321 | DY961_RS06270 | | helix-turn-helix transcriptional regulator | sig. | 46 | 85 |
| | Pseudomonas aeruginosa PA14 | IKLFDK_05800 | | AraC family transcriptional regulator | insig. | 46 | 85 |
| | Pseudomonas aeruginosa PUPa3 | DQ20_RS46525 | | helix-turn-helix transcriptional regulator | insig. | 46 | 85 |
| | Herbaspirillum seropedicae SmR1 | HSERO_RS21185 | | transcriptional regulator | insig. | 47 | 88 |
| | Azospirillum brasilense Sp245 | AZOBR_RS28585 | | AraC family transcriptional regulator | insig. | 47 | 88 |
| | Klebsiella michiganensis M5al | BWI76_RS12940 | | AraC family transcriptional regulator | insig. | 45 | 88 |
| | Rhodospirillum rubrum S1H | Rru_A2335 | | Transcriptional Regulator, AraC family (NCBI) | cofit | 47 | 86 |
| | Rhodospirillum rubrum S1H | Rru_A1951 | | Transcriptional Regulator, AraC family (NCBI) | insig. | 47 | 85 |
| | Variovorax sp. OAS795 | ABID97_RS28450 | | helix-turn-helix transcriptional regulator | insig. | 46 | 84 |
| | Azospirillum sp. SherDot2 | MPMX19_04533 | | HTH-type transcriptional regulator NimR | insig. | 45 | 89 |
| | Enterobacter asburiae PDN3 | EX28DRAFT_2415 | | AraC-type DNA-binding domain-containing proteins | insig. | 44 | 88 |
| | Klebsiella michiganensis M5al | BWI76_RS21700 | | AraC family transcriptional regulator | insig. | 44 | 84 |
| o | Rhodopseudomonas palustris CGA009 | TX73_016840 | | helix-turn-helix transcriptional regulator | insig. | 43 | 86 |
| | Variovorax sp. SCN45 | GFF1485 | | Transcriptional regulator, AraC family | insig. | 45 | 88 |
| | Enterobacter sp. TBS_079 | MPMX20_01145 | | HTH-type transcriptional regulator NimR | insig. | 44 | 89 |
| o | Sphingomonas koreensis DSMZ 15582 | Ga0059261_2138 | | transcriptional regulator, AraC family | insig. | 45 | 85 |
| | Rhodopseudomonas palustris CGA009 | TX73_014025 | | helix-turn-helix transcriptional regulator | insig. | 44 | 85 |
| o | Serratia liquefaciens MT49 | IAI46_02585 | | helix-turn-helix transcriptional regulator | insig. | 44 | 80 |
| | Enterobacter asburiae PDN3 | EX28DRAFT_1780 | | AraC-type DNA-binding domain-containing proteins | insig. | 44 | 84 |
| | Pseudomonas simiae WCS417 | PS417_15525 | | AraC family transcriptional regulator | insig. | 42 | 85 |
| | Pseudomonas fluorescens FW300-N2C3 | AO356_29635 | | transcriptional regulator | insig. | 41 | 85 |
| | Enterobacter sp. TBS_079 | MPMX20_01835 | | HTH-type transcriptional regulator NimR | insig. | 43 | 84 |
| | Pseudomonas lactucae CFBP13502 | GEMAOFIL_02878 | | HTH-type transcriptional regulator NimR | cofit | 41 | 84 |
| | Pseudomonas lactucae CFBP13502 | GEMAOFIL_03501 | | HTH-type transcriptional regulator NimR | cofit | 41 | 87 |
| | Pseudomonas fluorescens FW300-N2C3 | AO356_27415 | | AraC family transcriptional regulator | insig. | 40 | 86 |
| | Pseudomonas fluorescens SBW25 | PFLU_RS17510 | | helix-turn-helix transcriptional regulator | insig. | 41 | 86 |
| | Pseudomonas fluorescens SBW25-INTG | PFLU_RS17510 | | helix-turn-helix transcriptional regulator | insig. | 41 | 86 |
| | Escherichia coli ECOR27 | NOLOHH_17210 | nimR | DNA-binding transcriptional regulator NimR | insig. | 42 | 87 |
| | Escherichia coli HS(pFamp)R (ATCC 700891) | OHPLBJKB_01943 | | HTH-type transcriptional regulator NimR | insig. | 42 | 87 |
| | Escherichia coli ECRC62 | BNILDI_15995 | nimR | DNA-binding transcriptional regulator NimR | insig. | 42 | 87 |
| | Escherichia fergusonii Becca | EFB2_02205 | | HTH-type transcriptional regulator NimR | insig. | 42 | 87 |
| | Escherichia coli Nissle 1917 | ECOLIN_RS09975 | | DNA-binding transcriptional regulator NimR | insig. | 42 | 87 |
| | Escherichia coli BW25113 | b1790 | yeaM | predicted DNA-binding transcriptional regulator (NCBI) | insig. | 42 | 87 |
| | Escherichia coli ECOR38 | HEPCGN_05070 | nimR | DNA-binding transcriptional regulator NimR | insig. | 42 | 87 |
| | Escherichia coli ECRC100 | OKFHMN_26680 | nimR | DNA-binding transcriptional regulator NimR | insig. | 42 | 87 |
| | Escherichia coli ECRC101 | MCAODC_18730 | nimR | DNA-binding transcriptional regulator NimR | insig. | 42 | 87 |
| | Escherichia coli ECRC102 | NIAGMN_01385 | nimR | DNA-binding transcriptional regulator NimR | insig. | 42 | 87 |
| | Escherichia coli ECRC98 | JDDGAC_01255 | nimR | DNA-binding transcriptional regulator NimR | insig. | 42 | 87 |
| | Escherichia coli ECRC99 | KEDOAH_01430 | nimR | DNA-binding transcriptional regulator NimR | no data | 42 | 87 |
| | Klebsiella michiganensis M5al | BWI76_RS11455 | | AraC family transcriptional regulator | insig. | 40 | 86 |
| | Escherichia coli BL21 | ECD_01759 | | putative DNA-binding transcriptional regulator | no data | 41 | 87 |
| | Klebsiella pneumoniae MKP103 | KDGMDA_19080 | | AraC family transcriptional regulator | insig. | 42 | 84 |
| | Agrobacterium fabrum C58 | Atu5543 | | AraC family transcriptional regulator | insig. | 44 | 72 |
| | Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | GFF3466 | | Transcriptional regulator, AraC family | insig. | 42 | 87 |
| | Sphingomonas koreensis DSMZ 15582 | Ga0059261_2613 | | AraC-type DNA-binding domain-containing proteins | insig. | 36 | 86 |
| | Variovorax sp. SCN45 | GFF6471 | | Transcriptional regulator, AraC family | insig. | 35 | 86 |
| | Pseudomonas simiae WCS417 | PS417_14805 | | AraC family transcriptional regulator | insig. | 38 | 77 |
| | Pseudomonas fluorescens SBW25 | PFLU_RS16815 | | helix-turn-helix transcriptional regulator | insig. | 39 | 77 |
| | Pseudomonas fluorescens SBW25-INTG | PFLU_RS16815 | | helix-turn-helix transcriptional regulator | insig. | 39 | 77 |
| | Cupriavidus basilensis FW507-4G11 | RR42_RS29270 | | AraC family transcriptional regulator | insig. | 35 | 85 |
| | Pseudomonas orientalis W4I3 | QF045_RS24555 | | helix-turn-helix transcriptional regulator | strong | 36 | 76 |
| | Pseudomonas sp. SVBP6 | COO64_RS11260 | | helix-turn-helix domain-containing protein | insig. | 36 | 78 |
| | Pseudomonas aeruginosa PA14 | IKLFDK_03420 | | AraC family transcriptional regulator | sig. | 37 | 78 |
| | Pseudomonas aeruginosa MRSN321 | DY961_RS08540 | | helix-turn-helix transcriptional regulator | sig. | 37 | 78 |
| | Pseudomonas aeruginosa PUPa3 | DQ20_RS44310 | | helix-turn-helix transcriptional regulator | insig. | 37 | 78 |
| | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_5650 | | Transcriptional regulator, AraC family | insig. | 36 | 78 |
| | Pseudomonas fluorescens FW300-N2E3 | AO353_05765 | | AraC family transcriptional regulator | insig. | 35 | 78 |
| | Azospirillum brasilense Sp245 | AZOBR_RS17100 | | AraC family transcriptional regulator | insig. | 32 | 87 |
| | Pseudomonas sp. DMC3 | GFF4897 | | HTH-type transcriptional regulator NimR | cofit | 35 | 77 |
| o | Dyella japonica UNC79MFTsu3.2 | ABZR86_RS14790 | | helix-turn-helix transcriptional regulator | insig. | 34 | 87 |
| | Pseudomonas aeruginosa PA14 | IKLFDK_20260 | | AraC family transcriptional regulator | sig. | 38 | 78 |
| | Pseudomonas aeruginosa MRSN321 | DY961_RS13225 | | helix-turn-helix transcriptional regulator | insig. | 38 | 78 |
| | Pseudomonas aeruginosa PUPa3 | DQ20_RS48540 | | helix-turn-helix transcriptional regulator | insig. | 38 | 78 |
| | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_3420 | | Transcriptional regulator, AraC family | insig. | 35 | 78 |
| | Sphingobium sp. HT1-2 | GFF3437 | | Transcriptional regulator, AraC family | cofit | 33 | 85 |
| | Dyella japonica UNC79MFTsu3.2 | ABZR86_RS07475 | | helix-turn-helix transcriptional regulator | insig. | 36 | 77 |
| | Rhodospirillum rubrum S1H | Rru_A1462 | | Transcriptional Regulator, AraC family (NCBI) | insig. | 36 | 76 |
| | Pseudomonas fluorescens FW300-N2E3 | AO353_05000 | | AraC family transcriptional regulator | insig. | 33 | 81 |
| | Variovorax sp. SCN45 | GFF334 | | Transcriptional regulator, AraC family | insig. | 36 | 78 |
| | Pseudomonas sp. SVBP6 | COO64_RS24540 | | helix-turn-helix transcriptional regulator | insig. | 31 | 87 |
| | Xanthomonas campestris pv. campestris strain 8004 | Xcc-8004.3528.1 | | hypothetical protein | insig. | 36 | 88 |
| | Rhodospirillum rubrum S1H | Rru_A2490 | | Transcriptional Regulator, AraC family (NCBI) | insig. | 36 | 76 |
| | Rhodospirillum rubrum S1H | Rru_A0140 | | Transcriptional Regulator, AraC family (NCBI) | insig. | 36 | 77 |
| | Pseudomonas fluorescens GW456-L13 | PfGW456L13_3596 | | Transcriptional regulator, AraC family | insig. | 36 | 77 |
| | Cupriavidus basilensis FW507-4G11 | RR42_RS00395 | | AraC family transcriptional regulator | insig. | 34 | 76 |
| | Pseudomonas aeruginosa MRSN321 | DY961_RS13740 | | helix-turn-helix transcriptional regulator | insig. | 39 | 76 |
| | Pseudomonas aeruginosa PA14 | IKLFDK_19725 | | AraC family transcriptional regulator | sig. | 39 | 76 |
| | Pseudomonas lactucae CFBP13502 | GEMAOFIL_03280 | | HTH-type transcriptional regulator NimR | cofit | 37 | 77 |
| o | Dechlorosoma suillum PS | Dsui_2181 | | DNA-binding domain-containing protein, AraC-type | insig. | 35 | 86 |
| | Pseudomonas aeruginosa PUPa3 | DQ20_RS53755 | | helix-turn-helix transcriptional regulator | insig. | 38 | 75 |
| | Azospirillum sp. SherDot2 | MPMX19_03575 | | HTH-type transcriptional regulator NimR | insig. | 31 | 85 |
| | Pseudomonas aeruginosa PUPa3 | DQ20_RS49005 | | helix-turn-helix transcriptional regulator | insig. | 39 | 76 |
| | Pseudomonas aeruginosa MRSN321 | DY961_RS19645 | | helix-turn-helix transcriptional regulator | insig. | 38 | 75 |
| | Pseudomonas aeruginosa PA14 | IKLFDK_07660 | | AraC family transcriptional regulator | insig. | 38 | 75 |
| | Variovorax sp. SCN45 | GFF3729 | | Transcriptional regulator, AraC family | insig. | 34 | 76 |
| | Hydrogenophaga sp. GW460-11-11-14-LB1 | GFF5680 | | Transcriptional regulator, AraC family | insig. | 36 | 76 |
| | Herbaspirillum seropedicae SmR1 | HSERO_RS08365 | | AraC family transcriptional regulator | insig. | 33 | 82 |
| | Pantoea sp. MT58 | IAI47_10240 | | helix-turn-helix transcriptional regulator | insig. | 34 | 84 |
| | Burkholderia phytofirmans PsJN | BPHYT_RS27470 | | AraC family transcriptional regulator | no data | 33 | 85 |
| | Pantoea agglomerans CFBP13505 P0401 | PagCFBP13505_RS05900 | | helix-turn-helix transcriptional regulator | cofit | 34 | 84 |
| | Serratia liquefaciens MT49 | IAI46_22565 | | helix-turn-helix transcriptional regulator | insig. | 36 | 79 |
| | Pseudomonas sp. RS175 | PFR28_03295 | | HTH-type transcriptional regulator NimR | insig. | 35 | 77 |
| | Enterobacter asburiae PDN3 | EX28DRAFT_2771 | | AraC-type DNA-binding domain-containing proteins | insig. | 35 | 83 |
| | Pseudomonas simiae WCS417 | PS417_11450 | | AraC family transcriptional regulator | strong | 33 | 86 |
| | Pseudomonas sp. SVBP6 | COO64_RS22605 | | AraC family transcriptional regulator | insig. | 35 | 75 |
| | Variovorax sp. SCN45 | GFF4545 | | Transcriptional regulator, AraC family | insig. | 36 | 77 |
| | Pseudomonas fluorescens FW300-N2C3 | AO356_18610 | | AraC family transcriptional regulator | insig. | 35 | 77 |
| | Pseudomonas syringae pv. syringae B728a | Psyr_0649 | | transcriptional regulator, AraC family | insig. | 35 | 75 |
| | Pseudomonas syringae pv. syringae B728a ΔmexB | Psyr_0649 | | transcriptional regulator, AraC family | insig. | 35 | 75 |