Homologs of GFF794 from Variovorax sp. SCN45

KEGG: RNA polymerase sigma-70 factor, ECF subfamily

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Variovorax sp. SCN45 GFF794 KEGG: RNA polymerase sigma-70 factor, ECF subfamily insig. 100 100
  Variovorax sp. SCN45 GFF96 RNA polymerase ECF-type sigma factor insig. 59 85
  Variovorax sp. SCN45 GFF1727 no description insig. 61 82
  Variovorax sp. SCN45 GFF4185 RNA polymerase ECF-type sigma factor insig. 62 82
  Cupriavidus basilensis FW507-4G11 RR42_RS14885 DNA-directed RNA polymerase sigma-70 factor insig. 41 79
  Variovorax sp. SCN45 GFF791 RNA polymerase sigma factor RpoE insig. 39 83
  Variovorax sp. SCN45 GFF784 KEGG: RNA polymerase sigma-70 factor, ECF subfamily insig. 37 84
  Variovorax sp. SCN45 GFF1723 Extracytoplasmic function (ECF) sigma factor VreI no data 39 82
  Variovorax sp. SCN45 GFF6854 RNA polymerase ECF-type sigma factor insig. 35 82
  Rhodopseudomonas palustris CGA009 TX73_006920 RNA polymerase sigma factor insig. 33 80
  Rhodopseudomonas palustris CGA009 TX73_006880 sigma-70 family RNA polymerase sigma factor insig. 39 80
  Rhodopseudomonas palustris CGA009 TX73_006850 RNA polymerase sigma factor insig. 38 82
  Variovorax sp. SCN45 GFF4182 Extracytoplasmic function (ECF) sigma factor VreI insig. 39 79
  Pseudomonas fluorescens SBW25 PFLU_RS11840 RNA polymerase sigma factor insig. 32 81
  Pseudomonas fluorescens SBW25-INTG PFLU_RS11840 RNA polymerase sigma factor sig. 32 81
  Pseudomonas simiae WCS417 PS417_11245 RNA polymerase subunit sigma-24 insig. 31 86
  Variovorax sp. SCN45 GFF99 KEGG: RNA polymerase sigma-70 factor, ECF subfamily insig. 34 82
  Pseudomonas aeruginosa MRSN321 DY961_RS09155 vreI;inference=COORDINATES RNA polymerase sigma factor VreI sig. 34 80
  Pseudomonas aeruginosa PA14 IKLFDK_02765 RNA polymerase sigma factor VreI insig. 34 80
  Pseudomonas aeruginosa PUPa3 DQ20_RS58865 vreI;inference=COORDINATES RNA polymerase sigma factor VreI sig. 34 80
  Sphingomonas koreensis DSMZ 15582 Ga0059261_2986 RNA polymerase sigma factor, sigma-70 family insig. 33 85
  Pseudomonas sp. RS175 PFR28_01609 hypothetical protein sig. 32 85
  Pseudomonas sp. DMC3 GFF3003 hypothetical protein insig. 32 85
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_641 Extracytoplasmic function (ECF) sigma factor VreI insig. 32 85
  Pseudomonas fluorescens FW300-N2C3 AO356_24740 RNA polymerase subunit sigma-24 insig. 32 85
  Dechlorosoma suillum PS Dsui_0621 RNA polymerase sigma factor, sigma-70 family insig. 31 82
  Herbaspirillum seropedicae SmR1 HSERO_RS11705 extracytoplasmic-function sigma-70 factor insig. 32 73
  Ralstonia solanacearum PSI07 RPSI07_RS10560 RNA polymerase sigma factor insig. 31 80
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS05075 RNA polymerase sigma factor insig. 31 71
  Pseudomonas sp. BP01 JOY50_RS02475 sigma-70 family RNA polymerase sigma factor no data 33 78
  Azospirillum brasilense Sp245 AZOBR_RS27315 RNA polymerase sigma 70 insig. 31 81
  Pseudomonas sp. SVBP6 COO64_RS03795 RNA polymerase sigma factor insig. 30 80
  Rhodospirillum rubrum S1H Rru_A1438 Sigma-24 (FecI) (NCBI) cofit 30 78
  Agrobacterium fabrum C58 Atu5309 ECF family RNA polymerase sigma factor no data 30 80
  Pseudomonas sp. SVBP6 COO64_RS11395 RNA polymerase sigma factor insig. 31 82
  Pseudomonas fluorescens GW456-L13 PfGW456L13_4951 FIG006045: Sigma factor, ECF subfamily insig. 30 82
  Sphingobium sp. HT1-2 GFF2715 sigma factor insig. 33 66
  Dechlorosoma suillum PS Dsui_1673 RNA polymerase sigma factor, sigma-70 family no data 29 87
  Xanthobacter sp. DMC5 GFF2135 putative RNA polymerase sigma factor FecI insig. 29 84
  Pseudomonas lactucae CFBP13502 GEMAOFIL_04111 hypothetical protein insig. 28 88
  Azospirillum sp. SherDot2 MPMX19_03088 putative RNA polymerase sigma factor FecI insig. 30 81
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS06665 RNA polymerase sigma factor insig. 29 81
  Ralstonia solanacearum UW163 UW163_RS06960 RNA polymerase sigma factor insig. 29 81
  Pseudomonas aeruginosa MRSN321 DY961_RS19165 RNA polymerase sigma factor insig. 28 83
  Variovorax sp. SCN45 GFF1645 Sigma factor PvdS, controling pyoverdin biosynthesis insig. 29 83
  Sphingobium sp. HT1-2 GFF5333 sigma factor cofit 31 73
  Xanthobacter sp. DMC5 GFF2424 putative RNA polymerase sigma factor FecI insig. 33 84
  Pseudomonas aeruginosa PA14 IKLFDK_06490 RNA polymerase subunit sigma-70 insig. 27 83
  Rhodospirillum rubrum S1H Rru_A2397 Sigma-24 (FecI) (NCBI) insig. 31 71
  Pseudomonas fluorescens GW456-L13 PfGW456L13_2727 FIG006045: Sigma factor, ECF subfamily insig. 28 74
  Pseudomonas fluorescens SBW25 PFLU_RS21525 RNA polymerase factor sigma-70 insig. 28 88
  Pseudomonas fluorescens SBW25-INTG PFLU_RS21525 RNA polymerase factor sigma-70 sig. 28 88
  Pseudomonas orientalis W4I3 QF045_RS21700 RNA polymerase factor sigma-70 no data 28 88
  Pseudomonas simiae WCS417 PS417_19555 RNA polymerase sigma70 strong 28 88
  Pseudomonas aeruginosa PUPa3 DQ20_RS53290 RNA polymerase sigma factor insig. 27 83
  Pseudomonas fluorescens FW300-N2E3 AO353_19345 RNA polymerase subunit sigma-70 insig. 30 87
  Azospirillum brasilense Sp245 AZOBR_RS29160 putative RNA polymerase sigma-70 factor ECF subfamily insig. 29 80
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_216 Sigma factor PvdS, controling pyoverdin biosynthesis insig. 29 88
  Burkholderia phytofirmans PsJN BPHYT_RS20215 RNA polymerase sigma 70 sig. 33 64
  Ralstonia solanacearum GMI1000 RS_RS14615 RNA polymerase sigma factor insig. 30 78
  Pseudomonas sp. S08-1 OH686_01025 hypothetical protein insig. 29 72
  Pectobacterium carotovorum WPP14 HER17_RS14055 sigma-70 family RNA polymerase sigma factor insig. 31 78
  Pseudomonas sp. SVBP6 COO64_RS18740 RNA polymerase factor sigma-70 cofit 27 88
  Pseudomonas sp. DMC3 GFF4554 hypothetical protein cofit 29 88
  Pseudomonas fluorescens GW456-L13 PfGW456L13_2293 Sigma factor PvdS, controling pyoverdin biosynthesis insig. 29 88
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS09455 RNA polymerase sigma factor insig. 27 88
  Variovorax sp. SCN45 GFF4658 KEGG: RNA polymerase sigma-70 factor, ECF subfamily insig. 27 76
  Pseudomonas sp. RS175 PFR28_01023 hypothetical protein sig. 29 88
  Pseudomonas fluorescens FW300-N2C3 AO356_02895 RNA polymerase subunit sigma-70 strong 29 88
  Pseudomonas putida KT2440 PP_4244 alternative sigma factor sig. 26 88
  Pseudomonas stutzeri RCH2 Psest_0650 RNA polymerase sigma factor, sigma-70 family insig. 32 76
  Pseudomonas fluorescens FW300-N2C3 AO356_22495 RNA polymerase subunit sigma-24 insig. 28 73
  Rhodospirillum rubrum S1H Rru_A0883 Sigma-24 (FecI) (NCBI) insig. 34 67
  Pseudomonas fluorescens FW300-N2E3 AO353_04915 RNA polymerase subunit sigma-24 insig. 32 74
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_2404 Sigma factor PvdS, controling pyoverdin biosynthesis sig. 30 74
  Pseudomonas sp. BP01 JOY50_RS12755 sigma-70 family RNA polymerase sigma factor insig. 29 85
  Pseudomonas sp. BP01 JOY50_RS11985 RNA polymerase sigma factor insig. 28 85
  Pseudomonas simiae WCS417 PS417_05120 RNA polymerase subunit sigma-24 insig. 29 82
  Pseudomonas lactucae CFBP13502 GEMAOFIL_01230 putative RNA polymerase sigma factor FecI insig. 29 82
  Pseudomonas fluorescens SBW25 PFLU_RS05190 RNA polymerase sigma factor insig. 28 82
  Pseudomonas fluorescens SBW25-INTG PFLU_RS05190 RNA polymerase sigma factor insig. 28 82
  Pseudomonas aeruginosa MRSN321 DY961_RS18585 pvdS;inference=COORDINATES pyoverdine signaling pathway sigma factor PvdS insig. 29 86
  Pseudomonas aeruginosa PA14 IKLFDK_11920 pyoverdine signaling pathway sigma factor PvdS sig. 29 86
  Pseudomonas aeruginosa PUPa3 DQ20_RS59800 pvdS;inference=COORDINATES pyoverdine signaling pathway sigma factor PvdS insig. 29 86
  Pseudomonas sp. RS175 PFR28_02540 putative RNA polymerase sigma factor FecI insig. 28 73
  Pseudomonas sp. BP01 JOY50_RS00025 RNA polymerase factor sigma-70 insig. 27 88
  Pseudomonas syringae pv. syringae B728a Psyr_1943 Sigma-70 region 2 strong 28 87
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_1943 Sigma-70 region 2 sig. 28 87
  Methylophilus sp. DMC18 GFF1078 hypothetical protein insig. 27 82
  Pseudomonas orientalis W4I3 QF045_RS08105 RNA polymerase sigma factor insig. 29 82
  Pseudomonas sp. DMC3 GFF1893 putative RNA polymerase sigma factor FecI insig. 29 82
  Pseudomonas sp. SVBP6 COO64_RS02925 RNA polymerase sigma factor insig. 27 83
  Methylophilus sp. DMC18 GFF1837 hypothetical protein insig. 28 80
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_398 FIG006045: Sigma factor, ECF subfamily insig. 27 73
  Sphingomonas koreensis DSMZ 15582 Ga0059261_3549 RNA polymerase sigma factor, sigma-70 family insig. 28 76
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_2900 FIG006045: Sigma factor, ECF subfamily insig. 28 80
  Variovorax sp. OAS795 ABID97_RS21515 sigma-70 family RNA polymerase sigma factor no data 25 85
  Paraburkholderia sabiae LMG 24235 QEN71_RS15840 RNA polymerase factor sigma-70 sig. 33 65
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS09420 RNA polymerase sigma factor sig. 25 82
  Pseudomonas aeruginosa PA14 IKLFDK_24795 RNA polymerase sigma factor insig. 33 74