Homologs of Psest_4123 from Pseudomonas stutzeri RCH2

Site-specific recombinase XerD
SEED: Probable bacteriophage integrase

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Pseudomonas stutzeri RCH2 Psest_4123 Site-specific recombinase XerD sig. 100 100
  Pseudomonas aeruginosa PUPa3 DQ20_RS43980 tyrosine-type recombinase/integrase insig. 55 92
  Pseudomonas aeruginosa MRSN321 DY961_RS08885 tyrosine-type recombinase/integrase cofit 55 92
  Pseudomonas stutzeri RCH2 Psest_3052 Site-specific recombinase XerD insig. 51 93
  Pseudomonas aeruginosa PA14 IKLFDK_05595 integrase insig. 50 93
o Marinobacter adhaerens HP15 HP15_3093 phage integrase family protein insig. 48 91
o Burkholderia phytofirmans PsJN BPHYT_RS01250 integrase insig. 47 92
o Dickeya dianthicola 67-19 HGI48_RS02890 tyrosine-type recombinase/integrase insig. 45 92
o Pectobacterium carotovorum WPP14 HER17_RS05350 site-specific integrase insig. 45 92
o Erwinia tracheiphila SCR3 LU632_RS03480 tyrosine-type recombinase/integrase insig. 44 92
  Pectobacterium carotovorum WPP14 HER17_RS18625 tyrosine-type recombinase/integrase cofit 44 92
o Erwinia tracheiphila HP pepo 2.2 IJEDHG_05430 xerD integrase cofit 43 92
  Pantoea sp. MT58 IAI47_02995 tyrosine-type recombinase/integrase insig. 43 92
o Pantoea agglomerans CFBP13505 P0401 PagCFBP13505_RS11660 site-specific integrase no data 43 92
  Pseudomonas aeruginosa PA14 IKLFDK_03615 Putative integrase sig. 54 68
o Pseudomonas segetis P6 ACVTMO_RS21410 phage integrase insig. 44 92
o Enterobacter sp. TBS_079 MPMX20_03950 Tyrosine recombinase XerC strong 43 93
  Pseudomonas segetis P6 ACVTMO_RS04260 phage integrase insig. 43 92
  Pectobacterium carotovorum WPP14 HER17_RS07965 tyrosine-type recombinase/integrase insig. 42 92
  Klebsiella pneumoniae MKP103 KDGMDA_02490 integrase insig. 41 94
o Escherichia coli ECRC102 NIAGMN_02040 xerD integrase insig. 43 92
o Escherichia fergusonii Becca EFB2_03259 Tyrosine recombinase XerC insig. 43 92
o Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_02862 Tyrosine recombinase XerD insig. 43 92
  Klebsiella pneumoniae MKP103 KDGMDA_17435 integrase insig. 43 92
o Escherichia coli ECRC100 OKFHMN_26010 xerD integrase insig. 43 92
o Escherichia coli ECRC101 MCAODC_19380 xerD integrase insig. 43 92
o Escherichia coli ECRC99 KEDOAH_02080 xerD integrase no data 43 92
  Dickeya dadantii 3937 DDA3937_RS04115 site-specific integrase insig. 41 92
o Dickeya dianthicola ME23 DZA65_RS04005 site-specific integrase insig. 40 92
  Escherichia coli ECRC62 BNILDI_11500 xerD integrase cofit 40 92
o Escherichia coli ECRC98 JDDGAC_00600 xerD integrase insig. 42 92
o Klebsiella michiganensis M5al BWI76_RS09185 integrase insig. 43 92
  Escherichia coli BL21 ECD_00815 integrase for prophage insig. 43 85
  Escherichia coli ECOR38 HEPCGN_04445 xerD integrase insig. 45 75
  Pseudomonas stutzeri RCH2 Psest_2903 Site-specific recombinase XerD insig. 42 90
  Pseudomonas aeruginosa PUPa3 DQ20_RS55485 tyrosine-type recombinase/integrase insig. 40 92
  Pseudomonas segetis P6 ACVTMO_RS06550 phage integrase insig. 42 91
  Pseudomonas sp. S08-1 OH686_07985 Phage integrase cofit 41 85
  Escherichia coli ECRC98 JDDGAC_09320 integrase strong 39 92
  Erwinia tracheiphila HP pepo 2.2 IJEDHG_01645 Integrase no data 35 92
  Erwinia tracheiphila HP pepo 2.2 IJEDHG_27510 Integrase no data 35 92
  Erwinia tracheiphila SCR3 LU632_RS01475 tyrosine-type recombinase/integrase sig. 35 92
o Rahnella sp. WP5 EX31_RS18465 tyrosine-type recombinase/integrase insig. 37 92
o Vibrio cholerae E7946 ATCC 55056 CSW01_11165 integrase insig. 36 93
  Enterobacter asburiae PDN3 EX28DRAFT_0878 Site-specific recombinase XerD insig. 36 92
  Escherichia coli ECRC101 MCAODC_20995 int Integrase insig. 35 92
  Pseudomonas aeruginosa PA14 IKLFDK_29580 putative bacteriophage integrase no data 69 34
  Erwinia tracheiphila HP pepo 2.2 IJEDHG_25970 Tyr recombinase domain-containing protein cofit 35 78
  Erwinia tracheiphila HP pepo 2.2 IJEDHG_01510 Integrase cofit 35 64
  Erwinia tracheiphila HP pepo 2.2 IJEDHG_23350 integrase no data 45 39
  Pseudomonas sp. S08-1 OH686_16965 hypothetical protein' product='hypothetical protein insig. 62 22
  Erwinia tracheiphila SCR3 LU632_RS21160 tyrosine-type recombinase/integrase no data 38 44
  Erwinia tracheiphila HP pepo 2.2 IJEDHG_25455 Site-specific recombinase phage integrase family protein cofit 43 32
  Escherichia coli ECOR38 HEPCGN_26815 xerD integrase insig. 66 18
  Rhodospirillum rubrum S1H Rru_A1220 Phage integrase (NCBI) no data 27 72
o Agrobacterium fabrum C58 Atu1194 phage-related integrase insig. 25 86
  Sinorhizobium meliloti 1021 SMc02397 integrase insig. 32 57
  Sphingobium sp. HT1-2 GFF3220 Phage (Mu-like) virion morphogenesis protein cofit 26 63
  Phaeobacter inhibens DSM 17395 PGA1_c00260 putative phage integrase, catalytic core insig. 31 59
  Azospirillum brasilense Sp245 AZOBR_RS03965 tyrosine recombinase XerC no data 27 69
o Castellaniella sp019104865 MT123 ABCV34_RS02095 site-specific integrase insig. 27 84
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_0827 Site-specific recombinase XerD insig. 28 59
  Paraburkholderia sabiae LMG 24235 QEN71_RS00355 tyrosine recombinase XerC no data 28 62
  Azospirillum sp. SherDot2 MPMX19_02110 Tyrosine recombinase XerC no data 26 62
  Pantoea sp. MT58 IAI47_03820 site-specific tyrosine recombinase XerD strong 25 63
  Phaeobacter inhibens DSM 17395 PGA1_c05760 putative tyrosine recombinase XerC strong 32 38
  Magnetospirillum magneticum AMB-1 AMB_RS21485 tyrosine recombinase XerC no data 27 76
  Pantoea agglomerans CFBP13505 P0401 PagCFBP13505_RS15880 site-specific tyrosine recombinase XerD cofit 25 63
  Sinorhizobium meliloti 1021 SMc02489 site-specific tyrosine recombinase XerC no data 26 75
  Klebsiella pneumoniae MKP103 KDGMDA_04300 site-specific tyrosine recombinase XerD sig. 27 62
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS15025 tyrosine recombinase XerC strong 26 72
  Sphingomonas koreensis DSMZ 15582 Ga0059261_2764 Site-specific recombinase XerD sig. 28 62
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS10885 tyrosine recombinase XerC strong 28 60
  Xanthobacter sp. DMC5 GFF2054 Tyrosine recombinase XerC no data 25 69
  Klebsiella michiganensis M5al BWI76_RS23815 site-specific tyrosine recombinase XerD no data 26 63
  Serratia liquefaciens MT49 IAI46_20730 site-specific tyrosine recombinase XerD insig. 27 62
  Escherichia coli ECOR38 HEPCGN_18860 xerD site-specific tyrosine recombinase XerD strong 26 75
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF239 Tyrosine recombinase XerC no data 27 58
  Rhodopseudomonas palustris CGA009 TX73_000945 tyrosine recombinase XerC sig. 26 62
  Rhodanobacter sp000427505 FW510-R12 LRK53_RS02315 tyrosine recombinase XerC insig. 27 73
  Rhodanobacter denitrificans MT42 LRK55_RS00045 site-specific integrase insig. 26 86
  Rhodanobacter sp. FW510-T8 OKGIIK_15325 xerC tyrosine recombinase XerC insig. 26 68
  Agrobacterium fabrum C58 Atu2628 site-specific recombinase no data 24 58
  Erwinia tracheiphila HP pepo 2.2 IJEDHG_25445 Phage integrase N-terminal SAM-like domain cofit 29 47
  Escherichia coli BL21 ECD_02726 site-specific tyrosine recombinase strong 27 75
  Escherichia fergusonii Becca EFB2_01007 Tyrosine recombinase XerD strong 27 75
  Escherichia coli ECOR27 NOLOHH_11495 xerD site-specific tyrosine recombinase XerD insig. 27 75
  Escherichia coli ECRC100 OKFHMN_19570 xerD site-specific tyrosine recombinase XerD no data 27 75
  Escherichia coli ECRC101 MCAODC_10090 xerD site-specific tyrosine recombinase XerD no data 27 75
  Escherichia coli ECRC102 NIAGMN_17335 xerD site-specific tyrosine recombinase XerD no data 27 75
  Escherichia coli ECRC62 BNILDI_10025 xerD site-specific tyrosine recombinase XerD insig. 27 75
  Escherichia coli ECRC98 JDDGAC_23210 xerD site-specific tyrosine recombinase XerD no data 27 75
  Escherichia coli ECRC99 KEDOAH_08570 xerD site-specific tyrosine recombinase XerD no data 27 75
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_00821 Tyrosine recombinase XerD sig. 27 75
  Escherichia coli Nissle 1917 ECOLIN_RS16125 site-specific tyrosine recombinase XerD strong 27 75
  Escherichia coli BW25113 b2894 xerD site-specific tyrosine recombinase XerD (NCBI) strong 27 75
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF2991 Tyrosine recombinase XerD cofit 27 62
  Erwinia amylovora T8 OLJFJH_08835 site-specific tyrosine recombinase XerD strong 26 62
  Rhizobium sp. OAE497 ABIE40_RS17950 tyrosine recombinase XerC insig. 25 71
  Alteromonas macleodii MIT1002 MIT1002_00786 Tyrosine recombinase XerD insig. 24 63