Homologs of GFF2103 from Sphingobium sp. HT1-2

Ribonuclease J (endonuclease and 5
SEED: Metallo-beta-lactamase family protein, RNA-specific

37 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Sphingobium sp. HT1-2 GFF2103 Ribonuclease J (endonuclease and 5 no data 100 100
o Sphingomonas koreensis DSMZ 15582 Ga0059261_0693 Predicted hydrolase of the metallo-beta-lactamase superfamily no data 73 100
o Azospirillum sp. SherDot2 MPMX19_01730 Ribonuclease J1 insig. 47 100
o Caulobacter crescentus NA1000 CCNA_02012 metal-dependent hydrolase strong 46 100
o Caulobacter crescentus NA1000 Δfur CCNA_02012 metal-dependent hydrolase cofit 46 100
o Magnetospirillum magneticum AMB-1 AMB_RS13930 RNase J family beta-CASP ribonuclease insig. 48 99
o Azospirillum brasilense Sp245 AZOBR_RS07245 RNA-metabolising metallo-beta-lactamase insig. 47 99
o Rhodospirillum rubrum S1H Rru_A1571 metallo-beta-lactamase (NCBI) cofit 46 99
o Bosea sp. OAE506 ABIE41_RS17865 ribonuclease J sig. 46 99
o Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS06325 ribonuclease J insig. 44 99
o Agrobacterium fabrum C58 Atu1285 metal dependent hydrolase strong 44 100
o Sinorhizobium meliloti 1021 SMc01929 hypothetical protein sig. 43 100
o Xanthobacter sp. DMC5 GFF1235 Ribonuclease J insig. 45 99
o Phaeobacter inhibens DSM 17395 PGA1_c10580 ribonuclease J 1 strong 43 99
o Rhodopseudomonas palustris CGA009 TX73_015210 ribonuclease J insig. 42 100
o Rhizobium sp. OAE497 ABIE40_RS07260 ribonuclease J sig. 42 100
o Dinoroseobacter shibae DFL-12 Dshi_1332 beta-lactamase domain protein (RefSeq) strong 40 99
  Azospirillum brasilense Sp245 AZOBR_RS22860 metallo-beta-lactamase sig. 46 82
  Azospirillum sp. SherDot2 MPMX19_06231 Ribonuclease J insig. 46 80
  Marinobacter adhaerens HP15 HP15_4047 metallo-beta-lactamase family protein insig. 45 77
  Alteromonas macleodii MIT1002 MIT1002_02365 Ribonuclease J 1 cofit 43 77
o Desulfovibrio vulgaris Miyazaki F DvMF_2926 beta-lactamase domain protein (RefSeq) strong 35 97
o Desulfovibrio vulgaris Hildenborough JW710 DVU0876 metallo-beta-lactamase family protein (TIGR) strong 36 97
o Bifidobacterium breve UCC2003 BBR_RS13000 RNase J family beta-CASP ribonuclease no data 34 98
  Synechocystis sp000284455 PCC 6803 SGL_RS16930 ribonuclease J no data 34 99
o Mycobacterium tuberculosis H37Rv Rv2752c Conserved hypothetical protein sig. 37 97
o Synechococcus elongatus PCC 7942 Synpcc7942_1846 hypothetical protein no data 34 92
  Fusobacterium nucleatum SB010 HUW76_04205 ribonuclease J no data 33 93
  Methanococcus maripaludis S2 MMP_RS00270 RNase J family beta-CASP ribonuclease no data 29 76
  Methanococcus maripaludis JJ MMJJ_RS05215 RNase J family beta-CASP ribonuclease no data 29 76
  Vibrio cholerae E7946 ATCC 55056 CSW01_01365 MBL fold hydrolase cofit 30 30
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_12000 MBL fold metallo-hydrolase insig. 34 15
  Burkholderia phytofirmans PsJN BPHYT_RS27805 RNA-metabolising metallo-beta-lactamase insig. 31 21
  Bosea sp. OAE506 ABIE41_RS17145 metal-dependent hydrolase insig. 26 26
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_1519 Metallo-beta-lactamase family protein, RNA-specific insig. 29 22
  Mycobacterium tuberculosis H37Rv Rv0406c Beta lactamase like protein insig. 32 16
  Pseudomonas fluorescens FW300-N2C3 AO356_23925 mRNA 3'-end processing factor insig. 28 22