Homologs of GFF1524 from Variovorax sp. SCN45

FIG006045: Sigma factor, ECF subfamily
SEED: FIG006045: Sigma factor, ECF subfamily
KEGG: RNA polymerase sigma-70 factor, ECF subfamily

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Variovorax sp. SCN45 GFF1524 FIG006045: Sigma factor, ECF subfamily insig. 100 100
o Paraburkholderia sabiae LMG 24235 QEN71_RS15135 sigma-70 family RNA polymerase sigma factor insig. 66 97
o Pseudomonas sp. SVBP6 COO64_RS11370 sigma-70 family RNA polymerase sigma factor insig. 63 94
o Pseudomonas orientalis W4I3 QF045_RS08085 sigma-70 family RNA polymerase sigma factor insig. 63 94
o Pseudomonas aeruginosa MRSN321 DY961_RS13375 sigma-70 family RNA polymerase sigma factor insig. 62 90
o Pseudomonas aeruginosa PA14 IKLFDK_20100 RNA polymerase subunit sigma sig. 62 90
o Pseudomonas aeruginosa PUPa3 DQ20_RS48675 sigma-70 family RNA polymerase sigma factor insig. 62 90
o Pseudomonas simiae WCS417 PS417_05100 RNA polymerase sigma factor sig. 65 91
o Pseudomonas lactucae CFBP13502 GEMAOFIL_01226 putative RNA polymerase sigma factor FecI cofit 62 94
o Pseudomonas sp. RS175 PFR28_00232 putative RNA polymerase sigma factor FecI insig. 60 94
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_1008 FIG006045: Sigma factor, ECF subfamily insig. 64 91
o Pseudomonas fluorescens SBW25 PFLU_RS05170 sigma-70 family RNA polymerase sigma factor insig. 64 91
o Pseudomonas fluorescens SBW25-INTG PFLU_RS05170 sigma-70 family RNA polymerase sigma factor strong 64 91
o Pseudomonas putida KT2440 PP_4611 RNA polymerase sigma-70 factor, ECF subfamily sig. 62 91
o Pseudomonas sp. DMC3 GFF1889 putative RNA polymerase sigma factor FecI cofit 61 94
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_5307 FIG006045: Sigma factor, ECF subfamily strong 61 94
o Pseudomonas syringae pv. syringae B728a Psyr_1040 RNA polymerase sigma factor, ECF subfamily strong 59 91
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_1040 RNA polymerase sigma factor, ECF subfamily insig. 59 91
o Pseudomonas fluorescens FW300-N2C3 AO356_16910 RNA polymerase subunit sigma insig. 60 91
  Variovorax sp. SCN45 GFF2431 RNA polymerase ECF-type sigma factor insig. 55 95
o Herbaspirillum seropedicae SmR1 HSERO_RS00175 RNA polymerase sigma factor insig. 63 95
  Variovorax sp. SCN45 GFF5284 RNA polymerase ECF-type sigma factor insig. 54 96
  Variovorax sp. SCN45 GFF4658 KEGG: RNA polymerase sigma-70 factor, ECF subfamily insig. 55 92
  Herbaspirillum seropedicae SmR1 HSERO_RS22395 RNA polymerase sigma factor insig. 55 93
  Variovorax sp. SCN45 GFF5858 heme uptake regulator insig. 53 95
  Serratia liquefaciens MT49 IAI46_11745 sigma-70 family RNA polymerase sigma factor no data 48 95
o Pseudomonas sp. BP01 JOY50_RS19840 sigma-70 family RNA polymerase sigma factor no data 51 92
  Pseudomonas putida KT2440 PP_3086 putative RNA polymerase sigma-70 factor insig. 51 92
  Pseudomonas fluorescens FW300-N2C3 AO356_26280 RNA polymerase subunit sigma insig. 48 98
  Dechlorosoma suillum PS Dsui_2977 RNA polymerase sigma factor, sigma-70 family insig. 51 91
  Pseudomonas syringae pv. syringae B728a Psyr_2580 Sigma-70 region 2 no data 50 91
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_2580 Sigma-70 region 2 insig. 50 91
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_2098 heme uptake regulator insig. 47 99
  Pseudomonas stutzeri RCH2 Psest_4339 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog strong 48 96
  Pseudomonas fluorescens GW456-L13 PfGW456L13_3565 heme uptake regulator insig. 46 99
  Pseudomonas putida KT2440 PP_0162 RNA polymerase sigma-70 factor, ECF subfamily sig. 53 95
  Pseudomonas segetis P6 ACVTMO_RS11095 sigma-70 family RNA polymerase sigma factor insig. 48 95
  Pseudomonas fluorescens FW300-N2C3 AO356_21710 RNA polymerase subunit sigma insig. 47 99
  Pseudomonas lactucae CFBP13502 GEMAOFIL_02444 putative RNA polymerase sigma factor FecI cofit 53 89
  Variovorax sp. SCN45 GFF5862 KEGG: RNA polymerase sigma-70 factor, ECF subfamily insig. 48 91
  Pseudomonas sp. RS175 PFR28_01871 putative RNA polymerase sigma factor FecI sig. 48 94
  Pseudomonas sp. BP01 JOY50_RS28195 sigma-70 family RNA polymerase sigma factor no data 54 93
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_4818 RNA polymerase sigma-70 factor, ECF subfamily insig. 53 89
  Pseudomonas aeruginosa MRSN321 DY961_RS28585 sigma-70 family RNA polymerase sigma factor insig. 48 95
  Pseudomonas aeruginosa PA14 IKLFDK_09340 RNA polymerase subunit sigma no data 48 95
  Pseudomonas aeruginosa PUPa3 DQ20_RS38070 sigma-70 family RNA polymerase sigma factor no data 48 95
  Pseudomonas sp. DMC3 GFF2735 putative RNA polymerase sigma factor FecI cofit 46 98
  Pseudomonas sp. BP01 JOY50_RS26335 sigma-70 family RNA polymerase sigma factor insig. 46 97
  Pseudomonas lactucae CFBP13502 GEMAOFIL_02135 putative RNA polymerase sigma factor FecI cofit 48 95
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_6050 RNA polymerase sigma-70 factor, ECF subfamily insig. 46 95
  Pseudomonas sp. DMC3 GFF570 putative RNA polymerase sigma factor FecI cofit 44 97
  Pseudomonas sp. SVBP6 COO64_RS10870 sigma-70 family RNA polymerase sigma factor insig. 46 98
  Pseudomonas putida KT2440 PP_3577 RNA polymerase, sigma 19 factor insig. 46 95
  Pseudomonas simiae WCS417 PS417_12935 RNA polymerase sigma factor insig. 49 91
  Pseudomonas simiae WCS417 PS417_09655 RNA polymerase sigma factor insig. 48 95
  Pseudomonas fluorescens FW300-N2C3 AO356_28820 RNA polymerase subunit sigma insig. 51 89
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_1682 RNA polymerase sigma-70 factor, ECF subfamily insig. 51 89
  Pseudomonas fluorescens SBW25 PFLU_RS13600 sigma-70 family RNA polymerase sigma factor insig. 48 91
  Pseudomonas fluorescens SBW25-INTG PFLU_RS13600 sigma-70 family RNA polymerase sigma factor insig. 48 91
  Cupriavidus basilensis FW507-4G11 RR42_RS31145 RNA polymerase sigma factor insig. 46 97
  Pseudomonas sp. BP01 JOY50_RS26950 sigma-70 family RNA polymerase sigma factor insig. 45 95
  Dechlorosoma suillum PS Dsui_2948 RNA polymerase sigma factor, sigma-70 family insig. 49 89
  Pseudomonas sp. RS175 PFR28_00037 putative RNA polymerase sigma factor FecI insig. 46 96
  Klebsiella pneumoniae MKP103 KDGMDA_00205 RNA polymerase sigma factor FecI insig. 46 91
  Pseudomonas lactucae CFBP13502 GEMAOFIL_02847 putative RNA polymerase sigma factor FecI no data 48 95
  Klebsiella michiganensis M5al BWI76_RS11395 RNA polymerase sigma factor FecI strong 45 95
  Cupriavidus basilensis FW507-4G11 RR42_RS28810 RNA polymerase sigma factor no data 47 96
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.715.1 RNA polymerase sigma factor insig. 45 97
  Pseudomonas sp. SVBP6 COO64_RS10835 sigma-70 family RNA polymerase sigma factor insig. 47 99
  Pseudomonas simiae WCS417 PS417_00670 RNA polymerase sigma factor sig. 43 90
  Escherichia coli BL21 ECD_04159 RNA polymerase sigma-19 factor, fec operon-specific; ECF sigma factor insig. 46 91
  Escherichia coli Nissle 1917 ECOLIN_RS25750 RNA polymerase sigma factor FecI insig. 46 91
  Escherichia coli BW25113 b4293 fecI KpLE2 phage-like element; RNA polymerase, sigma 19 factor (NCBI) strong 46 91
  Pseudomonas fluorescens SBW25 PFLU_RS17395 sigma-70 family RNA polymerase sigma factor insig. 46 89
  Pseudomonas fluorescens SBW25-INTG PFLU_RS17395 sigma-70 family RNA polymerase sigma factor strong 46 89
  Pseudomonas sp. BP01 JOY50_RS07315 sigma-70 family RNA polymerase sigma factor insig. 45 95
  Pseudomonas fluorescens FW300-N2C3 AO356_07625 RNA polymerase subunit sigma insig. 45 96
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_3412 FIG006045: Sigma factor, ECF subfamily insig. 49 88
  Pseudomonas orientalis W4I3 QF045_RS02910 sigma-70 family RNA polymerase sigma factor insig. 42 92
  Pseudomonas aeruginosa MRSN321 DY961_RS22365 RNA polymerase sigma factor insig. 46 97
  Pseudomonas aeruginosa PA14 IKLFDK_23065 RNA polymerase sigma factor sig. 46 97
  Pseudomonas aeruginosa PUPa3 DQ20_RS36960 RNA polymerase sigma factor insig. 46 97
  Variovorax sp. SCN45 GFF723 RNA polymerase ECF-type sigma factor insig. 48 95
  Escherichia coli ECOR38 HEPCGN_09830 fecI RNA polymerase sigma factor FecI insig. 46 91
  Pseudomonas sp. RS175 PFR28_04775 putative RNA polymerase sigma factor FecI insig. 47 96
  Pseudomonas segetis P6 ACVTMO_RS15980 sigma-70 family RNA polymerase sigma factor insig. 44 95
  Pseudomonas fluorescens FW300-N2C3 AO356_10620 RNA polymerase subunit sigma insig. 48 96
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_3991 RNA polymerase sigma-70 factor, ECF subfamily insig. 46 96
o Pectobacterium carotovorum WPP14 HER17_RS21290 sigma-70 family RNA polymerase sigma factor insig. 45 90
  Pectobacterium carotovorum WPP14 HER17_RS17615 sigma-70 family RNA polymerase sigma factor insig. 44 94
  Pseudomonas putida KT2440 PP_0704 RNA polymerase sigma-70 factor, ECF subfamily strong 47 92
  Pseudomonas sp. SVBP6 COO64_RS19180 sigma-70 family RNA polymerase sigma factor insig. 46 91
  Pseudomonas syringae pv. syringae B728a Psyr_4731 Sigma-70 region 2:Sigma-70 region 4 insig. 46 91
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_4731 Sigma-70 region 2:Sigma-70 region 4 insig. 46 91
  Pseudomonas sp. SVBP6 COO64_RS15350 sigma-70 family RNA polymerase sigma factor insig. 42 93
  Pseudomonas fluorescens SBW25 PFLU_RS30180 sigma-70 family RNA polymerase sigma factor insig. 42 89
  Pseudomonas fluorescens SBW25-INTG PFLU_RS30180 sigma-70 family RNA polymerase sigma factor insig. 42 89
  Pseudomonas sp. SVBP6 COO64_RS14455 sigma-70 family RNA polymerase sigma factor insig. 46 91
  Pseudomonas sp. DMC3 GFF4294 putative RNA polymerase sigma factor FecI insig. 46 89
  Pseudomonas simiae WCS417 PS417_28525 RNA polymerase sigma factor insig. 42 89