| Orth | Species | Gene | Name | Description | Fitness | %Id | Cov |
|---|
| | Bacteroides ovatus ATCC 8483 | BACOVA_02393 | | Sigma-54 interaction domain protein | insig. | 100 | 100 |
| o | Bacteroides thetaiotaomicron VPI-5482 | BT0690 | | two-component system response regulator (NCBI ptt file) | insig. | 85 | 100 |
| o | Bacteroides stercoris CC31F | HMPREF1181_RS16190 | | sigma-54-dependent Fis family transcriptional regulator | insig. | 74 | 100 |
| o | Phocaeicola vulgatus CL09T03C04 | HMPREF1058_RS03545 | | sigma-54-dependent Fis family transcriptional regulator | sig. | 73 | 100 |
| o | Phocaeicola dorei CL03T12C01 | ABI39_RS17605 | | sigma-54-dependent Fis family transcriptional regulator | insig. | 72 | 100 |
| o | Parabacteroides merdae CL09T00C40 | HMPREF1078_RS08600 | | sigma-54 dependent transcriptional regulator | insig. | 65 | 100 |
| | Phocaeicola dorei CL03T12C01 | ABI39_RS17680 | | sigma-54-dependent Fis family transcriptional regulator | insig. | 54 | 99 |
| | Phocaeicola vulgatus CL09T03C04 | HMPREF1058_RS03345 | | sigma-54-dependent Fis family transcriptional regulator | insig. | 54 | 99 |
| | Parabacteroides merdae CL09T00C40 | HMPREF1078_RS05570 | | sigma-54 dependent transcriptional regulator | insig. | 55 | 100 |
| | Bacteroides ovatus ATCC 8483 | BACOVA_04200 | | Sigma-54 interaction domain protein | insig. | 52 | 99 |
| | Bacteroides thetaiotaomicron VPI-5482 | BT1469 | | two-component system response regulator (NCBI ptt file) | sig. | 53 | 99 |
| | Echinicola vietnamensis KMM 6221, DSM 17526 | Echvi_2422 | | Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains | strong | 46 | 99 |
| | Pontibacter actiniarum KMM 6156, DSM 19842 | CA264_07535 | | sigma-54-dependent Fis family transcriptional regulator | insig. | 46 | 99 |
| | Pontibacter actiniarum KMM 6156, DSM 19842 | CA264_02275 | | sigma-54-dependent Fis family transcriptional regulator | insig. | 46 | 99 |
| | Bacteroides thetaiotaomicron VPI-5482 | BT0856 | | two-component system response regulator (NCBI ptt file) | sig. | 46 | 100 |
| | Bacteroides ovatus ATCC 8483 | BACOVA_02581 | | Sigma-54 interaction domain protein | insig. | 46 | 100 |
| | Parabacteroides merdae CL09T00C40 | HMPREF1078_RS12140 | | sigma-54 dependent transcriptional regulator | insig. | 46 | 100 |
| | Phocaeicola vulgatus CL09T03C04 | HMPREF1058_RS01145 | | sigma-54-dependent Fis family transcriptional regulator | strong | 46 | 100 |
| | Phocaeicola dorei CL03T12C01 | ABI39_RS16590 | | sigma-54-dependent Fis family transcriptional regulator | insig. | 46 | 100 |
| | Pontibacter actiniarum KMM 6156, DSM 19842 | CA264_14055 | | sigma-54-dependent Fis family transcriptional regulator | insig. | 44 | 99 |
| | Mucilaginibacter yixingensis YX-36 DSM 26809 | ABZR88_RS13070 | | sigma-54 dependent transcriptional regulator | insig. | 45 | 96 |
| | Pedobacter sp. GW460-11-11-14-LB5 | CA265_RS04165 | | sigma-54-dependent Fis family transcriptional regulator | insig. | 45 | 96 |
| | Phocaeicola vulgatus CL09T03C04 | HMPREF1058_RS15800 | | sigma-54-dependent Fis family transcriptional regulator | strong | 40 | 99 |
| | Rhodanobacter denitrificans MT42 | LRK55_RS11840 | | sigma-54 dependent transcriptional regulator | no data | 38 | 99 |
| | Rhodanobacter denitrificans FW104-10B01 | LRK54_RS12105 | | sigma-54 dependent transcriptional regulator | insig. | 38 | 99 |
| | Phocaeicola dorei CL03T12C01 | ABI39_RS11790 | | sigma-54-dependent Fis family transcriptional regulator | insig. | 41 | 99 |
| | Dyella japonica UNC79MFTsu3.2 | ABZR86_RS04010 | | sigma-54 dependent transcriptional regulator | insig. | 37 | 99 |
| | Bacteroides thetaiotaomicron VPI-5482 | BT1529 | | two-component system response regulator (NCBI ptt file) | sig. | 40 | 99 |
| | Bacteroides stercoris CC31F | HMPREF1181_RS04840 | | sigma-54-dependent Fis family transcriptional regulator | insig. | 40 | 98 |
| | Dickeya dadantii 3937 | DDA3937_RS20820 | | two-component system response regulator VfmH | strong | 38 | 100 |
| | Bacteroides ovatus ATCC 8483 | BACOVA_04264 | | Sigma-54 interaction domain protein | insig. | 40 | 99 |
| | Parabacteroides merdae CL09T00C40 | HMPREF1078_RS14460 | | sigma-54 dependent transcriptional regulator | insig. | 39 | 99 |
| | Rahnella sp. WP5 | EX31_RS02520 | | sigma-54-dependent Fis family transcriptional regulator | strong | 38 | 100 |
| | Dickeya dianthicola 67-19 | HGI48_RS00425 | | two-component system response regulator VfmH | cofit | 39 | 100 |
| | Dickeya dianthicola ME23 | DZA65_RS00425 | | sigma-54-dependent Fis family transcriptional regulator | cofit | 39 | 100 |
| | Escherichia coli Nissle 1917 | ECOLIN_RS23090 | | sigma-54-dependent response regulator transcription factor ZraR | insig. | 40 | 98 |
| | Escherichia fergusonii Becca | EFB2_04606 | | Transcriptional regulatory protein ZraR | insig. | 40 | 98 |
| | Escherichia coli ECOR27 | NOLOHH_05465 | zraR | sigma-54-dependent response regulator transcription factor ZraR | insig. | 40 | 98 |
| | Escherichia coli HS(pFamp)R (ATCC 700891) | OHPLBJKB_04045 | | Transcriptional regulatory protein ZraR | insig. | 40 | 98 |
| | Escherichia coli ECOR38 | HEPCGN_11960 | zraR | sigma-54-dependent response regulator transcription factor ZraR | insig. | 40 | 98 |
| | Escherichia coli BL21 | ECD_03881 | | fused DNA-binding response regulator in two-component regulatory system with ZraS: response regulator/sigma54 interaction protein | insig. | 40 | 98 |
| | Escherichia coli BW25113 | b4004 | zraR | fused DNA-binding response regulator in two-component regulatory system with ZraS: response regulator/sigma54 interaction protein (NCBI) | insig. | 40 | 98 |
| | Escherichia coli ECRC62 | BNILDI_06055 | zraR | sigma-54-dependent response regulator transcription factor ZraR | cofit | 40 | 98 |
| | Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | GFF4188 | | Response regulator of zinc sigma-54-dependent two-component system | insig. | 40 | 98 |
| | Desulfovibrio vulgaris Miyazaki F | DvMF_0823 | | two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) | insig. | 38 | 99 |
| | Klebsiella michiganensis M5al | BWI76_RS01605 | | transcriptional regulatory protein ZraR | insig. | 39 | 98 |
| | Escherichia coli ECRC101 | MCAODC_03820 | zraR | sigma-54-dependent response regulator transcription factor ZraR | insig. | 40 | 98 |
| | Escherichia coli ECRC102 | NIAGMN_11070 | zraR | sigma-54-dependent response regulator transcription factor ZraR | insig. | 40 | 98 |
| | Escherichia coli ECRC99 | KEDOAH_14840 | zraR | sigma-54-dependent response regulator transcription factor ZraR | no data | 40 | 98 |
| | Escherichia coli ECRC100 | OKFHMN_13320 | zraR | sigma-54-dependent response regulator transcription factor ZraR | cofit | 40 | 98 |
| | Escherichia coli ECRC98 | JDDGAC_16945 | zraR | sigma-54-dependent response regulator transcription factor ZraR | cofit | 39 | 98 |
| | Pseudomonas sp. S08-1 | OH686_13325 | | Two component, Sigma-54 Specific, central transcriptional regulator of acidic amino acid uptake | cofit | 37 | 100 |
| | Desulfovibrio vulgaris Miyazaki F | DvMF_2149 | | two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) | strong | 36 | 99 |
| | Desulfovibrio vulgaris Hildenborough JW710 | DVU3220 | atoC | sigma-54 dependent transcriptional regulator/response regulator (TIGR) | no data | 38 | 100 |
| | Desulfovibrio vulgaris Hildenborough JW710 | DVU1419 | atoC | sigma-54 dependent transcriptional regulator/response regulator (TIGR) | sig. | 37 | 99 |
| | Shewanella loihica PV-4 | Shew_0726 | | two component, sigma54 specific, Fis family transcriptional regulator (RefSeq) | insig. | 36 | 99 |
| | Variovorax sp. OAS795 | ABID97_RS06460 | | sigma 54-interacting transcriptional regulator | cofit | 39 | 89 |
| | Escherichia fergusonii Becca | EFB2_01635 | | Regulatory protein AtoC | insig. | 37 | 100 |
| | Escherichia coli ECOR38 | HEPCGN_22430 | atoC | acetoacetate metabolism transcriptional regulator AtoC | insig. | 37 | 100 |
| | Escherichia coli Nissle 1917 | ECOLIN_RS12965 | | acetoacetate metabolism transcriptional regulator AtoC | no data | 37 | 100 |
| | Escherichia coli BL21 | ECD_02147 | | fused response regulator of ato operon, in two-component system with AtoS: response regulator/sigma54 interaction protein | insig. | 36 | 100 |
| | Escherichia coli HS(pFamp)R (ATCC 700891) | OHPLBJKB_01490 | | Regulatory protein AtoC | insig. | 36 | 100 |
| | Escherichia coli BW25113 | b2220 | atoC | fused response regulator of ato operon, in two-component system with AtoS: response regulator/sigma54 interaction protein (NCBI) | insig. | 36 | 100 |
| | Phocaeicola dorei CL03T12C01 | ABI39_RS02120 | | sigma-54-dependent Fis family transcriptional regulator | insig. | 39 | 99 |
| | Variovorax sp. SCN45 | GFF7323 | | Transcriptional response regulatory protein GlrR | insig. | 38 | 89 |
| | Phocaeicola vulgatus CL09T03C04 | HMPREF1058_RS02780 | | sigma-54-dependent Fis family transcriptional regulator | strong | 39 | 99 |
| | Rhodanobacter denitrificans MT42 | LRK55_RS12970 | | PEP-CTERM-box response regulator transcription factor | cofit | 37 | 100 |
| | Cupriavidus basilensis FW507-4G11 | RR42_RS03980 | | Fis family transcriptional regulator | strong | 37 | 99 |
| | Desulfovibrio vulgaris Hildenborough JW710 | DVU2934 | ntrX | sigma-54 dependent transcriptional regulator/response regulator (TIGR) | no data | 38 | 90 |
| | Rhodanobacter denitrificans MT42 | LRK55_RS04170 | | sigma-54 dependent transcriptional regulator | insig. | 37 | 99 |
| | Rhodanobacter denitrificans FW104-10B01 | LRK54_RS04395 | | sigma-54 dependent transcriptional regulator | cofit | 37 | 99 |
| | Azospirillum sp. SherDot2 | MPMX19_04512 | | C4-dicarboxylate transport transcriptional regulatory protein DctD | insig. | 36 | 99 |
| | Desulfovibrio vulgaris Hildenborough JW710 | DVU0110 | ntrC | sigma-54 dependent transcriptional regulator/response regulator (TIGR) | cofit | 36 | 99 |
| | Desulfovibrio vulgaris Hildenborough JW710 | DVU3381 | ntrC | transcriptional regulatory protein zraR (TIGR) | strong | 39 | 99 |
| | Alteromonas macleodii MIT1002 | MIT1002_03048 | | Transcriptional regulatory protein ZraR | insig. | 38 | 99 |
| | Desulfovibrio vulgaris Miyazaki F | DvMF_2200 | | two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) | no data | 36 | 100 |
| | Acidovorax sp. GW101-3H11 | Ac3H11_4011 | | Putative sensory histidine kinase YfhA | sig. | 36 | 100 |
| | Rhodanobacter denitrificans FW104-10B01 | LRK54_RS13270 | | PEP-CTERM-box response regulator transcription factor | insig. | 37 | 100 |
| | Desulfovibrio vulgaris Miyazaki F | DvMF_1461 | | two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) | no data | 34 | 99 |
| | Rhodanobacter sp. FW510-T8 | OKGIIK_01730 | atoC | sigma-54-dependent Fis family transcriptional regulator | insig. | 36 | 99 |
| | Bacteroides ovatus ATCC 8483 | BACOVA_03647 | | Sigma-54 interaction domain protein | insig. | 37 | 99 |
| | Pseudomonas fluorescens FW300-N2C3 | AO356_18205 | | Fis family transcriptional regulator | insig. | 36 | 100 |
| | Rhodanobacter sp. FW510-T8 | OKGIIK_11280 | atoC | sigma-54-dependent Fis family transcriptional regulator | insig. | 36 | 99 |
| | Rhodanobacter denitrificans FW104-10B01 | LRK54_RS05020 | | sigma-54 dependent transcriptional regulator | strong | 35 | 99 |
| | Rhodanobacter denitrificans MT42 | LRK55_RS04800 | | sigma-54 dependent transcriptional regulator | cofit | 35 | 99 |
| | Desulfovibrio vulgaris Miyazaki F | DvMF_1993 | | two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) | sig. | 36 | 99 |
| | Phocaeicola vulgatus CL09T03C04 | HMPREF1058_RS04160 | | sigma-54-dependent Fis family transcriptional regulator | insig. | 36 | 99 |
| | Bacteroides thetaiotaomicron VPI-5482 | BT3801 | | rteB, two-component system response regulator (NCBI ptt file) | strong | 36 | 99 |
| | Pseudomonas fluorescens FW300-N2E3 | AO353_16265 | | Fis family transcriptional regulator | strong | 36 | 100 |
| | Dyella japonica UNC79MFTsu3.2 | ABZR86_RS10560 | | sigma-54 dependent transcriptional regulator | insig. | 35 | 99 |
| | Pseudomonas fluorescens SBW25 | PFLU_RS05610 | | sigma-54-dependent Fis family transcriptional regulator | strong | 37 | 99 |
| | Pseudomonas fluorescens SBW25-INTG | PFLU_RS05610 | | sigma-54-dependent Fis family transcriptional regulator | strong | 37 | 99 |
| | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_5565 | | Two component, Sigma-54 Specific, central transcriptional regulator of acidic amino acid uptake | insig. | 36 | 100 |
| | Shewanella amazonensis SB2B | Sama_2213 | | response regulator receiver protein (RefSeq) | strong | 37 | 99 |
| | Parabacteroides merdae CL09T00C40 | HMPREF1078_RS03700 | | sigma-54 dependent transcriptional regulator | insig. | 37 | 98 |
| | Cupriavidus basilensis FW507-4G11 | RR42_RS01705 | | Fis family transcriptional regulator | insig. | 36 | 99 |
| | Hydrogenophaga sp. GW460-11-11-14-LB1 | GFF610 | | Putative sensory histidine kinase YfhA | insig. | 35 | 99 |
| | Parabacteroides merdae CL09T00C40 | HMPREF1078_RS14380 | | sigma-54 dependent transcriptional regulator | insig. | 35 | 99 |
| | Pseudomonas simiae WCS417 | PS417_05525 | | Fis family transcriptional regulator | strong | 37 | 99 |
| | Burkholderia phytofirmans PsJN | BPHYT_RS30045 | | ATPase AAA | insig. | 36 | 99 |